Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2169

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpcrA and Synpcc7942_2169 are separated by 94 nucleotidesSynpcc7942_2169 and fur2 are separated by 64 nucleotidesfur2 and dpsA are separated by 198 nucleotides Synpcc7942_2168: pcrA - ATP-dependent DNA helicase, Rep family, at 2,248,681 to 2,251,065 pcrA Synpcc7942_2169: Synpcc7942_2169 - hypothetical protein, at 2,251,160 to 2,251,483 _2169 Synpcc7942_2170: fur2 - putative ferric uptake regulator, FUR family, at 2,251,548 to 2,251,997 fur2 Synpcc7942_2171: dpsA - starvation induced DNA binding protein, at 2,252,196 to 2,252,726 dpsA Position (kb) 2251 2252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2250.770 kb on + strand, within pcrAat 2250.821 kb on + strand, within pcrAat 2250.829 kb on - strandat 2250.829 kb on - strandat 2250.829 kb on - strandat 2250.855 kb on + strandat 2251.025 kb on + strandat 2251.026 kb on + strandat 2251.062 kb on - strandat 2251.064 kb on - strandat 2251.066 kb on + strandat 2251.067 kb on - strandat 2251.106 kb on - strandat 2251.113 kb on + strandat 2251.113 kb on + strandat 2251.113 kb on + strandat 2251.121 kb on - strandat 2251.121 kb on - strandat 2251.121 kb on - strandat 2251.121 kb on - strandat 2251.121 kb on - strandat 2251.127 kb on - strandat 2251.154 kb on - strandat 2251.154 kb on - strandat 2251.162 kb on + strandat 2251.166 kb on - strandat 2251.169 kb on + strandat 2251.177 kb on - strandat 2251.177 kb on - strandat 2251.191 kb on + strandat 2251.191 kb on + strandat 2251.191 kb on + strandat 2251.199 kb on - strand, within Synpcc7942_2169at 2251.204 kb on - strand, within Synpcc7942_2169at 2251.206 kb on + strand, within Synpcc7942_2169at 2251.235 kb on + strand, within Synpcc7942_2169at 2251.235 kb on + strand, within Synpcc7942_2169at 2251.235 kb on + strand, within Synpcc7942_2169at 2251.236 kb on - strand, within Synpcc7942_2169at 2251.240 kb on + strand, within Synpcc7942_2169at 2251.240 kb on + strand, within Synpcc7942_2169at 2251.240 kb on + strand, within Synpcc7942_2169at 2251.240 kb on + strand, within Synpcc7942_2169at 2251.245 kb on + strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.248 kb on - strand, within Synpcc7942_2169at 2251.255 kb on - strand, within Synpcc7942_2169at 2251.255 kb on - strand, within Synpcc7942_2169at 2251.264 kb on + strand, within Synpcc7942_2169at 2251.269 kb on + strand, within Synpcc7942_2169at 2251.269 kb on + strand, within Synpcc7942_2169at 2251.272 kb on - strand, within Synpcc7942_2169at 2251.272 kb on - strand, within Synpcc7942_2169at 2251.312 kb on - strand, within Synpcc7942_2169at 2251.314 kb on + strand, within Synpcc7942_2169at 2251.315 kb on - strand, within Synpcc7942_2169at 2251.322 kb on - strand, within Synpcc7942_2169at 2251.325 kb on + strand, within Synpcc7942_2169at 2251.325 kb on + strand, within Synpcc7942_2169at 2251.325 kb on + strand, within Synpcc7942_2169at 2251.327 kb on - strand, within Synpcc7942_2169at 2251.333 kb on - strand, within Synpcc7942_2169at 2251.333 kb on - strand, within Synpcc7942_2169at 2251.333 kb on - strand, within Synpcc7942_2169at 2251.333 kb on - strand, within Synpcc7942_2169at 2251.346 kb on + strand, within Synpcc7942_2169at 2251.385 kb on + strand, within Synpcc7942_2169at 2251.385 kb on + strand, within Synpcc7942_2169at 2251.393 kb on - strand, within Synpcc7942_2169at 2251.393 kb on - strand, within Synpcc7942_2169at 2251.403 kb on + strand, within Synpcc7942_2169at 2251.412 kb on - strand, within Synpcc7942_2169at 2251.490 kb on - strandat 2251.554 kb on - strandat 2251.580 kb on - strandat 2251.580 kb on - strandat 2251.589 kb on + strandat 2251.596 kb on + strand, within fur2at 2251.596 kb on + strand, within fur2at 2251.596 kb on + strand, within fur2at 2251.596 kb on + strand, within fur2at 2251.601 kb on + strand, within fur2at 2251.602 kb on - strand, within fur2at 2251.604 kb on - strand, within fur2at 2251.604 kb on - strand, within fur2at 2251.604 kb on - strand, within fur2at 2251.619 kb on - strand, within fur2at 2251.634 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.664 kb on + strand, within fur2at 2251.668 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.672 kb on - strand, within fur2at 2251.687 kb on + strand, within fur2at 2251.724 kb on - strand, within fur2at 2251.730 kb on + strand, within fur2at 2251.743 kb on + strand, within fur2at 2251.751 kb on - strand, within fur2at 2251.751 kb on - strand, within fur2at 2251.755 kb on + strand, within fur2at 2251.757 kb on + strand, within fur2at 2251.761 kb on - strand, within fur2at 2251.763 kb on - strand, within fur2at 2251.766 kb on + strand, within fur2at 2251.771 kb on - strand, within fur2at 2251.774 kb on - strand, within fur2at 2251.774 kb on - strand, within fur2at 2251.774 kb on - strand, within fur2at 2251.789 kb on + strand, within fur2at 2251.789 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.794 kb on + strand, within fur2at 2251.795 kb on + strand, within fur2at 2251.795 kb on + strand, within fur2at 2251.795 kb on + strand, within fur2at 2251.797 kb on - strand, within fur2at 2251.797 kb on - strand, within fur2at 2251.797 kb on - strand, within fur2at 2251.801 kb on + strand, within fur2at 2251.801 kb on + strand, within fur2at 2251.802 kb on - strand, within fur2at 2251.802 kb on - strand, within fur2at 2251.802 kb on - strand, within fur2at 2251.802 kb on - strand, within fur2at 2251.802 kb on - strand, within fur2at 2251.809 kb on - strand, within fur2at 2251.837 kb on + strand, within fur2at 2251.837 kb on + strand, within fur2at 2251.844 kb on + strand, within fur2at 2251.845 kb on - strand, within fur2at 2251.847 kb on - strand, within fur2at 2251.848 kb on + strand, within fur2at 2251.848 kb on + strand, within fur2at 2251.848 kb on + strand, within fur2at 2251.852 kb on - strand, within fur2at 2251.855 kb on + strand, within fur2at 2251.856 kb on - strand, within fur2at 2251.856 kb on - strand, within fur2at 2251.856 kb on - strand, within fur2at 2251.906 kb on + strand, within fur2at 2251.937 kb on - strand, within fur2at 2251.952 kb on - strand, within fur2at 2251.959 kb on - strandat 2251.990 kb on + strandat 2252.021 kb on - strandat 2252.106 kb on + strandat 2252.111 kb on + strandat 2252.203 kb on + strandat 2252.222 kb on - strandat 2252.340 kb on + strand, within dpsAat 2252.359 kb on + strand, within dpsAat 2252.391 kb on + strand, within dpsAat 2252.399 kb on - strand, within dpsAat 2252.424 kb on + strand, within dpsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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2,250,770 + pcrA Synpcc7942_2168 0.88 +1.6
2,250,821 + pcrA Synpcc7942_2168 0.90 +1.1
2,250,829 - -1.3
2,250,829 - -0.7
2,250,829 - -0.1
2,250,855 + -1.9
2,251,025 + -2.8
2,251,026 + -4.0
2,251,062 - -2.8
2,251,064 - -1.3
2,251,066 + +0.1
2,251,067 - -0.7
2,251,106 - -1.6
2,251,113 + -2.6
2,251,113 + +1.4
2,251,113 + +0.1
2,251,121 - +0.7
2,251,121 - -0.5
2,251,121 - -0.3
2,251,121 - -0.7
2,251,121 - +0.5
2,251,127 - -0.2
2,251,154 - +0.4
2,251,154 - +0.7
2,251,162 + +0.3
2,251,166 - -0.9
2,251,169 + -0.1
2,251,177 - +0.4
2,251,177 - -0.9
2,251,191 + +0.4
2,251,191 + -1.2
2,251,191 + -2.5
2,251,199 - Synpcc7942_2169 0.12 +0.0
2,251,204 - Synpcc7942_2169 0.14 -0.5
2,251,206 + Synpcc7942_2169 0.14 -1.9
2,251,235 + Synpcc7942_2169 0.23 -0.4
2,251,235 + Synpcc7942_2169 0.23 -0.2
2,251,235 + Synpcc7942_2169 0.23 -4.0
2,251,236 - Synpcc7942_2169 0.23 -3.7
2,251,240 + Synpcc7942_2169 0.25 -1.3
2,251,240 + Synpcc7942_2169 0.25 -1.3
2,251,240 + Synpcc7942_2169 0.25 -2.3
2,251,240 + Synpcc7942_2169 0.25 -2.8
2,251,245 + Synpcc7942_2169 0.26 -0.6
2,251,248 - Synpcc7942_2169 0.27 +0.3
2,251,248 - Synpcc7942_2169 0.27 -1.3
2,251,248 - Synpcc7942_2169 0.27 -0.3
2,251,248 - Synpcc7942_2169 0.27 +0.9
2,251,248 - Synpcc7942_2169 0.27 -0.4
2,251,248 - Synpcc7942_2169 0.27 -0.0
2,251,248 - Synpcc7942_2169 0.27 +0.9
2,251,255 - Synpcc7942_2169 0.29 -2.6
2,251,255 - Synpcc7942_2169 0.29 -3.2
2,251,264 + Synpcc7942_2169 0.32 -1.1
2,251,269 + Synpcc7942_2169 0.34 -0.6
2,251,269 + Synpcc7942_2169 0.34 +0.6
2,251,272 - Synpcc7942_2169 0.35 +0.7
2,251,272 - Synpcc7942_2169 0.35 -0.4
2,251,312 - Synpcc7942_2169 0.47 +0.3
2,251,314 + Synpcc7942_2169 0.48 -0.1
2,251,315 - Synpcc7942_2169 0.48 -4.2
2,251,322 - Synpcc7942_2169 0.50 -1.7
2,251,325 + Synpcc7942_2169 0.51 -2.8
2,251,325 + Synpcc7942_2169 0.51 +1.8
2,251,325 + Synpcc7942_2169 0.51 +0.1
2,251,327 - Synpcc7942_2169 0.52 -0.2
2,251,333 - Synpcc7942_2169 0.53 -0.7
2,251,333 - Synpcc7942_2169 0.53 -0.3
2,251,333 - Synpcc7942_2169 0.53 -0.1
2,251,333 - Synpcc7942_2169 0.53 -2.8
2,251,346 + Synpcc7942_2169 0.57 -0.3
2,251,385 + Synpcc7942_2169 0.69 -1.8
2,251,385 + Synpcc7942_2169 0.69 -3.1
2,251,393 - Synpcc7942_2169 0.72 -0.2
2,251,393 - Synpcc7942_2169 0.72 -0.4
2,251,403 + Synpcc7942_2169 0.75 -0.2
2,251,412 - Synpcc7942_2169 0.78 +1.1
2,251,490 - -2.3
2,251,554 - -2.1
2,251,580 - -0.2
2,251,580 - -2.0
2,251,589 + -0.6
2,251,596 + fur2 Synpcc7942_2170 0.11 +0.1
2,251,596 + fur2 Synpcc7942_2170 0.11 +0.6
2,251,596 + fur2 Synpcc7942_2170 0.11 -0.1
2,251,596 + fur2 Synpcc7942_2170 0.11 -0.1
2,251,601 + fur2 Synpcc7942_2170 0.12 -0.3
2,251,602 - fur2 Synpcc7942_2170 0.12 -1.6
2,251,604 - fur2 Synpcc7942_2170 0.12 -0.5
2,251,604 - fur2 Synpcc7942_2170 0.12 +0.3
2,251,604 - fur2 Synpcc7942_2170 0.12 -1.8
2,251,619 - fur2 Synpcc7942_2170 0.16 -0.4
2,251,634 + fur2 Synpcc7942_2170 0.19 -0.3
2,251,664 + fur2 Synpcc7942_2170 0.26 -3.6
2,251,664 + fur2 Synpcc7942_2170 0.26 -1.8
2,251,664 + fur2 Synpcc7942_2170 0.26 +0.2
2,251,664 + fur2 Synpcc7942_2170 0.26 -4.3
2,251,664 + fur2 Synpcc7942_2170 0.26 +0.7
2,251,664 + fur2 Synpcc7942_2170 0.26 -3.3
2,251,664 + fur2 Synpcc7942_2170 0.26 +0.7
2,251,664 + fur2 Synpcc7942_2170 0.26 -0.3
2,251,664 + fur2 Synpcc7942_2170 0.26 +0.3
2,251,664 + fur2 Synpcc7942_2170 0.26 -0.9
2,251,664 + fur2 Synpcc7942_2170 0.26 -2.4
2,251,668 - fur2 Synpcc7942_2170 0.27 -0.5
2,251,672 - fur2 Synpcc7942_2170 0.28 +1.3
2,251,672 - fur2 Synpcc7942_2170 0.28 -0.5
2,251,672 - fur2 Synpcc7942_2170 0.28 -1.1
2,251,672 - fur2 Synpcc7942_2170 0.28 -0.1
2,251,672 - fur2 Synpcc7942_2170 0.28 +0.3
2,251,672 - fur2 Synpcc7942_2170 0.28 -0.6
2,251,672 - fur2 Synpcc7942_2170 0.28 -1.3
2,251,672 - fur2 Synpcc7942_2170 0.28 -0.4
2,251,672 - fur2 Synpcc7942_2170 0.28 -4.6
2,251,687 + fur2 Synpcc7942_2170 0.31 +0.2
2,251,724 - fur2 Synpcc7942_2170 0.39 -3.8
2,251,730 + fur2 Synpcc7942_2170 0.40 -3.7
2,251,743 + fur2 Synpcc7942_2170 0.43 -3.4
2,251,751 - fur2 Synpcc7942_2170 0.45 +0.1
2,251,751 - fur2 Synpcc7942_2170 0.45 +1.3
2,251,755 + fur2 Synpcc7942_2170 0.46 -3.2
2,251,757 + fur2 Synpcc7942_2170 0.46 +0.1
2,251,761 - fur2 Synpcc7942_2170 0.47 +0.6
2,251,763 - fur2 Synpcc7942_2170 0.48 -2.5
2,251,766 + fur2 Synpcc7942_2170 0.48 -0.0
2,251,771 - fur2 Synpcc7942_2170 0.50 +0.1
2,251,774 - fur2 Synpcc7942_2170 0.50 -0.4
2,251,774 - fur2 Synpcc7942_2170 0.50 -4.0
2,251,774 - fur2 Synpcc7942_2170 0.50 -0.7
2,251,789 + fur2 Synpcc7942_2170 0.54 -1.7
2,251,789 + fur2 Synpcc7942_2170 0.54 +0.7
2,251,794 + fur2 Synpcc7942_2170 0.55 -3.4
2,251,794 + fur2 Synpcc7942_2170 0.55 +0.6
2,251,794 + fur2 Synpcc7942_2170 0.55 -0.5
2,251,794 + fur2 Synpcc7942_2170 0.55 -2.2
2,251,794 + fur2 Synpcc7942_2170 0.55 -1.2
2,251,794 + fur2 Synpcc7942_2170 0.55 -0.3
2,251,794 + fur2 Synpcc7942_2170 0.55 +1.4
2,251,794 + fur2 Synpcc7942_2170 0.55 -1.2
2,251,794 + fur2 Synpcc7942_2170 0.55 -2.5
2,251,794 + fur2 Synpcc7942_2170 0.55 -2.5
2,251,794 + fur2 Synpcc7942_2170 0.55 -1.5
2,251,795 + fur2 Synpcc7942_2170 0.55 +0.2
2,251,795 + fur2 Synpcc7942_2170 0.55 +1.6
2,251,795 + fur2 Synpcc7942_2170 0.55 +0.7
2,251,797 - fur2 Synpcc7942_2170 0.55 +1.7
2,251,797 - fur2 Synpcc7942_2170 0.55 -2.5
2,251,797 - fur2 Synpcc7942_2170 0.55 +1.3
2,251,801 + fur2 Synpcc7942_2170 0.56 -2.4
2,251,801 + fur2 Synpcc7942_2170 0.56 +0.6
2,251,802 - fur2 Synpcc7942_2170 0.56 +0.9
2,251,802 - fur2 Synpcc7942_2170 0.56 -0.1
2,251,802 - fur2 Synpcc7942_2170 0.56 +1.3
2,251,802 - fur2 Synpcc7942_2170 0.56 -0.1
2,251,802 - fur2 Synpcc7942_2170 0.56 +0.1
2,251,809 - fur2 Synpcc7942_2170 0.58 -2.8
2,251,837 + fur2 Synpcc7942_2170 0.64 -3.2
2,251,837 + fur2 Synpcc7942_2170 0.64 +0.9
2,251,844 + fur2 Synpcc7942_2170 0.66 +0.6
2,251,845 - fur2 Synpcc7942_2170 0.66 -0.1
2,251,847 - fur2 Synpcc7942_2170 0.66 -1.9
2,251,848 + fur2 Synpcc7942_2170 0.67 +0.2
2,251,848 + fur2 Synpcc7942_2170 0.67 -0.1
2,251,848 + fur2 Synpcc7942_2170 0.67 +0.6
2,251,852 - fur2 Synpcc7942_2170 0.68 +0.4
2,251,855 + fur2 Synpcc7942_2170 0.68 +0.4
2,251,856 - fur2 Synpcc7942_2170 0.68 -1.2
2,251,856 - fur2 Synpcc7942_2170 0.68 -0.4
2,251,856 - fur2 Synpcc7942_2170 0.68 +2.2
2,251,906 + fur2 Synpcc7942_2170 0.80 +0.3
2,251,937 - fur2 Synpcc7942_2170 0.86 +1.1
2,251,952 - fur2 Synpcc7942_2170 0.90 -1.5
2,251,959 - -1.3
2,251,990 + +2.0
2,252,021 - -0.7
2,252,106 + +2.3
2,252,111 + +0.8
2,252,203 + +0.8
2,252,222 - -1.9
2,252,340 + dpsA Synpcc7942_2171 0.27 +0.5
2,252,359 + dpsA Synpcc7942_2171 0.31 -0.1
2,252,391 + dpsA Synpcc7942_2171 0.37 -0.2
2,252,399 - dpsA Synpcc7942_2171 0.38 -0.3
2,252,424 + dpsA Synpcc7942_2171 0.43 -2.1

Or see this region's nucleotide sequence