Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2105

Experiment: Flask grown at 18C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown at 18C
2,184,225	-		Synpcc7942_2103	0.26	-2.4
2,184,305	-		Synpcc7942_2103	0.46	-3.2
2,184,324	+		Synpcc7942_2103	0.51	-0.5
2,184,335	+		Synpcc7942_2103	0.53	+0.5
2,184,345	+		Synpcc7942_2103	0.56	+0.3
2,184,353	+		Synpcc7942_2103	0.58	-2.9
2,184,408	-		Synpcc7942_2103	0.71	-2.8
2,184,426	+		Synpcc7942_2103	0.76	+1.1
2,184,434	-		Synpcc7942_2103	0.78	-1.1
2,184,468	-		Synpcc7942_2103	0.86	+1.5
2,184,518	+				-2.4
2,184,528	-				-2.1
2,184,562	+				+0.9
2,184,576	-				+0.2
2,184,604	+				+0.1
2,184,606	+				+0.0
2,184,606	+				+1.2
2,184,607	-				-1.1
2,184,612	-				-0.9
2,184,624	-				+0.9
2,184,624	-				+0.9
2,184,631	+				+1.3
2,184,634	-				+1.1
2,184,639	-				+1.7
2,184,696	+				-2.9
2,184,764	-				+1.5
2,184,764	-				+1.6
2,184,795	+	cynS	Synpcc7942_2104	0.12	+1.9
2,184,893	+	cynS	Synpcc7942_2104	0.35	+0.4
2,184,894	+	cynS	Synpcc7942_2104	0.35	+0.7
2,184,894	+	cynS	Synpcc7942_2104	0.35	+1.1
2,184,902	-	cynS	Synpcc7942_2104	0.37	-1.7
2,184,962	+	cynS	Synpcc7942_2104	0.50	+0.9
2,184,971	-	cynS	Synpcc7942_2104	0.52	+1.4
2,184,986	+	cynS	Synpcc7942_2104	0.56	+1.0
2,185,001	-	cynS	Synpcc7942_2104	0.59	+2.0
2,185,010	+	cynS	Synpcc7942_2104	0.61	-1.2
2,185,188	+				+0.9
2,185,190	+				-2.0
2,185,298	-	cynD	Synpcc7942_2105	0.12	-0.6
2,185,312	+	cynD	Synpcc7942_2105	0.14	+2.4
2,185,361	+	cynD	Synpcc7942_2105	0.20	-1.0
2,185,385	+	cynD	Synpcc7942_2105	0.22	+0.9
2,185,388	-	cynD	Synpcc7942_2105	0.23	-0.5
2,185,399	-	cynD	Synpcc7942_2105	0.24	+1.4
2,185,420	-	cynD	Synpcc7942_2105	0.26	+0.3
2,185,468	+	cynD	Synpcc7942_2105	0.32	-2.9
2,185,473	+	cynD	Synpcc7942_2105	0.32	-2.2
2,185,491	+	cynD	Synpcc7942_2105	0.34	-1.5
2,185,525	-	cynD	Synpcc7942_2105	0.38	-2.6
2,185,535	+	cynD	Synpcc7942_2105	0.40	+1.2
2,185,535	+	cynD	Synpcc7942_2105	0.40	+0.6
2,185,535	+	cynD	Synpcc7942_2105	0.40	+1.5
2,185,543	-	cynD	Synpcc7942_2105	0.40	-2.1
2,185,543	-	cynD	Synpcc7942_2105	0.40	+2.3
2,185,559	+	cynD	Synpcc7942_2105	0.42	+0.6
2,185,567	-				+0.5
2,185,569	-	cynD	Synpcc7942_2105	0.43	-0.8
2,185,608	-	cynD	Synpcc7942_2105	0.48	+2.0
2,185,614	-	cynD	Synpcc7942_2105	0.49	+0.0
2,185,619	+	cynD	Synpcc7942_2105	0.49	+0.1
2,185,620	+	cynD	Synpcc7942_2105	0.49	-0.5
2,185,627	-	cynD	Synpcc7942_2105	0.50	-1.4
2,185,664	+	cynD	Synpcc7942_2105	0.54	+1.4
2,185,664	+	cynD	Synpcc7942_2105	0.54	+1.1
2,185,672	-	cynD	Synpcc7942_2105	0.55	+1.5
2,185,672	-	cynD	Synpcc7942_2105	0.55	+0.2
2,185,672	-	cynD	Synpcc7942_2105	0.55	+1.0
2,185,672	-	cynD	Synpcc7942_2105	0.55	-2.3
2,185,735	-	cynD	Synpcc7942_2105	0.63	-2.8
2,185,761	-	cynD	Synpcc7942_2105	0.66	+1.6
2,185,776	+	cynD	Synpcc7942_2105	0.67	-1.9
2,185,842	+	cynD	Synpcc7942_2105	0.75	-0.5
2,186,024	-				+1.7
2,186,116	-				-1.5
2,186,220	+	cynB	Synpcc7942_2106	0.20	-2.1
2,186,231	+	cynB	Synpcc7942_2106	0.21	+1.2
2,186,236	+	cynB	Synpcc7942_2106	0.22	+2.7
2,186,247	-	cynB	Synpcc7942_2106	0.23	+1.9
2,186,249	+	cynB	Synpcc7942_2106	0.23	-1.3
2,186,257	-	cynB	Synpcc7942_2106	0.24	+1.8
2,186,292	+	cynB	Synpcc7942_2106	0.29	+1.4
2,186,292	+	cynB	Synpcc7942_2106	0.29	-1.3
2,186,300	-	cynB	Synpcc7942_2106	0.30	+0.5
2,186,374	+	cynB	Synpcc7942_2106	0.39	-1.3
2,186,390	+	cynB	Synpcc7942_2106	0.41	-0.9
2,186,399	-	cynB	Synpcc7942_2106	0.42	+0.3
2,186,404	-	cynB	Synpcc7942_2106	0.43	+1.6
2,186,406	+	cynB	Synpcc7942_2106	0.43	-1.6
2,186,409	-	cynB	Synpcc7942_2106	0.44	-0.4
2,186,511	-	cynB	Synpcc7942_2106	0.56	+0.1
2,186,512	+	cynB	Synpcc7942_2106	0.57	+1.3
2,186,614	-	cynB	Synpcc7942_2106	0.69	+0.9
2,186,640	-	cynB	Synpcc7942_2106	0.73	-2.2
2,186,843	-				-1.1
2,186,845	-				-1.6
2,186,926	-				+0.6
2,186,985	-				-0.1
2,187,057	-	cynA	Synpcc7942_2107	0.12	-0.1
2,187,057	-	cynA	Synpcc7942_2107	0.12	-2.1