Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1890 and labA are separated by 157 nucleotides labA and Synpcc7942_1892 overlap by 4 nucleotides Synpcc7942_1892 and natA overlap by 25 nucleotides natA and natC overlap by 11 nucleotides
Synpcc7942_1890: Synpcc7942_1890 - hypothetical protein, at 1,963,748 to 1,964,254
_1890
Synpcc7942_1891: labA - hypothetical protein, at 1,964,412 to 1,964,972
labA
Synpcc7942_1892: Synpcc7942_1892 - Rhodanese-like, at 1,964,969 to 1,965,778
_1892
Synpcc7942_1893: natA - ATPase, at 1,965,754 to 1,966,530
natA
Synpcc7942_1894: natC - integral membrane protein of the ABC-type Nat permease for neutral amino acids, at 1,966,520 to 1,967,599
natC
Position (kb) 1964
1965
1966 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 1963.979 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1963.984 kb on - strand, within Synpcc7942_1890 at 1964.008 kb on - strand, within Synpcc7942_1890 at 1964.013 kb on - strand, within Synpcc7942_1890 at 1964.031 kb on + strand, within Synpcc7942_1890 at 1964.043 kb on - strand, within Synpcc7942_1890 at 1964.046 kb on + strand, within Synpcc7942_1890 at 1964.067 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.071 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.076 kb on + strand, within Synpcc7942_1890 at 1964.092 kb on + strand, within Synpcc7942_1890 at 1964.100 kb on - strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.110 kb on + strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.118 kb on - strand, within Synpcc7942_1890 at 1964.120 kb on - strand, within Synpcc7942_1890 at 1964.184 kb on + strand, within Synpcc7942_1890 at 1964.204 kb on - strand at 1964.209 kb on - strand at 1964.210 kb on - strand at 1964.210 kb on - strand at 1964.213 kb on + strand at 1964.215 kb on - strand at 1964.237 kb on - strand at 1964.243 kb on - strand at 1964.301 kb on + strand at 1964.301 kb on + strand at 1964.331 kb on + strand at 1964.366 kb on + strand at 1964.383 kb on - strand at 1964.513 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.546 kb on + strand, within labA at 1964.554 kb on - strand, within labA at 1964.554 kb on - strand, within labA at 1964.620 kb on - strand, within labA at 1964.629 kb on - strand, within labA at 1964.674 kb on - strand, within labA at 1964.762 kb on + strand, within labA at 1964.929 kb on + strand at 1964.937 kb on - strand at 1964.937 kb on - strand at 1964.966 kb on + strand at 1964.974 kb on - strand at 1964.981 kb on - strand at 1964.989 kb on - strand at 1965.008 kb on + strand at 1965.027 kb on + strand at 1965.032 kb on - strand at 1965.056 kb on + strand, within Synpcc7942_1892 at 1965.064 kb on - strand at 1965.087 kb on + strand, within Synpcc7942_1892 at 1965.095 kb on - strand, within Synpcc7942_1892 at 1965.097 kb on - strand, within Synpcc7942_1892 at 1965.121 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.128 kb on - strand, within Synpcc7942_1892 at 1965.229 kb on + strand, within Synpcc7942_1892 at 1965.231 kb on - strand, within Synpcc7942_1892 at 1965.269 kb on + strand, within Synpcc7942_1892 at 1965.282 kb on - strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.306 kb on + strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.316 kb on - strand, within Synpcc7942_1892 at 1965.336 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.337 kb on + strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.344 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.345 kb on - strand, within Synpcc7942_1892 at 1965.352 kb on + strand, within Synpcc7942_1892 at 1965.355 kb on - strand, within Synpcc7942_1892 at 1965.446 kb on + strand, within Synpcc7942_1892 at 1965.452 kb on + strand, within Synpcc7942_1892 at 1965.460 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.498 kb on - strand, within Synpcc7942_1892 at 1965.513 kb on + strand, within Synpcc7942_1892 at 1965.521 kb on + strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.542 kb on - strand, within Synpcc7942_1892 at 1965.600 kb on - strand, within Synpcc7942_1892 at 1965.634 kb on - strand, within Synpcc7942_1892 at 1965.691 kb on + strand, within Synpcc7942_1892 at 1965.750 kb on - strand at 1965.757 kb on + strand at 1965.790 kb on - strand at 1965.813 kb on - strand at 1965.876 kb on - strand, within natA at 1965.882 kb on + strand, within natA at 1965.894 kb on - strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.909 kb on + strand, within natA at 1965.926 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.963 kb on + strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.971 kb on - strand, within natA at 1965.999 kb on - strand, within natA at 1966.036 kb on + strand, within natA at 1966.042 kb on - strand, within natA at 1966.043 kb on + strand, within natA at 1966.058 kb on + strand, within natA at 1966.067 kb on - strand, within natA at 1966.073 kb on + strand, within natA at 1966.073 kb on + strand, within natA at 1966.081 kb on - strand, within natA at 1966.086 kb on - strand, within natA at 1966.114 kb on - strand, within natA at 1966.137 kb on + strand, within natA at 1966.137 kb on + strand, within natA at 1966.145 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.146 kb on - strand, within natA at 1966.203 kb on + strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.211 kb on - strand, within natA at 1966.228 kb on + strand, within natA at 1966.236 kb on - strand, within natA at 1966.236 kb on - strand, within natA at 1966.236 kb on - strand, within natA at 1966.271 kb on + strand, within natA at 1966.276 kb on + strand, within natA at 1966.288 kb on - strand, within natA at 1966.304 kb on + strand, within natA at 1966.342 kb on - strand, within natA at 1966.364 kb on - strand, within natA at 1966.372 kb on - strand, within natA at 1966.375 kb on - strand, within natA at 1966.411 kb on - strand, within natA at 1966.439 kb on + strand, within natA at 1966.456 kb on + strand at 1966.494 kb on + strand at 1966.494 kb on + strand at 1966.511 kb on + strand at 1966.519 kb on - strand at 1966.540 kb on - strand at 1966.584 kb on + strand at 1966.592 kb on + strand at 1966.595 kb on - strand at 1966.609 kb on - strand at 1966.626 kb on + strand at 1966.645 kb on - strand, within natC at 1966.675 kb on + strand, within natC at 1966.679 kb on + strand, within natC at 1966.687 kb on + strand, within natC at 1966.687 kb on - strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.703 kb on + strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.711 kb on - strand, within natC at 1966.713 kb on + strand, within natC at 1966.722 kb on - strand, within natC at 1966.722 kb on - strand, within natC at 1966.729 kb on - strand, within natC at 1966.731 kb on + strand, within natC at 1966.736 kb on + strand, within natC at 1966.741 kb on + strand, within natC at 1966.759 kb on + strand, within natC at 1966.766 kb on + strand, within natC at 1966.767 kb on - strand, within natC at 1966.767 kb on - strand, within natC
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,963,979 - Synpcc7942_1890 0.46 +0.0 1,963,984 - Synpcc7942_1890 0.47 -2.5 1,963,984 - Synpcc7942_1890 0.47 -0.7 1,964,008 - Synpcc7942_1890 0.51 +1.5 1,964,013 - Synpcc7942_1890 0.52 -0.1 1,964,031 + Synpcc7942_1890 0.56 +2.5 1,964,043 - Synpcc7942_1890 0.58 -0.1 1,964,046 + Synpcc7942_1890 0.59 +3.3 1,964,067 + Synpcc7942_1890 0.63 +1.6 1,964,071 + Synpcc7942_1890 0.64 +1.4 1,964,071 + Synpcc7942_1890 0.64 +1.6 1,964,076 + +0.2 1,964,076 + Synpcc7942_1890 0.65 +2.5 1,964,076 + Synpcc7942_1890 0.65 -1.1 1,964,092 + Synpcc7942_1890 0.68 +2.3 1,964,100 - Synpcc7942_1890 0.69 +2.5 1,964,110 + Synpcc7942_1890 0.71 +2.4 1,964,110 + Synpcc7942_1890 0.71 +4.4 1,964,118 - Synpcc7942_1890 0.73 +3.5 1,964,118 - Synpcc7942_1890 0.73 +3.3 1,964,120 - Synpcc7942_1890 0.73 +2.9 1,964,184 + Synpcc7942_1890 0.86 +0.4 1,964,204 - -0.5 1,964,209 - +3.7 1,964,210 - +2.9 1,964,210 - +2.0 1,964,213 + -0.1 1,964,215 - +0.3 1,964,237 - +3.8 1,964,243 - +3.6 1,964,301 + -0.7 1,964,301 + +1.5 1,964,331 + +3.2 1,964,366 + +4.9 1,964,383 - +0.1 1,964,513 + labA Synpcc7942_1891 0.18 -6.2 1,964,546 + labA Synpcc7942_1891 0.24 -2.1 1,964,546 + labA Synpcc7942_1891 0.24 -4.8 1,964,554 - labA Synpcc7942_1891 0.25 -1.5 1,964,554 - labA Synpcc7942_1891 0.25 -4.0 1,964,620 - labA Synpcc7942_1891 0.37 -1.3 1,964,629 - labA Synpcc7942_1891 0.39 -2.1 1,964,674 - labA Synpcc7942_1891 0.47 -3.6 1,964,762 + labA Synpcc7942_1891 0.62 -3.0 1,964,929 + +4.0 1,964,937 - -1.0 1,964,937 - -1.7 1,964,966 + +0.4 1,964,974 - -1.2 1,964,981 - +3.6 1,964,989 - +1.1 1,965,008 + +2.6 1,965,027 + +1.5 1,965,032 - +2.2 1,965,056 + Synpcc7942_1892 0.11 +1.5 1,965,064 - -0.4 1,965,087 + Synpcc7942_1892 0.15 +1.9 1,965,095 - Synpcc7942_1892 0.16 +1.5 1,965,097 - Synpcc7942_1892 0.16 +1.9 1,965,121 - Synpcc7942_1892 0.19 +1.7 1,965,128 - Synpcc7942_1892 0.20 +1.4 1,965,128 - Synpcc7942_1892 0.20 +1.3 1,965,128 - Synpcc7942_1892 0.20 +0.3 1,965,229 + Synpcc7942_1892 0.32 +1.5 1,965,231 - Synpcc7942_1892 0.32 -0.3 1,965,269 + Synpcc7942_1892 0.37 +1.8 1,965,282 - Synpcc7942_1892 0.39 -2.0 1,965,306 + Synpcc7942_1892 0.42 -0.1 1,965,306 + Synpcc7942_1892 0.42 +0.2 1,965,316 - Synpcc7942_1892 0.43 +1.1 1,965,316 - Synpcc7942_1892 0.43 +1.3 1,965,336 + Synpcc7942_1892 0.45 -0.0 1,965,337 + Synpcc7942_1892 0.45 +1.6 1,965,337 + Synpcc7942_1892 0.45 +2.3 1,965,344 - Synpcc7942_1892 0.46 -1.6 1,965,344 - Synpcc7942_1892 0.46 +0.1 1,965,345 - Synpcc7942_1892 0.46 +2.0 1,965,345 - Synpcc7942_1892 0.46 +0.6 1,965,345 - Synpcc7942_1892 0.46 +1.1 1,965,345 - Synpcc7942_1892 0.46 -2.3 1,965,352 + Synpcc7942_1892 0.47 +1.6 1,965,355 - Synpcc7942_1892 0.48 +2.4 1,965,446 + Synpcc7942_1892 0.59 +1.7 1,965,452 + Synpcc7942_1892 0.60 +2.3 1,965,460 - Synpcc7942_1892 0.61 -0.4 1,965,498 - Synpcc7942_1892 0.65 +2.2 1,965,498 - Synpcc7942_1892 0.65 +2.8 1,965,513 + Synpcc7942_1892 0.67 +2.0 1,965,521 + Synpcc7942_1892 0.68 +2.3 1,965,542 - Synpcc7942_1892 0.71 +0.6 1,965,542 - Synpcc7942_1892 0.71 +1.5 1,965,600 - Synpcc7942_1892 0.78 -1.6 1,965,634 - Synpcc7942_1892 0.82 +1.2 1,965,691 + Synpcc7942_1892 0.89 +1.1 1,965,750 - -0.9 1,965,757 + -0.2 1,965,790 - +1.2 1,965,813 - -0.3 1,965,876 - natA Synpcc7942_1893 0.16 +1.3 1,965,882 + natA Synpcc7942_1893 0.16 -3.2 1,965,894 - natA Synpcc7942_1893 0.18 +1.9 1,965,909 + natA Synpcc7942_1893 0.20 +1.2 1,965,909 + natA Synpcc7942_1893 0.20 +3.4 1,965,909 + natA Synpcc7942_1893 0.20 -0.7 1,965,926 + natA Synpcc7942_1893 0.22 +0.7 1,965,963 + natA Synpcc7942_1893 0.27 -0.5 1,965,963 + natA Synpcc7942_1893 0.27 +1.2 1,965,963 + natA Synpcc7942_1893 0.27 +0.7 1,965,963 + natA Synpcc7942_1893 0.27 +0.6 1,965,963 + natA Synpcc7942_1893 0.27 +1.9 1,965,963 + natA Synpcc7942_1893 0.27 -0.9 1,965,963 + natA Synpcc7942_1893 0.27 +0.9 1,965,971 - natA Synpcc7942_1893 0.28 -1.3 1,965,971 - natA Synpcc7942_1893 0.28 +0.1 1,965,971 - natA Synpcc7942_1893 0.28 +1.2 1,965,971 - natA Synpcc7942_1893 0.28 +0.8 1,965,971 - natA Synpcc7942_1893 0.28 -0.1 1,965,971 - natA Synpcc7942_1893 0.28 -0.5 1,965,971 - natA Synpcc7942_1893 0.28 -1.5 1,965,971 - natA Synpcc7942_1893 0.28 +0.4 1,965,971 - natA Synpcc7942_1893 0.28 +1.1 1,965,971 - natA Synpcc7942_1893 0.28 +2.7 1,965,999 - natA Synpcc7942_1893 0.32 -1.2 1,966,036 + natA Synpcc7942_1893 0.36 +1.1 1,966,042 - natA Synpcc7942_1893 0.37 -0.5 1,966,043 + natA Synpcc7942_1893 0.37 -0.7 1,966,058 + natA Synpcc7942_1893 0.39 -0.1 1,966,067 - natA Synpcc7942_1893 0.40 -3.5 1,966,073 + natA Synpcc7942_1893 0.41 +0.9 1,966,073 + natA Synpcc7942_1893 0.41 +0.2 1,966,081 - natA Synpcc7942_1893 0.42 -1.0 1,966,086 - natA Synpcc7942_1893 0.43 +1.7 1,966,114 - natA Synpcc7942_1893 0.46 +1.3 1,966,137 + natA Synpcc7942_1893 0.49 -2.5 1,966,137 + natA Synpcc7942_1893 0.49 +1.8 1,966,145 - natA Synpcc7942_1893 0.50 +0.2 1,966,146 - natA Synpcc7942_1893 0.50 +0.3 1,966,146 - natA Synpcc7942_1893 0.50 +0.7 1,966,146 - natA Synpcc7942_1893 0.50 +1.5 1,966,203 + natA Synpcc7942_1893 0.58 +0.8 1,966,211 - natA Synpcc7942_1893 0.59 -2.7 1,966,211 - natA Synpcc7942_1893 0.59 -0.5 1,966,211 - natA Synpcc7942_1893 0.59 +0.1 1,966,211 - natA Synpcc7942_1893 0.59 +2.5 1,966,228 + natA Synpcc7942_1893 0.61 +0.8 1,966,236 - natA Synpcc7942_1893 0.62 +0.2 1,966,236 - natA Synpcc7942_1893 0.62 +2.1 1,966,236 - natA Synpcc7942_1893 0.62 +1.0 1,966,271 + natA Synpcc7942_1893 0.67 +0.5 1,966,276 + natA Synpcc7942_1893 0.67 +1.9 1,966,288 - natA Synpcc7942_1893 0.69 -2.3 1,966,304 + natA Synpcc7942_1893 0.71 -0.3 1,966,342 - natA Synpcc7942_1893 0.76 +0.5 1,966,364 - natA Synpcc7942_1893 0.79 +1.3 1,966,372 - natA Synpcc7942_1893 0.80 +0.8 1,966,375 - natA Synpcc7942_1893 0.80 +1.1 1,966,411 - natA Synpcc7942_1893 0.85 +1.6 1,966,439 + natA Synpcc7942_1893 0.88 -1.8 1,966,456 + +0.1 1,966,494 + +1.4 1,966,494 + +1.3 1,966,511 + +0.3 1,966,519 - -3.2 1,966,540 - +0.2 1,966,584 + -1.0 1,966,592 + -1.9 1,966,595 - +1.2 1,966,609 - +1.3 1,966,626 + +1.3 1,966,645 - natC Synpcc7942_1894 0.12 -2.6 1,966,675 + natC Synpcc7942_1894 0.14 +1.1 1,966,679 + natC Synpcc7942_1894 0.15 +1.0 1,966,687 + natC Synpcc7942_1894 0.15 +1.1 1,966,687 - natC Synpcc7942_1894 0.15 +1.6 1,966,703 + natC Synpcc7942_1894 0.17 -3.4 1,966,703 + natC Synpcc7942_1894 0.17 +1.3 1,966,703 + natC Synpcc7942_1894 0.17 +1.8 1,966,703 + natC Synpcc7942_1894 0.17 -3.2 1,966,703 + natC Synpcc7942_1894 0.17 -2.3 1,966,703 + natC Synpcc7942_1894 0.17 +1.1 1,966,703 + natC Synpcc7942_1894 0.17 -1.6 1,966,703 + natC Synpcc7942_1894 0.17 -0.6 1,966,703 + natC Synpcc7942_1894 0.17 +1.4 1,966,703 + natC Synpcc7942_1894 0.17 +0.2 1,966,703 + natC Synpcc7942_1894 0.17 +0.6 1,966,703 + natC Synpcc7942_1894 0.17 +1.3 1,966,703 + natC Synpcc7942_1894 0.17 +1.0 1,966,711 - natC Synpcc7942_1894 0.18 -4.0 1,966,711 - natC Synpcc7942_1894 0.18 +0.4 1,966,711 - natC Synpcc7942_1894 0.18 -2.5 1,966,711 - -0.6 1,966,711 - natC Synpcc7942_1894 0.18 +0.3 1,966,711 - natC Synpcc7942_1894 0.18 +1.0 1,966,711 - natC Synpcc7942_1894 0.18 +1.5 1,966,711 - natC Synpcc7942_1894 0.18 +1.2 1,966,711 - natC Synpcc7942_1894 0.18 +1.0 1,966,713 + natC Synpcc7942_1894 0.18 -3.8 1,966,722 - natC Synpcc7942_1894 0.19 +1.6 1,966,722 - natC Synpcc7942_1894 0.19 +1.2 1,966,729 - natC Synpcc7942_1894 0.19 +1.1 1,966,731 + natC Synpcc7942_1894 0.20 +1.0 1,966,736 + natC Synpcc7942_1894 0.20 -0.8 1,966,741 + natC Synpcc7942_1894 0.20 +1.4 1,966,759 + natC Synpcc7942_1894 0.22 -2.6 1,966,766 + natC Synpcc7942_1894 0.23 +1.1 1,966,767 - natC Synpcc7942_1894 0.23 +0.2 1,966,767 - natC Synpcc7942_1894 0.23 -0.6
Or see this region's nucleotide sequence