Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1747 and Synpcc7942_1748 are separated by 27 nucleotides Synpcc7942_1748 and fer are separated by 2 nucleotides fer and ycf35 overlap by 1 nucleotides ycf35 and Synpcc7942_1751 are separated by 42 nucleotides Synpcc7942_1751 and Synpcc7942_1752 are separated by 239 nucleotides
Synpcc7942_1747: Synpcc7942_1747 - hypothetical protein, at 1,817,778 to 1,818,962
_1747
Synpcc7942_1748: Synpcc7942_1748 - hypothetical protein, at 1,818,990 to 1,819,751
_1748
Synpcc7942_1749: fer - ferredoxin, at 1,819,754 to 1,820,146
fer
Synpcc7942_1750: ycf35 - conserved hypothetical protein YCF35, at 1,820,146 to 1,820,532
ycf35
Synpcc7942_1751: Synpcc7942_1751 - hypothetical protein, at 1,820,575 to 1,820,778
_1751
Synpcc7942_1752: Synpcc7942_1752 - Armadillo:PBS lyase HEAT-like repeat, at 1,821,018 to 1,821,770
_1752
Position (kb) 1819
1820
1821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1818.758 kb on + strand, within Synpcc7942_1747 at 1818.766 kb on - strand, within Synpcc7942_1747 at 1818.790 kb on + strand, within Synpcc7942_1747 at 1818.792 kb on - strand, within Synpcc7942_1747 at 1818.809 kb on - strand, within Synpcc7942_1747 at 1818.809 kb on - strand, within Synpcc7942_1747 at 1818.838 kb on - strand, within Synpcc7942_1747 at 1818.838 kb on - strand, within Synpcc7942_1747 at 1818.848 kb on - strand at 1818.853 kb on + strand at 1818.979 kb on + strand at 1818.987 kb on - strand at 1818.987 kb on - strand at 1818.990 kb on - strand at 1819.050 kb on - strand at 1819.064 kb on - strand at 1819.071 kb on - strand, within Synpcc7942_1748 at 1819.077 kb on - strand, within Synpcc7942_1748 at 1819.093 kb on - strand, within Synpcc7942_1748 at 1819.114 kb on + strand, within Synpcc7942_1748 at 1819.147 kb on + strand, within Synpcc7942_1748 at 1819.150 kb on - strand, within Synpcc7942_1748 at 1819.182 kb on + strand, within Synpcc7942_1748 at 1819.189 kb on + strand, within Synpcc7942_1748 at 1819.196 kb on + strand, within Synpcc7942_1748 at 1819.223 kb on + strand, within Synpcc7942_1748 at 1819.231 kb on - strand, within Synpcc7942_1748 at 1819.231 kb on - strand, within Synpcc7942_1748 at 1819.234 kb on + strand, within Synpcc7942_1748 at 1819.245 kb on + strand, within Synpcc7942_1748 at 1819.251 kb on + strand, within Synpcc7942_1748 at 1819.254 kb on - strand, within Synpcc7942_1748 at 1819.259 kb on - strand, within Synpcc7942_1748 at 1819.264 kb on - strand, within Synpcc7942_1748 at 1819.264 kb on - strand, within Synpcc7942_1748 at 1819.337 kb on + strand, within Synpcc7942_1748 at 1819.337 kb on + strand, within Synpcc7942_1748 at 1819.346 kb on + strand, within Synpcc7942_1748 at 1819.347 kb on + strand, within Synpcc7942_1748 at 1819.347 kb on + strand, within Synpcc7942_1748 at 1819.355 kb on - strand, within Synpcc7942_1748 at 1819.355 kb on - strand, within Synpcc7942_1748 at 1819.355 kb on - strand, within Synpcc7942_1748 at 1819.359 kb on + strand, within Synpcc7942_1748 at 1819.397 kb on - strand, within Synpcc7942_1748 at 1819.408 kb on + strand, within Synpcc7942_1748 at 1819.408 kb on + strand, within Synpcc7942_1748 at 1819.416 kb on - strand, within Synpcc7942_1748 at 1819.416 kb on - strand, within Synpcc7942_1748 at 1819.416 kb on - strand, within Synpcc7942_1748 at 1819.463 kb on - strand, within Synpcc7942_1748 at 1819.475 kb on + strand, within Synpcc7942_1748 at 1819.475 kb on + strand, within Synpcc7942_1748 at 1819.475 kb on + strand, within Synpcc7942_1748 at 1819.477 kb on + strand, within Synpcc7942_1748 at 1819.483 kb on - strand, within Synpcc7942_1748 at 1819.483 kb on - strand, within Synpcc7942_1748 at 1819.483 kb on - strand, within Synpcc7942_1748 at 1819.512 kb on - strand, within Synpcc7942_1748 at 1819.536 kb on - strand, within Synpcc7942_1748 at 1819.550 kb on - strand, within Synpcc7942_1748 at 1819.581 kb on + strand, within Synpcc7942_1748 at 1819.589 kb on - strand, within Synpcc7942_1748 at 1819.618 kb on - strand, within Synpcc7942_1748 at 1819.624 kb on + strand, within Synpcc7942_1748 at 1819.655 kb on - strand, within Synpcc7942_1748 at 1819.659 kb on - strand, within Synpcc7942_1748 at 1819.759 kb on - strand at 1819.781 kb on + strand at 1819.801 kb on - strand, within fer at 1819.850 kb on + strand, within fer at 1819.852 kb on + strand, within fer at 1819.852 kb on + strand, within fer at 1819.873 kb on + strand, within fer at 1819.883 kb on + strand, within fer at 1819.891 kb on - strand, within fer at 1819.891 kb on - strand, within fer at 1819.928 kb on - strand, within fer at 1819.946 kb on + strand, within fer at 1819.962 kb on + strand, within fer at 1819.969 kb on + strand, within fer at 1819.970 kb on - strand, within fer at 1819.992 kb on + strand, within fer at 1820.002 kb on + strand, within fer at 1820.007 kb on + strand, within fer at 1820.020 kb on + strand, within fer at 1820.033 kb on - strand, within fer at 1820.047 kb on + strand, within fer at 1820.047 kb on + strand, within fer at 1820.055 kb on - strand, within fer at 1820.059 kb on + strand, within fer at 1820.059 kb on + strand, within fer at 1820.067 kb on - strand, within fer at 1820.142 kb on + strand at 1820.143 kb on + strand at 1820.143 kb on + strand at 1820.149 kb on - strand at 1820.201 kb on - strand, within ycf35 at 1820.218 kb on + strand, within ycf35 at 1820.218 kb on - strand, within ycf35 at 1820.227 kb on - strand, within ycf35 at 1820.236 kb on + strand, within ycf35 at 1820.244 kb on - strand, within ycf35 at 1820.249 kb on - strand, within ycf35 at 1820.263 kb on - strand at 1820.265 kb on + strand, within ycf35 at 1820.301 kb on - strand, within ycf35 at 1820.302 kb on - strand, within ycf35 at 1820.323 kb on + strand, within ycf35 at 1820.330 kb on + strand, within ycf35 at 1820.331 kb on + strand, within ycf35 at 1820.338 kb on - strand, within ycf35 at 1820.339 kb on - strand, within ycf35 at 1820.339 kb on - strand, within ycf35 at 1820.346 kb on - strand, within ycf35 at 1820.348 kb on + strand, within ycf35 at 1820.372 kb on + strand, within ycf35 at 1820.422 kb on - strand, within ycf35 at 1820.425 kb on - strand, within ycf35 at 1820.432 kb on + strand, within ycf35 at 1820.432 kb on + strand at 1820.432 kb on + strand, within ycf35 at 1820.440 kb on - strand, within ycf35 at 1820.493 kb on + strand, within ycf35 at 1820.518 kb on + strand at 1820.526 kb on - strand at 1820.530 kb on + strand at 1820.545 kb on - strand at 1820.567 kb on - strand at 1820.605 kb on + strand, within Synpcc7942_1751 at 1820.641 kb on - strand, within Synpcc7942_1751 at 1820.656 kb on - strand, within Synpcc7942_1751 at 1820.656 kb on - strand, within Synpcc7942_1751 at 1820.662 kb on + strand, within Synpcc7942_1751 at 1820.686 kb on + strand, within Synpcc7942_1751 at 1820.693 kb on + strand, within Synpcc7942_1751 at 1820.693 kb on + strand, within Synpcc7942_1751 at 1820.696 kb on - strand, within Synpcc7942_1751 at 1820.705 kb on + strand, within Synpcc7942_1751 at 1820.886 kb on + strand at 1820.886 kb on + strand at 1820.886 kb on + strand at 1820.886 kb on + strand at 1820.886 kb on + strand at 1820.886 kb on + strand at 1820.894 kb on - strand at 1820.894 kb on - strand at 1820.894 kb on - strand at 1820.894 kb on - strand at 1820.894 kb on - strand at 1820.894 kb on - strand at 1820.898 kb on + strand at 1820.959 kb on + strand at 1820.968 kb on + strand at 1820.974 kb on + strand at 1820.977 kb on + strand at 1820.985 kb on - strand at 1821.017 kb on - strand at 1821.017 kb on - strand at 1821.022 kb on - strand at 1821.022 kb on - strand at 1821.024 kb on + strand at 1821.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,818,758 + Synpcc7942_1747 0.83 +1.5 1,818,766 - Synpcc7942_1747 0.83 -0.1 1,818,790 + Synpcc7942_1747 0.85 +1.3 1,818,792 - Synpcc7942_1747 0.86 -0.8 1,818,809 - Synpcc7942_1747 0.87 -0.4 1,818,809 - Synpcc7942_1747 0.87 -3.2 1,818,838 - Synpcc7942_1747 0.89 +0.1 1,818,838 - Synpcc7942_1747 0.89 -2.7 1,818,848 - +0.1 1,818,853 + +0.4 1,818,979 + +0.6 1,818,987 - -2.4 1,818,987 - +0.9 1,818,990 - -2.4 1,819,050 - -1.1 1,819,064 - +0.8 1,819,071 - Synpcc7942_1748 0.11 -3.1 1,819,077 - Synpcc7942_1748 0.11 -1.9 1,819,093 - Synpcc7942_1748 0.14 +1.4 1,819,114 + Synpcc7942_1748 0.16 -1.0 1,819,147 + Synpcc7942_1748 0.21 -0.3 1,819,150 - Synpcc7942_1748 0.21 +1.3 1,819,182 + Synpcc7942_1748 0.25 +0.8 1,819,189 + Synpcc7942_1748 0.26 +1.0 1,819,196 + Synpcc7942_1748 0.27 -1.4 1,819,223 + Synpcc7942_1748 0.31 -0.2 1,819,231 - Synpcc7942_1748 0.32 +0.4 1,819,231 - Synpcc7942_1748 0.32 -0.5 1,819,234 + Synpcc7942_1748 0.32 +0.3 1,819,245 + Synpcc7942_1748 0.33 +0.2 1,819,251 + Synpcc7942_1748 0.34 +1.1 1,819,254 - Synpcc7942_1748 0.35 +0.4 1,819,259 - Synpcc7942_1748 0.35 +0.0 1,819,264 - Synpcc7942_1748 0.36 +0.8 1,819,264 - Synpcc7942_1748 0.36 -0.3 1,819,337 + Synpcc7942_1748 0.46 -0.4 1,819,337 + Synpcc7942_1748 0.46 -1.2 1,819,346 + Synpcc7942_1748 0.47 -2.7 1,819,347 + Synpcc7942_1748 0.47 -0.8 1,819,347 + Synpcc7942_1748 0.47 +1.1 1,819,355 - Synpcc7942_1748 0.48 -2.2 1,819,355 - Synpcc7942_1748 0.48 -2.2 1,819,355 - Synpcc7942_1748 0.48 +1.0 1,819,359 + Synpcc7942_1748 0.48 -0.1 1,819,397 - Synpcc7942_1748 0.53 +3.4 1,819,408 + Synpcc7942_1748 0.55 +1.2 1,819,408 + Synpcc7942_1748 0.55 -0.2 1,819,416 - Synpcc7942_1748 0.56 -0.4 1,819,416 - Synpcc7942_1748 0.56 -0.0 1,819,416 - Synpcc7942_1748 0.56 +0.0 1,819,463 - Synpcc7942_1748 0.62 -0.4 1,819,475 + Synpcc7942_1748 0.64 -1.0 1,819,475 + Synpcc7942_1748 0.64 -0.1 1,819,475 + Synpcc7942_1748 0.64 -1.1 1,819,477 + Synpcc7942_1748 0.64 -1.6 1,819,483 - Synpcc7942_1748 0.65 -3.5 1,819,483 - Synpcc7942_1748 0.65 -3.9 1,819,483 - Synpcc7942_1748 0.65 +0.4 1,819,512 - Synpcc7942_1748 0.69 -0.8 1,819,536 - Synpcc7942_1748 0.72 -0.4 1,819,550 - Synpcc7942_1748 0.73 -3.2 1,819,581 + Synpcc7942_1748 0.78 +1.3 1,819,589 - Synpcc7942_1748 0.79 +0.6 1,819,618 - Synpcc7942_1748 0.82 +1.2 1,819,624 + Synpcc7942_1748 0.83 -4.0 1,819,655 - Synpcc7942_1748 0.87 -0.6 1,819,659 - Synpcc7942_1748 0.88 +0.6 1,819,759 - +1.3 1,819,781 + -0.8 1,819,801 - fer Synpcc7942_1749 0.12 -1.5 1,819,850 + fer Synpcc7942_1749 0.24 -1.3 1,819,852 + fer Synpcc7942_1749 0.25 -2.7 1,819,852 + fer Synpcc7942_1749 0.25 -2.0 1,819,873 + fer Synpcc7942_1749 0.30 -1.6 1,819,883 + fer Synpcc7942_1749 0.33 -1.4 1,819,891 - fer Synpcc7942_1749 0.35 -0.5 1,819,891 - fer Synpcc7942_1749 0.35 -4.5 1,819,928 - fer Synpcc7942_1749 0.44 -2.3 1,819,946 + fer Synpcc7942_1749 0.49 -2.3 1,819,962 + fer Synpcc7942_1749 0.53 -0.9 1,819,969 + fer Synpcc7942_1749 0.55 -1.0 1,819,970 - fer Synpcc7942_1749 0.55 +0.2 1,819,992 + fer Synpcc7942_1749 0.61 -0.6 1,820,002 + fer Synpcc7942_1749 0.63 -3.6 1,820,007 + fer Synpcc7942_1749 0.64 +0.2 1,820,020 + fer Synpcc7942_1749 0.68 -0.6 1,820,033 - fer Synpcc7942_1749 0.71 -0.1 1,820,047 + fer Synpcc7942_1749 0.75 +0.3 1,820,047 + fer Synpcc7942_1749 0.75 -0.2 1,820,055 - fer Synpcc7942_1749 0.77 -2.3 1,820,059 + fer Synpcc7942_1749 0.78 -1.6 1,820,059 + fer Synpcc7942_1749 0.78 -1.2 1,820,067 - fer Synpcc7942_1749 0.80 -2.4 1,820,142 + -0.2 1,820,143 + +0.4 1,820,143 + +0.5 1,820,149 - -0.2 1,820,201 - ycf35 Synpcc7942_1750 0.14 -1.2 1,820,218 + ycf35 Synpcc7942_1750 0.19 -3.5 1,820,218 - ycf35 Synpcc7942_1750 0.19 -1.2 1,820,227 - ycf35 Synpcc7942_1750 0.21 -3.3 1,820,236 + ycf35 Synpcc7942_1750 0.23 -2.3 1,820,244 - ycf35 Synpcc7942_1750 0.25 -2.9 1,820,249 - ycf35 Synpcc7942_1750 0.27 -1.4 1,820,263 - +3.8 1,820,265 + ycf35 Synpcc7942_1750 0.31 -1.0 1,820,301 - ycf35 Synpcc7942_1750 0.40 -2.0 1,820,302 - ycf35 Synpcc7942_1750 0.40 +1.7 1,820,323 + ycf35 Synpcc7942_1750 0.46 -1.4 1,820,330 + ycf35 Synpcc7942_1750 0.48 +1.4 1,820,331 + ycf35 Synpcc7942_1750 0.48 -2.1 1,820,338 - ycf35 Synpcc7942_1750 0.50 -0.6 1,820,339 - ycf35 Synpcc7942_1750 0.50 +0.0 1,820,339 - ycf35 Synpcc7942_1750 0.50 +1.0 1,820,346 - ycf35 Synpcc7942_1750 0.52 -1.9 1,820,348 + ycf35 Synpcc7942_1750 0.52 -0.6 1,820,372 + ycf35 Synpcc7942_1750 0.58 +0.5 1,820,422 - ycf35 Synpcc7942_1750 0.71 -3.3 1,820,425 - ycf35 Synpcc7942_1750 0.72 -1.2 1,820,432 + ycf35 Synpcc7942_1750 0.74 -1.4 1,820,432 + +2.5 1,820,432 + ycf35 Synpcc7942_1750 0.74 +0.8 1,820,440 - ycf35 Synpcc7942_1750 0.76 -0.4 1,820,493 + ycf35 Synpcc7942_1750 0.90 -1.7 1,820,518 + -0.0 1,820,526 - -1.4 1,820,530 + -0.3 1,820,545 - -0.1 1,820,567 - -0.8 1,820,605 + Synpcc7942_1751 0.15 -0.4 1,820,641 - Synpcc7942_1751 0.32 -0.9 1,820,656 - Synpcc7942_1751 0.40 -1.4 1,820,656 - Synpcc7942_1751 0.40 -0.2 1,820,662 + Synpcc7942_1751 0.43 -3.4 1,820,686 + Synpcc7942_1751 0.54 +2.0 1,820,693 + Synpcc7942_1751 0.58 -3.2 1,820,693 + Synpcc7942_1751 0.58 +0.4 1,820,696 - Synpcc7942_1751 0.59 -0.1 1,820,705 + Synpcc7942_1751 0.64 -1.6 1,820,886 + -0.2 1,820,886 + -0.2 1,820,886 + -0.3 1,820,886 + +1.0 1,820,886 + -0.5 1,820,886 + +1.1 1,820,894 - -2.1 1,820,894 - +1.6 1,820,894 - -3.5 1,820,894 - +1.1 1,820,894 - -0.4 1,820,894 - -2.4 1,820,898 + -2.6 1,820,959 + +0.1 1,820,968 + +0.3 1,820,974 + -0.2 1,820,977 + +0.5 1,820,985 - +0.5 1,821,017 - -2.8 1,821,017 - +1.2 1,821,022 - +0.1 1,821,022 - -0.8 1,821,024 + -2.6 1,821,046 + -3.4
Or see this region's nucleotide sequence