Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1720 and Synpcc7942_1721 are separated by 819 nucleotides Synpcc7942_1721 and sbpA are separated by 226 nucleotides
Synpcc7942_1720: Synpcc7942_1720 - hypothetical protein, at 1,791,952 to 1,792,392
_1720
Synpcc7942_1721: Synpcc7942_1721 - PBS lyase HEAT-like repeat, at 1,793,212 to 1,793,916
_1721
Synpcc7942_1722: sbpA - Thiosulphate-binding protein, at 1,794,143 to 1,795,228
sbpA
Position (kb) 1793
1794 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 1792.218 kb on - strand at 1792.218 kb on - strand, within Synpcc7942_1720 at 1792.218 kb on - strand, within Synpcc7942_1720 at 1792.220 kb on - strand, within Synpcc7942_1720 at 1792.307 kb on + strand, within Synpcc7942_1720 at 1792.309 kb on - strand at 1792.338 kb on - strand, within Synpcc7942_1720 at 1792.349 kb on + strand at 1792.359 kb on + strand at 1792.359 kb on + strand at 1792.359 kb on + strand at 1792.367 kb on - strand at 1792.367 kb on - strand at 1792.367 kb on - strand at 1792.367 kb on - strand at 1792.367 kb on - strand at 1792.395 kb on - strand at 1792.400 kb on - strand at 1792.430 kb on - strand at 1792.443 kb on - strand at 1792.450 kb on - strand at 1792.503 kb on - strand at 1792.551 kb on - strand at 1792.559 kb on + strand at 1792.560 kb on - strand at 1792.560 kb on - strand at 1792.561 kb on + strand at 1792.561 kb on + strand at 1792.564 kb on + strand at 1792.569 kb on - strand at 1792.569 kb on - strand at 1792.572 kb on - strand at 1792.572 kb on - strand at 1792.572 kb on - strand at 1792.626 kb on + strand at 1792.631 kb on + strand at 1792.767 kb on - strand at 1792.767 kb on - strand at 1792.768 kb on - strand at 1793.018 kb on - strand at 1793.078 kb on - strand at 1793.080 kb on + strand at 1793.091 kb on + strand at 1793.145 kb on + strand at 1793.239 kb on - strand at 1793.318 kb on + strand, within Synpcc7942_1721 at 1793.333 kb on + strand, within Synpcc7942_1721 at 1793.341 kb on - strand, within Synpcc7942_1721 at 1793.346 kb on + strand, within Synpcc7942_1721 at 1793.354 kb on + strand, within Synpcc7942_1721 at 1793.370 kb on + strand, within Synpcc7942_1721 at 1793.390 kb on + strand, within Synpcc7942_1721 at 1793.419 kb on - strand, within Synpcc7942_1721 at 1793.479 kb on - strand, within Synpcc7942_1721 at 1793.479 kb on - strand, within Synpcc7942_1721 at 1793.479 kb on - strand, within Synpcc7942_1721 at 1793.508 kb on + strand, within Synpcc7942_1721 at 1793.561 kb on + strand, within Synpcc7942_1721 at 1793.569 kb on - strand, within Synpcc7942_1721 at 1793.576 kb on + strand, within Synpcc7942_1721 at 1793.576 kb on + strand, within Synpcc7942_1721 at 1793.584 kb on - strand, within Synpcc7942_1721 at 1793.584 kb on - strand, within Synpcc7942_1721 at 1793.584 kb on - strand, within Synpcc7942_1721 at 1793.585 kb on - strand, within Synpcc7942_1721 at 1793.639 kb on - strand, within Synpcc7942_1721 at 1793.639 kb on - strand, within Synpcc7942_1721 at 1793.649 kb on - strand, within Synpcc7942_1721 at 1793.719 kb on - strand, within Synpcc7942_1721 at 1793.730 kb on + strand, within Synpcc7942_1721 at 1793.885 kb on + strand at 1793.909 kb on - strand at 1793.909 kb on - strand at 1793.933 kb on - strand at 1793.940 kb on + strand at 1793.995 kb on + strand at 1794.010 kb on - strand at 1794.026 kb on + strand at 1794.079 kb on - strand at 1794.098 kb on - strand at 1794.120 kb on - strand at 1794.131 kb on + strand at 1794.131 kb on + strand at 1794.131 kb on + strand at 1794.131 kb on + strand at 1794.138 kb on - strand at 1794.138 kb on - strand at 1794.138 kb on - strand at 1794.139 kb on - strand at 1794.149 kb on + strand at 1794.157 kb on - strand at 1794.204 kb on + strand at 1794.219 kb on - strand at 1794.225 kb on + strand at 1794.226 kb on - strand at 1794.227 kb on + strand at 1794.256 kb on - strand, within sbpA at 1794.296 kb on + strand, within sbpA at 1794.332 kb on + strand, within sbpA at 1794.332 kb on - strand, within sbpA at 1794.333 kb on - strand, within sbpA at 1794.333 kb on - strand, within sbpA at 1794.338 kb on - strand, within sbpA at 1794.340 kb on - strand, within sbpA at 1794.340 kb on - strand, within sbpA at 1794.366 kb on + strand, within sbpA at 1794.374 kb on - strand, within sbpA at 1794.374 kb on - strand, within sbpA at 1794.434 kb on - strand, within sbpA at 1794.434 kb on - strand, within sbpA at 1794.434 kb on - strand, within sbpA at 1794.434 kb on - strand, within sbpA at 1794.452 kb on + strand, within sbpA at 1794.457 kb on + strand, within sbpA at 1794.457 kb on - strand, within sbpA at 1794.473 kb on - strand, within sbpA at 1794.473 kb on - strand, within sbpA at 1794.558 kb on + strand, within sbpA at 1794.566 kb on - strand, within sbpA at 1794.569 kb on + strand, within sbpA at 1794.581 kb on + strand, within sbpA at 1794.581 kb on + strand, within sbpA at 1794.581 kb on + strand at 1794.621 kb on - strand, within sbpA at 1794.621 kb on - strand, within sbpA at 1794.624 kb on + strand, within sbpA at 1794.624 kb on + strand, within sbpA at 1794.624 kb on + strand, within sbpA at 1794.632 kb on - strand, within sbpA at 1794.632 kb on - strand, within sbpA at 1794.652 kb on - strand, within sbpA at 1794.712 kb on + strand, within sbpA at 1794.766 kb on - strand, within sbpA at 1794.794 kb on - strand, within sbpA at 1794.796 kb on + strand, within sbpA at 1794.796 kb on + strand, within sbpA at 1794.844 kb on - strand, within sbpA at 1794.878 kb on + strand, within sbpA at 1794.897 kb on + strand, within sbpA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,792,218 - -1.2 1,792,218 - Synpcc7942_1720 0.60 +2.4 1,792,218 - Synpcc7942_1720 0.60 +0.2 1,792,220 - Synpcc7942_1720 0.61 -2.3 1,792,307 + Synpcc7942_1720 0.80 -1.8 1,792,309 - +2.2 1,792,338 - Synpcc7942_1720 0.88 -2.9 1,792,349 + -0.4 1,792,359 + -1.5 1,792,359 + -1.0 1,792,359 + -1.2 1,792,367 - -1.2 1,792,367 - -0.1 1,792,367 - -0.0 1,792,367 - -0.7 1,792,367 - +0.2 1,792,395 - +0.7 1,792,400 - -0.7 1,792,430 - -1.1 1,792,443 - -2.3 1,792,450 - -3.2 1,792,503 - -2.5 1,792,551 - -5.9 1,792,559 + -3.0 1,792,560 - -2.4 1,792,560 - -2.3 1,792,561 + -3.0 1,792,561 + -1.2 1,792,564 + -3.4 1,792,569 - -3.2 1,792,569 - -4.2 1,792,572 - -3.0 1,792,572 - -2.6 1,792,572 - -3.8 1,792,626 + -4.0 1,792,631 + -2.0 1,792,767 - -1.2 1,792,767 - -0.9 1,792,768 - -0.0 1,793,018 - +0.8 1,793,078 - +0.2 1,793,080 + -2.6 1,793,091 + -1.5 1,793,145 + -0.2 1,793,239 - -2.1 1,793,318 + Synpcc7942_1721 0.15 -2.0 1,793,333 + Synpcc7942_1721 0.17 +0.7 1,793,341 - Synpcc7942_1721 0.18 +0.5 1,793,346 + Synpcc7942_1721 0.19 -3.8 1,793,354 + Synpcc7942_1721 0.20 -0.6 1,793,370 + Synpcc7942_1721 0.22 -2.2 1,793,390 + Synpcc7942_1721 0.25 +1.7 1,793,419 - Synpcc7942_1721 0.29 -3.4 1,793,479 - Synpcc7942_1721 0.38 +2.3 1,793,479 - Synpcc7942_1721 0.38 -2.9 1,793,479 - Synpcc7942_1721 0.38 +1.6 1,793,508 + Synpcc7942_1721 0.42 +0.4 1,793,561 + Synpcc7942_1721 0.50 +1.2 1,793,569 - Synpcc7942_1721 0.51 -1.7 1,793,576 + Synpcc7942_1721 0.52 +1.1 1,793,576 + Synpcc7942_1721 0.52 +1.2 1,793,584 - Synpcc7942_1721 0.53 +0.0 1,793,584 - Synpcc7942_1721 0.53 -1.2 1,793,584 - Synpcc7942_1721 0.53 -2.1 1,793,585 - Synpcc7942_1721 0.53 -2.3 1,793,639 - Synpcc7942_1721 0.61 -2.5 1,793,639 - Synpcc7942_1721 0.61 +0.4 1,793,649 - Synpcc7942_1721 0.62 +1.7 1,793,719 - Synpcc7942_1721 0.72 +0.5 1,793,730 + Synpcc7942_1721 0.73 -0.2 1,793,885 + -4.4 1,793,909 - -3.4 1,793,909 - -0.6 1,793,933 - -0.6 1,793,940 + -0.2 1,793,995 + +2.7 1,794,010 - +0.8 1,794,026 + +0.4 1,794,079 - +1.5 1,794,098 - -2.8 1,794,120 - -5.5 1,794,131 + +1.1 1,794,131 + -1.7 1,794,131 + -2.7 1,794,131 + -0.0 1,794,138 - +0.2 1,794,138 - +1.8 1,794,138 - -0.1 1,794,139 - -1.1 1,794,149 + -2.0 1,794,157 - -2.8 1,794,204 + +0.6 1,794,219 - -3.6 1,794,225 + -0.1 1,794,226 - +1.7 1,794,227 + -1.4 1,794,256 - sbpA Synpcc7942_1722 0.10 +0.4 1,794,296 + sbpA Synpcc7942_1722 0.14 +1.3 1,794,332 + sbpA Synpcc7942_1722 0.17 +0.8 1,794,332 - sbpA Synpcc7942_1722 0.17 -2.4 1,794,333 - sbpA Synpcc7942_1722 0.17 -2.8 1,794,333 - sbpA Synpcc7942_1722 0.17 -0.4 1,794,338 - sbpA Synpcc7942_1722 0.18 +0.1 1,794,340 - sbpA Synpcc7942_1722 0.18 +1.2 1,794,340 - sbpA Synpcc7942_1722 0.18 +0.9 1,794,366 + sbpA Synpcc7942_1722 0.21 -1.7 1,794,374 - sbpA Synpcc7942_1722 0.21 -2.3 1,794,374 - sbpA Synpcc7942_1722 0.21 -0.2 1,794,434 - sbpA Synpcc7942_1722 0.27 -0.0 1,794,434 - sbpA Synpcc7942_1722 0.27 +1.3 1,794,434 - sbpA Synpcc7942_1722 0.27 +0.0 1,794,434 - sbpA Synpcc7942_1722 0.27 -3.0 1,794,452 + sbpA Synpcc7942_1722 0.28 +1.4 1,794,457 + sbpA Synpcc7942_1722 0.29 +0.1 1,794,457 - sbpA Synpcc7942_1722 0.29 -2.6 1,794,473 - sbpA Synpcc7942_1722 0.30 +0.1 1,794,473 - sbpA Synpcc7942_1722 0.30 -2.2 1,794,558 + sbpA Synpcc7942_1722 0.38 +1.1 1,794,566 - sbpA Synpcc7942_1722 0.39 -1.5 1,794,569 + sbpA Synpcc7942_1722 0.39 -3.2 1,794,581 + sbpA Synpcc7942_1722 0.40 +0.3 1,794,581 + sbpA Synpcc7942_1722 0.40 -0.4 1,794,581 + +0.2 1,794,621 - sbpA Synpcc7942_1722 0.44 +0.2 1,794,621 - sbpA Synpcc7942_1722 0.44 -1.2 1,794,624 + sbpA Synpcc7942_1722 0.44 -3.2 1,794,624 + sbpA Synpcc7942_1722 0.44 -0.2 1,794,624 + sbpA Synpcc7942_1722 0.44 +0.7 1,794,632 - sbpA Synpcc7942_1722 0.45 +1.0 1,794,632 - sbpA Synpcc7942_1722 0.45 -2.4 1,794,652 - sbpA Synpcc7942_1722 0.47 -2.0 1,794,712 + sbpA Synpcc7942_1722 0.52 +0.8 1,794,766 - sbpA Synpcc7942_1722 0.57 +1.3 1,794,794 - sbpA Synpcc7942_1722 0.60 -0.6 1,794,796 + sbpA Synpcc7942_1722 0.60 +1.7 1,794,796 + sbpA Synpcc7942_1722 0.60 +1.1 1,794,844 - sbpA Synpcc7942_1722 0.65 -0.6 1,794,878 + sbpA Synpcc7942_1722 0.68 +0.1 1,794,897 + sbpA Synpcc7942_1722 0.69 -1.1
Or see this region's nucleotide sequence