Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1704

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntams1 and Synpcc7942_1704 are separated by 6 nucleotidesSynpcc7942_1704 and psbI are separated by 112 nucleotidespsbI and Synpcc7942_1706 are separated by 168 nucleotides Synpcc7942_1703: ams1 - putative alpha-mannosidase, at 1,768,940 to 1,772,017 ams1 Synpcc7942_1704: Synpcc7942_1704 - hypothetical protein, at 1,772,024 to 1,772,833 _1704 Synpcc7942_1705: psbI - photosystem II reaction center I protein PsbI, at 1,772,946 to 1,773,065 psbI Synpcc7942_1706: Synpcc7942_1706 - hypothetical protein, at 1,773,234 to 1,775,426 _1706 Position (kb) 1772 1773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1771.031 kb on + strand, within ams1at 1771.031 kb on + strand, within ams1at 1771.039 kb on - strand, within ams1at 1771.039 kb on - strand, within ams1at 1771.039 kb on - strand, within ams1at 1771.042 kb on + strand, within ams1at 1771.042 kb on + strand, within ams1at 1771.042 kb on + strand, within ams1at 1771.045 kb on - strand, within ams1at 1771.050 kb on - strand, within ams1at 1771.050 kb on - strand, within ams1at 1771.082 kb on - strand, within ams1at 1771.131 kb on + strand, within ams1at 1771.153 kb on + strand, within ams1at 1771.163 kb on - strand, within ams1at 1771.163 kb on - strand, within ams1at 1771.163 kb on - strand, within ams1at 1771.163 kb on - strand, within ams1at 1771.184 kb on - strand, within ams1at 1771.185 kb on - strand, within ams1at 1771.185 kb on - strand, within ams1at 1771.199 kb on + strand, within ams1at 1771.210 kb on + strand, within ams1at 1771.210 kb on + strand, within ams1at 1771.230 kb on - strand, within ams1at 1771.251 kb on + strand, within ams1at 1771.251 kb on + strand, within ams1at 1771.259 kb on - strand, within ams1at 1771.259 kb on - strand, within ams1at 1771.259 kb on - strand, within ams1at 1771.283 kb on + strand, within ams1at 1771.340 kb on - strand, within ams1at 1771.400 kb on - strand, within ams1at 1771.400 kb on - strand, within ams1at 1771.400 kb on - strand, within ams1at 1771.411 kb on + strand, within ams1at 1771.442 kb on - strand, within ams1at 1771.442 kb on - strand, within ams1at 1771.442 kb on - strand, within ams1at 1771.455 kb on + strand, within ams1at 1771.455 kb on + strand, within ams1at 1771.455 kb on - strand, within ams1at 1771.457 kb on - strand, within ams1at 1771.463 kb on - strand, within ams1at 1771.467 kb on + strand, within ams1at 1771.472 kb on + strand, within ams1at 1771.475 kb on - strand, within ams1at 1771.506 kb on + strand, within ams1at 1771.514 kb on - strand, within ams1at 1771.535 kb on + strand, within ams1at 1771.535 kb on + strand, within ams1at 1771.543 kb on - strand, within ams1at 1771.563 kb on - strand, within ams1at 1771.621 kb on + strand, within ams1at 1771.652 kb on + strand, within ams1at 1771.660 kb on - strand, within ams1at 1771.673 kb on + strand, within ams1at 1771.674 kb on + strand, within ams1at 1771.698 kb on + strand, within ams1at 1771.706 kb on - strand, within ams1at 1771.726 kb on + strandat 1771.726 kb on + strandat 1771.737 kb on + strandat 1771.762 kb on - strandat 1771.772 kb on - strandat 1771.778 kb on - strandat 1771.788 kb on - strandat 1771.802 kb on + strandat 1771.819 kb on + strandat 1771.872 kb on - strandat 1771.887 kb on + strandat 1771.888 kb on - strandat 1771.888 kb on - strandat 1771.890 kb on - strandat 1771.904 kb on + strandat 1771.974 kb on + strandat 1771.982 kb on - strandat 1771.993 kb on + strandat 1771.993 kb on + strandat 1771.993 kb on + strandat 1772.031 kb on + strandat 1772.037 kb on + strandat 1772.045 kb on - strandat 1772.061 kb on + strandat 1772.061 kb on + strandat 1772.069 kb on - strandat 1772.069 kb on - strandat 1772.086 kb on - strandat 1772.118 kb on + strand, within Synpcc7942_1704at 1772.126 kb on - strand, within Synpcc7942_1704at 1772.147 kb on - strand, within Synpcc7942_1704at 1772.150 kb on + strand, within Synpcc7942_1704at 1772.150 kb on - strand, within Synpcc7942_1704at 1772.200 kb on + strand, within Synpcc7942_1704at 1772.227 kb on + strand, within Synpcc7942_1704at 1772.227 kb on + strand, within Synpcc7942_1704at 1772.227 kb on + strand, within Synpcc7942_1704at 1772.227 kb on + strand, within Synpcc7942_1704at 1772.227 kb on + strand, within Synpcc7942_1704at 1772.234 kb on + strand, within Synpcc7942_1704at 1772.235 kb on - strand, within Synpcc7942_1704at 1772.235 kb on - strandat 1772.237 kb on + strand, within Synpcc7942_1704at 1772.242 kb on - strand, within Synpcc7942_1704at 1772.242 kb on - strand, within Synpcc7942_1704at 1772.252 kb on - strand, within Synpcc7942_1704at 1772.274 kb on - strand, within Synpcc7942_1704at 1772.309 kb on - strand, within Synpcc7942_1704at 1772.334 kb on + strand, within Synpcc7942_1704at 1772.334 kb on + strandat 1772.342 kb on - strand, within Synpcc7942_1704at 1772.353 kb on - strand, within Synpcc7942_1704at 1772.366 kb on + strand, within Synpcc7942_1704at 1772.366 kb on + strand, within Synpcc7942_1704at 1772.467 kb on - strand, within Synpcc7942_1704at 1772.471 kb on + strand, within Synpcc7942_1704at 1772.493 kb on + strand, within Synpcc7942_1704at 1772.494 kb on - strand, within Synpcc7942_1704at 1772.505 kb on + strand, within Synpcc7942_1704at 1772.505 kb on + strand, within Synpcc7942_1704at 1772.528 kb on - strand, within Synpcc7942_1704at 1772.528 kb on - strand, within Synpcc7942_1704at 1772.528 kb on - strand, within Synpcc7942_1704at 1772.528 kb on - strand, within Synpcc7942_1704at 1772.537 kb on + strand, within Synpcc7942_1704at 1772.582 kb on + strand, within Synpcc7942_1704at 1772.591 kb on + strand, within Synpcc7942_1704at 1772.599 kb on - strand, within Synpcc7942_1704at 1772.628 kb on + strand, within Synpcc7942_1704at 1772.628 kb on + strand, within Synpcc7942_1704at 1772.640 kb on - strand, within Synpcc7942_1704at 1772.663 kb on + strand, within Synpcc7942_1704at 1772.663 kb on + strand, within Synpcc7942_1704at 1772.663 kb on + strand, within Synpcc7942_1704at 1772.671 kb on - strand, within Synpcc7942_1704at 1772.702 kb on + strand, within Synpcc7942_1704at 1772.718 kb on + strand, within Synpcc7942_1704at 1772.721 kb on + strand, within Synpcc7942_1704at 1772.752 kb on - strand, within Synpcc7942_1704at 1772.752 kb on - strand, within Synpcc7942_1704at 1772.775 kb on + strandat 1772.776 kb on - strandat 1772.778 kb on - strandat 1772.778 kb on - strandat 1772.778 kb on - strandat 1772.780 kb on + strandat 1772.781 kb on + strandat 1772.781 kb on + strandat 1772.789 kb on - strandat 1772.789 kb on - strandat 1772.791 kb on + strandat 1772.791 kb on + strandat 1772.802 kb on + strandat 1772.810 kb on - strandat 1772.817 kb on - strandat 1772.834 kb on - strandat 1772.845 kb on + strandat 1772.851 kb on + strandat 1772.853 kb on - strandat 1772.859 kb on - strandat 1772.859 kb on - strandat 1772.864 kb on + strandat 1772.869 kb on + strandat 1772.877 kb on - strandat 1772.877 kb on - strandat 1772.926 kb on - strandat 1772.997 kb on - strand, within psbIat 1773.116 kb on + strandat 1773.179 kb on - strandat 1773.199 kb on + strandat 1773.201 kb on + strandat 1773.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,771,031 + ams1 Synpcc7942_1703 0.68 -1.1
1,771,031 + ams1 Synpcc7942_1703 0.68 -2.9
1,771,039 - ams1 Synpcc7942_1703 0.68 -2.6
1,771,039 - ams1 Synpcc7942_1703 0.68 -3.1
1,771,039 - ams1 Synpcc7942_1703 0.68 -0.8
1,771,042 + ams1 Synpcc7942_1703 0.68 -2.2
1,771,042 + ams1 Synpcc7942_1703 0.68 -2.7
1,771,042 + ams1 Synpcc7942_1703 0.68 -3.3
1,771,045 - ams1 Synpcc7942_1703 0.68 -0.4
1,771,050 - ams1 Synpcc7942_1703 0.69 -2.9
1,771,050 - ams1 Synpcc7942_1703 0.69 -2.6
1,771,082 - ams1 Synpcc7942_1703 0.70 -2.1
1,771,131 + ams1 Synpcc7942_1703 0.71 -2.6
1,771,153 + ams1 Synpcc7942_1703 0.72 -2.8
1,771,163 - ams1 Synpcc7942_1703 0.72 -1.9
1,771,163 - ams1 Synpcc7942_1703 0.72 -2.2
1,771,163 - ams1 Synpcc7942_1703 0.72 -1.8
1,771,163 - ams1 Synpcc7942_1703 0.72 -2.1
1,771,184 - ams1 Synpcc7942_1703 0.73 -0.3
1,771,185 - ams1 Synpcc7942_1703 0.73 -0.4
1,771,185 - ams1 Synpcc7942_1703 0.73 -3.3
1,771,199 + ams1 Synpcc7942_1703 0.73 -2.8
1,771,210 + ams1 Synpcc7942_1703 0.74 -2.2
1,771,210 + ams1 Synpcc7942_1703 0.74 -0.6
1,771,230 - ams1 Synpcc7942_1703 0.74 -0.9
1,771,251 + ams1 Synpcc7942_1703 0.75 -2.8
1,771,251 + ams1 Synpcc7942_1703 0.75 -2.2
1,771,259 - ams1 Synpcc7942_1703 0.75 +1.6
1,771,259 - ams1 Synpcc7942_1703 0.75 -2.7
1,771,259 - ams1 Synpcc7942_1703 0.75 -2.1
1,771,283 + ams1 Synpcc7942_1703 0.76 -0.0
1,771,340 - ams1 Synpcc7942_1703 0.78 -1.9
1,771,400 - ams1 Synpcc7942_1703 0.80 -3.0
1,771,400 - ams1 Synpcc7942_1703 0.80 -1.2
1,771,400 - ams1 Synpcc7942_1703 0.80 -2.0
1,771,411 + ams1 Synpcc7942_1703 0.80 -2.1
1,771,442 - ams1 Synpcc7942_1703 0.81 -0.7
1,771,442 - ams1 Synpcc7942_1703 0.81 -0.8
1,771,442 - ams1 Synpcc7942_1703 0.81 -2.5
1,771,455 + ams1 Synpcc7942_1703 0.82 -3.2
1,771,455 + ams1 Synpcc7942_1703 0.82 -3.9
1,771,455 - ams1 Synpcc7942_1703 0.82 -1.6
1,771,457 - ams1 Synpcc7942_1703 0.82 -0.5
1,771,463 - ams1 Synpcc7942_1703 0.82 -2.5
1,771,467 + ams1 Synpcc7942_1703 0.82 -3.3
1,771,472 + ams1 Synpcc7942_1703 0.82 -1.6
1,771,475 - ams1 Synpcc7942_1703 0.82 -1.8
1,771,506 + ams1 Synpcc7942_1703 0.83 -2.3
1,771,514 - ams1 Synpcc7942_1703 0.84 -2.4
1,771,535 + ams1 Synpcc7942_1703 0.84 -2.1
1,771,535 + ams1 Synpcc7942_1703 0.84 -1.7
1,771,543 - ams1 Synpcc7942_1703 0.85 -2.2
1,771,563 - ams1 Synpcc7942_1703 0.85 -1.2
1,771,621 + ams1 Synpcc7942_1703 0.87 -3.3
1,771,652 + ams1 Synpcc7942_1703 0.88 -3.6
1,771,660 - ams1 Synpcc7942_1703 0.88 -2.5
1,771,673 + ams1 Synpcc7942_1703 0.89 -2.8
1,771,674 + ams1 Synpcc7942_1703 0.89 -3.4
1,771,698 + ams1 Synpcc7942_1703 0.90 -1.6
1,771,706 - ams1 Synpcc7942_1703 0.90 -2.3
1,771,726 + -3.4
1,771,726 + -4.1
1,771,737 + -3.3
1,771,762 - -1.4
1,771,772 - -1.9
1,771,778 - -3.6
1,771,788 - -2.0
1,771,802 + +0.9
1,771,819 + -2.9
1,771,872 - -2.0
1,771,887 + -3.8
1,771,888 - -0.5
1,771,888 - -3.3
1,771,890 - -3.5
1,771,904 + -1.7
1,771,974 + -1.9
1,771,982 - -0.9
1,771,993 + +0.8
1,771,993 + -1.2
1,771,993 + -1.5
1,772,031 + -1.0
1,772,037 + -2.5
1,772,045 - -2.7
1,772,061 + -2.6
1,772,061 + -2.1
1,772,069 - -2.6
1,772,069 - -0.9
1,772,086 - -0.2
1,772,118 + Synpcc7942_1704 0.12 -0.6
1,772,126 - Synpcc7942_1704 0.13 -0.5
1,772,147 - Synpcc7942_1704 0.15 -1.2
1,772,150 + Synpcc7942_1704 0.16 -0.3
1,772,150 - Synpcc7942_1704 0.16 -0.9
1,772,200 + Synpcc7942_1704 0.22 -2.2
1,772,227 + Synpcc7942_1704 0.25 +0.6
1,772,227 + Synpcc7942_1704 0.25 -0.9
1,772,227 + Synpcc7942_1704 0.25 +1.4
1,772,227 + Synpcc7942_1704 0.25 -0.5
1,772,227 + Synpcc7942_1704 0.25 -0.9
1,772,234 + Synpcc7942_1704 0.26 +1.7
1,772,235 - Synpcc7942_1704 0.26 -2.4
1,772,235 - -0.6
1,772,237 + Synpcc7942_1704 0.26 -4.4
1,772,242 - Synpcc7942_1704 0.27 -0.0
1,772,242 - Synpcc7942_1704 0.27 -1.8
1,772,252 - Synpcc7942_1704 0.28 -0.6
1,772,274 - Synpcc7942_1704 0.31 -1.4
1,772,309 - Synpcc7942_1704 0.35 +0.6
1,772,334 + Synpcc7942_1704 0.38 -0.9
1,772,334 + -1.9
1,772,342 - Synpcc7942_1704 0.39 -3.3
1,772,353 - Synpcc7942_1704 0.41 -0.6
1,772,366 + Synpcc7942_1704 0.42 -4.0
1,772,366 + Synpcc7942_1704 0.42 -0.5
1,772,467 - Synpcc7942_1704 0.55 -1.7
1,772,471 + Synpcc7942_1704 0.55 -0.2
1,772,493 + Synpcc7942_1704 0.58 -2.4
1,772,494 - Synpcc7942_1704 0.58 -0.2
1,772,505 + Synpcc7942_1704 0.59 -2.3
1,772,505 + Synpcc7942_1704 0.59 -1.2
1,772,528 - Synpcc7942_1704 0.62 -1.9
1,772,528 - Synpcc7942_1704 0.62 -1.5
1,772,528 - Synpcc7942_1704 0.62 -2.7
1,772,528 - Synpcc7942_1704 0.62 -1.1
1,772,537 + Synpcc7942_1704 0.63 -2.3
1,772,582 + Synpcc7942_1704 0.69 -0.6
1,772,591 + Synpcc7942_1704 0.70 +0.2
1,772,599 - Synpcc7942_1704 0.71 -0.2
1,772,628 + Synpcc7942_1704 0.75 -2.2
1,772,628 + Synpcc7942_1704 0.75 +0.4
1,772,640 - Synpcc7942_1704 0.76 -0.4
1,772,663 + Synpcc7942_1704 0.79 -2.0
1,772,663 + Synpcc7942_1704 0.79 -0.6
1,772,663 + Synpcc7942_1704 0.79 -2.9
1,772,671 - Synpcc7942_1704 0.80 -1.0
1,772,702 + Synpcc7942_1704 0.84 -2.9
1,772,718 + Synpcc7942_1704 0.86 -2.0
1,772,721 + Synpcc7942_1704 0.86 -1.4
1,772,752 - Synpcc7942_1704 0.90 -1.3
1,772,752 - Synpcc7942_1704 0.90 +0.4
1,772,775 + -0.3
1,772,776 - -0.4
1,772,778 - +1.2
1,772,778 - -2.4
1,772,778 - -2.7
1,772,780 + -1.4
1,772,781 + +0.0
1,772,781 + -1.5
1,772,789 - -2.2
1,772,789 - -3.0
1,772,791 + -1.9
1,772,791 + -2.1
1,772,802 + +0.3
1,772,810 - -1.0
1,772,817 - -3.4
1,772,834 - -0.2
1,772,845 + -1.7
1,772,851 + -0.9
1,772,853 - -2.1
1,772,859 - -2.0
1,772,859 - -2.5
1,772,864 + -0.2
1,772,869 + -2.1
1,772,877 - -0.2
1,772,877 - +1.0
1,772,926 - +1.4
1,772,997 - psbI Synpcc7942_1705 0.42 -0.1
1,773,116 + -1.9
1,773,179 - -2.7
1,773,199 + +0.3
1,773,201 + +0.2
1,773,206 - -3.7

Or see this region's nucleotide sequence