Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1699

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1697 and Synpcc7942_1698 are separated by 194 nucleotidesSynpcc7942_1698 and Synpcc7942_1699 are separated by 35 nucleotidesSynpcc7942_1699 and wcaG are separated by 52 nucleotides Synpcc7942_1697: Synpcc7942_1697 - Zn-finger, CDGSH type, at 1,764,611 to 1,764,892 _1697 Synpcc7942_1698: Synpcc7942_1698 - putative transcriptional regulator, at 1,765,087 to 1,765,428 _1698 Synpcc7942_1699: Synpcc7942_1699 - MATE efflux family protein, at 1,765,464 to 1,766,852 _1699 Synpcc7942_1700: wcaG - GDP-fucose synthetase NAD dependent epimerase/dehydratase, at 1,766,905 to 1,767,849 wcaG Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1764.473 kb on - strandat 1764.497 kb on - strandat 1764.511 kb on - strandat 1764.525 kb on - strandat 1764.536 kb on + strandat 1764.544 kb on - strandat 1764.577 kb on + strandat 1764.609 kb on + strandat 1764.623 kb on - strandat 1764.642 kb on - strand, within Synpcc7942_1697at 1764.657 kb on - strand, within Synpcc7942_1697at 1764.661 kb on + strand, within Synpcc7942_1697at 1764.667 kb on - strand, within Synpcc7942_1697at 1764.667 kb on - strand, within Synpcc7942_1697at 1764.705 kb on + strand, within Synpcc7942_1697at 1764.719 kb on - strand, within Synpcc7942_1697at 1764.729 kb on + strand, within Synpcc7942_1697at 1764.729 kb on + strand, within Synpcc7942_1697at 1764.737 kb on - strand, within Synpcc7942_1697at 1764.737 kb on - strand, within Synpcc7942_1697at 1764.737 kb on - strand, within Synpcc7942_1697at 1764.737 kb on - strand, within Synpcc7942_1697at 1764.737 kb on - strand, within Synpcc7942_1697at 1764.763 kb on + strand, within Synpcc7942_1697at 1764.773 kb on + strand, within Synpcc7942_1697at 1764.781 kb on - strand, within Synpcc7942_1697at 1764.781 kb on - strand, within Synpcc7942_1697at 1764.781 kb on - strand, within Synpcc7942_1697at 1764.797 kb on - strand, within Synpcc7942_1697at 1764.821 kb on + strand, within Synpcc7942_1697at 1764.821 kb on + strand, within Synpcc7942_1697at 1764.829 kb on + strand, within Synpcc7942_1697at 1764.829 kb on + strand, within Synpcc7942_1697at 1764.829 kb on + strand, within Synpcc7942_1697at 1764.837 kb on - strand, within Synpcc7942_1697at 1764.837 kb on - strand, within Synpcc7942_1697at 1764.867 kb on - strandat 1764.872 kb on - strandat 1764.890 kb on - strandat 1765.159 kb on + strand, within Synpcc7942_1698at 1765.197 kb on + strand, within Synpcc7942_1698at 1765.205 kb on - strand, within Synpcc7942_1698at 1765.258 kb on - strand, within Synpcc7942_1698at 1765.275 kb on - strand, within Synpcc7942_1698at 1765.297 kb on + strand, within Synpcc7942_1698at 1765.305 kb on - strand, within Synpcc7942_1698at 1765.305 kb on - strand, within Synpcc7942_1698at 1765.324 kb on - strand, within Synpcc7942_1698at 1765.332 kb on - strand, within Synpcc7942_1698at 1765.344 kb on + strand, within Synpcc7942_1698at 1765.344 kb on - strand, within Synpcc7942_1698at 1765.354 kb on - strand, within Synpcc7942_1698at 1765.364 kb on - strand, within Synpcc7942_1698at 1765.374 kb on - strand, within Synpcc7942_1698at 1765.386 kb on - strandat 1765.386 kb on - strand, within Synpcc7942_1698at 1765.398 kb on - strandat 1765.421 kb on + strandat 1765.424 kb on - strandat 1765.439 kb on + strandat 1765.439 kb on - strandat 1765.439 kb on - strandat 1765.491 kb on - strandat 1765.544 kb on + strandat 1765.556 kb on - strandat 1765.592 kb on + strandat 1765.605 kb on - strand, within Synpcc7942_1699at 1765.605 kb on - strand, within Synpcc7942_1699at 1765.610 kb on - strand, within Synpcc7942_1699at 1765.620 kb on - strand, within Synpcc7942_1699at 1765.628 kb on - strand, within Synpcc7942_1699at 1765.651 kb on - strand, within Synpcc7942_1699at 1765.666 kb on + strand, within Synpcc7942_1699at 1765.671 kb on + strand, within Synpcc7942_1699at 1765.704 kb on + strand, within Synpcc7942_1699at 1765.731 kb on - strand, within Synpcc7942_1699at 1765.731 kb on - strand, within Synpcc7942_1699at 1765.733 kb on - strand, within Synpcc7942_1699at 1765.735 kb on - strand, within Synpcc7942_1699at 1765.738 kb on - strandat 1765.745 kb on - strand, within Synpcc7942_1699at 1765.773 kb on + strand, within Synpcc7942_1699at 1765.781 kb on - strand, within Synpcc7942_1699at 1765.781 kb on - strand, within Synpcc7942_1699at 1765.785 kb on + strand, within Synpcc7942_1699at 1765.785 kb on + strand, within Synpcc7942_1699at 1765.793 kb on - strand, within Synpcc7942_1699at 1765.793 kb on - strand, within Synpcc7942_1699at 1765.807 kb on + strand, within Synpcc7942_1699at 1765.807 kb on + strand, within Synpcc7942_1699at 1765.812 kb on + strand, within Synpcc7942_1699at 1765.848 kb on + strand, within Synpcc7942_1699at 1765.853 kb on + strand, within Synpcc7942_1699at 1765.884 kb on - strand, within Synpcc7942_1699at 1765.886 kb on + strand, within Synpcc7942_1699at 1765.895 kb on + strand, within Synpcc7942_1699at 1765.895 kb on + strand, within Synpcc7942_1699at 1765.895 kb on + strand, within Synpcc7942_1699at 1765.900 kb on + strand, within Synpcc7942_1699at 1765.903 kb on - strand, within Synpcc7942_1699at 1765.903 kb on - strand, within Synpcc7942_1699at 1765.903 kb on - strand, within Synpcc7942_1699at 1765.908 kb on - strand, within Synpcc7942_1699at 1765.908 kb on - strand, within Synpcc7942_1699at 1765.910 kb on + strand, within Synpcc7942_1699at 1765.913 kb on - strand, within Synpcc7942_1699at 1765.925 kb on + strand, within Synpcc7942_1699at 1765.975 kb on - strand, within Synpcc7942_1699at 1765.975 kb on - strand, within Synpcc7942_1699at 1765.980 kb on + strand, within Synpcc7942_1699at 1765.986 kb on + strand, within Synpcc7942_1699at 1765.986 kb on + strand, within Synpcc7942_1699at 1765.986 kb on + strand, within Synpcc7942_1699at 1766.049 kb on - strand, within Synpcc7942_1699at 1766.055 kb on - strand, within Synpcc7942_1699at 1766.056 kb on - strand, within Synpcc7942_1699at 1766.083 kb on + strand, within Synpcc7942_1699at 1766.083 kb on + strand, within Synpcc7942_1699at 1766.091 kb on - strand, within Synpcc7942_1699at 1766.107 kb on + strand, within Synpcc7942_1699at 1766.115 kb on - strand, within Synpcc7942_1699at 1766.197 kb on - strand, within Synpcc7942_1699at 1766.204 kb on + strand, within Synpcc7942_1699at 1766.221 kb on + strand, within Synpcc7942_1699at 1766.221 kb on + strand, within Synpcc7942_1699at 1766.221 kb on + strand, within Synpcc7942_1699at 1766.221 kb on + strand, within Synpcc7942_1699at 1766.229 kb on - strand, within Synpcc7942_1699at 1766.259 kb on - strand, within Synpcc7942_1699at 1766.263 kb on - strand, within Synpcc7942_1699at 1766.271 kb on - strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.274 kb on + strand, within Synpcc7942_1699at 1766.282 kb on - strand, within Synpcc7942_1699at 1766.282 kb on - strand, within Synpcc7942_1699at 1766.287 kb on + strand, within Synpcc7942_1699at 1766.291 kb on - strand, within Synpcc7942_1699at 1766.295 kb on - strand, within Synpcc7942_1699at 1766.302 kb on + strand, within Synpcc7942_1699at 1766.329 kb on + strand, within Synpcc7942_1699at 1766.337 kb on - strand, within Synpcc7942_1699at 1766.341 kb on + strand, within Synpcc7942_1699at 1766.349 kb on - strand, within Synpcc7942_1699at 1766.349 kb on - strand, within Synpcc7942_1699at 1766.390 kb on + strand, within Synpcc7942_1699at 1766.398 kb on - strand, within Synpcc7942_1699at 1766.398 kb on - strand, within Synpcc7942_1699at 1766.399 kb on - strand, within Synpcc7942_1699at 1766.404 kb on + strand, within Synpcc7942_1699at 1766.407 kb on - strand, within Synpcc7942_1699at 1766.409 kb on + strand, within Synpcc7942_1699at 1766.426 kb on + strand, within Synpcc7942_1699at 1766.434 kb on - strand, within Synpcc7942_1699at 1766.446 kb on + strand, within Synpcc7942_1699at 1766.446 kb on + strand, within Synpcc7942_1699at 1766.454 kb on - strand, within Synpcc7942_1699at 1766.454 kb on - strand, within Synpcc7942_1699at 1766.469 kb on + strand, within Synpcc7942_1699at 1766.472 kb on - strand, within Synpcc7942_1699at 1766.499 kb on - strand, within Synpcc7942_1699at 1766.510 kb on - strand, within Synpcc7942_1699at 1766.567 kb on - strand, within Synpcc7942_1699at 1766.573 kb on + strand, within Synpcc7942_1699at 1766.573 kb on + strand, within Synpcc7942_1699at 1766.574 kb on + strand, within Synpcc7942_1699at 1766.574 kb on + strand, within Synpcc7942_1699at 1766.581 kb on - strand, within Synpcc7942_1699at 1766.602 kb on + strand, within Synpcc7942_1699at 1766.610 kb on - strand, within Synpcc7942_1699at 1766.618 kb on - strand, within Synpcc7942_1699at 1766.618 kb on - strand, within Synpcc7942_1699at 1766.623 kb on + strand, within Synpcc7942_1699at 1766.623 kb on + strand, within Synpcc7942_1699at 1766.651 kb on + strand, within Synpcc7942_1699at 1766.653 kb on + strand, within Synpcc7942_1699at 1766.666 kb on + strand, within Synpcc7942_1699at 1766.666 kb on + strand, within Synpcc7942_1699at 1766.704 kb on + strand, within Synpcc7942_1699at 1766.726 kb on + strandat 1766.769 kb on - strandat 1766.774 kb on - strandat 1766.774 kb on - strandat 1766.804 kb on + strandat 1766.844 kb on - strandat 1766.884 kb on + strandat 1766.887 kb on - strandat 1766.887 kb on - strandat 1766.892 kb on - strandat 1766.903 kb on + strandat 1766.903 kb on + strandat 1766.903 kb on + strandat 1766.903 kb on + strandat 1766.903 kb on + strandat 1766.911 kb on - strandat 1766.911 kb on - strandat 1766.911 kb on - strandat 1766.911 kb on - strandat 1766.911 kb on - strandat 1766.911 kb on - strandat 1766.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,764,473 - +1.3
1,764,497 - +3.1
1,764,511 - -0.6
1,764,525 - +1.0
1,764,536 + -0.7
1,764,544 - +0.1
1,764,577 + -0.2
1,764,609 + +0.4
1,764,623 - +1.2
1,764,642 - Synpcc7942_1697 0.11 +0.5
1,764,657 - Synpcc7942_1697 0.16 +0.7
1,764,661 + Synpcc7942_1697 0.18 +1.3
1,764,667 - Synpcc7942_1697 0.20 +0.9
1,764,667 - Synpcc7942_1697 0.20 -0.2
1,764,705 + Synpcc7942_1697 0.33 -2.0
1,764,719 - Synpcc7942_1697 0.38 +1.1
1,764,729 + Synpcc7942_1697 0.42 -1.4
1,764,729 + Synpcc7942_1697 0.42 +0.1
1,764,737 - Synpcc7942_1697 0.45 -2.6
1,764,737 - Synpcc7942_1697 0.45 +1.3
1,764,737 - Synpcc7942_1697 0.45 -0.6
1,764,737 - Synpcc7942_1697 0.45 +1.7
1,764,737 - Synpcc7942_1697 0.45 +1.5
1,764,763 + Synpcc7942_1697 0.54 -0.8
1,764,773 + Synpcc7942_1697 0.57 -3.3
1,764,781 - Synpcc7942_1697 0.60 -3.0
1,764,781 - Synpcc7942_1697 0.60 +1.1
1,764,781 - Synpcc7942_1697 0.60 +0.4
1,764,797 - Synpcc7942_1697 0.66 -2.5
1,764,821 + Synpcc7942_1697 0.74 +0.8
1,764,821 + Synpcc7942_1697 0.74 -2.3
1,764,829 + Synpcc7942_1697 0.77 -0.3
1,764,829 + Synpcc7942_1697 0.77 +1.2
1,764,829 + Synpcc7942_1697 0.77 -2.3
1,764,837 - Synpcc7942_1697 0.80 -0.2
1,764,837 - Synpcc7942_1697 0.80 +0.1
1,764,867 - -0.4
1,764,872 - -0.1
1,764,890 - -0.6
1,765,159 + Synpcc7942_1698 0.21 -0.3
1,765,197 + Synpcc7942_1698 0.32 -1.6
1,765,205 - Synpcc7942_1698 0.35 +1.1
1,765,258 - Synpcc7942_1698 0.50 -3.2
1,765,275 - Synpcc7942_1698 0.55 -1.6
1,765,297 + Synpcc7942_1698 0.61 +0.3
1,765,305 - Synpcc7942_1698 0.64 -3.1
1,765,305 - Synpcc7942_1698 0.64 +0.6
1,765,324 - Synpcc7942_1698 0.69 -3.3
1,765,332 - Synpcc7942_1698 0.72 -0.2
1,765,344 + Synpcc7942_1698 0.75 +1.4
1,765,344 - Synpcc7942_1698 0.75 +0.2
1,765,354 - Synpcc7942_1698 0.78 +0.8
1,765,364 - Synpcc7942_1698 0.81 +0.0
1,765,374 - Synpcc7942_1698 0.84 -1.5
1,765,386 - -1.8
1,765,386 - Synpcc7942_1698 0.87 +0.0
1,765,398 - +0.5
1,765,421 + +0.9
1,765,424 - +2.5
1,765,439 + +1.0
1,765,439 - +0.8
1,765,439 - +1.7
1,765,491 - +0.6
1,765,544 + -0.5
1,765,556 - -2.5
1,765,592 + -0.4
1,765,605 - Synpcc7942_1699 0.10 +1.3
1,765,605 - Synpcc7942_1699 0.10 -3.0
1,765,610 - Synpcc7942_1699 0.11 -3.3
1,765,620 - Synpcc7942_1699 0.11 -2.1
1,765,628 - Synpcc7942_1699 0.12 +1.2
1,765,651 - Synpcc7942_1699 0.13 -0.9
1,765,666 + Synpcc7942_1699 0.15 +1.0
1,765,671 + Synpcc7942_1699 0.15 -1.0
1,765,704 + Synpcc7942_1699 0.17 -3.1
1,765,731 - Synpcc7942_1699 0.19 -0.7
1,765,731 - Synpcc7942_1699 0.19 +1.1
1,765,733 - Synpcc7942_1699 0.19 -2.4
1,765,735 - Synpcc7942_1699 0.20 -0.1
1,765,738 - +0.8
1,765,745 - Synpcc7942_1699 0.20 -2.3
1,765,773 + Synpcc7942_1699 0.22 -1.1
1,765,781 - Synpcc7942_1699 0.23 -1.4
1,765,781 - Synpcc7942_1699 0.23 +0.2
1,765,785 + Synpcc7942_1699 0.23 -0.4
1,765,785 + Synpcc7942_1699 0.23 -0.2
1,765,793 - Synpcc7942_1699 0.24 -1.8
1,765,793 - Synpcc7942_1699 0.24 -0.7
1,765,807 + Synpcc7942_1699 0.25 -3.1
1,765,807 + Synpcc7942_1699 0.25 +1.6
1,765,812 + Synpcc7942_1699 0.25 +0.2
1,765,848 + Synpcc7942_1699 0.28 +0.1
1,765,853 + Synpcc7942_1699 0.28 -0.4
1,765,884 - Synpcc7942_1699 0.30 +1.1
1,765,886 + Synpcc7942_1699 0.30 -1.5
1,765,895 + Synpcc7942_1699 0.31 -3.6
1,765,895 + Synpcc7942_1699 0.31 -0.9
1,765,895 + Synpcc7942_1699 0.31 -0.3
1,765,900 + Synpcc7942_1699 0.31 +0.1
1,765,903 - Synpcc7942_1699 0.32 +0.4
1,765,903 - Synpcc7942_1699 0.32 -2.4
1,765,903 - Synpcc7942_1699 0.32 +0.3
1,765,908 - Synpcc7942_1699 0.32 -0.6
1,765,908 - Synpcc7942_1699 0.32 -1.0
1,765,910 + Synpcc7942_1699 0.32 +0.0
1,765,913 - Synpcc7942_1699 0.32 +0.3
1,765,925 + Synpcc7942_1699 0.33 +0.3
1,765,975 - Synpcc7942_1699 0.37 +0.2
1,765,975 - Synpcc7942_1699 0.37 -0.9
1,765,980 + Synpcc7942_1699 0.37 +0.2
1,765,986 + Synpcc7942_1699 0.38 +0.4
1,765,986 + Synpcc7942_1699 0.38 -2.7
1,765,986 + Synpcc7942_1699 0.38 -0.2
1,766,049 - Synpcc7942_1699 0.42 -0.0
1,766,055 - Synpcc7942_1699 0.43 +0.5
1,766,056 - Synpcc7942_1699 0.43 -2.0
1,766,083 + Synpcc7942_1699 0.45 -0.8
1,766,083 + Synpcc7942_1699 0.45 -1.1
1,766,091 - Synpcc7942_1699 0.45 -2.4
1,766,107 + Synpcc7942_1699 0.46 +0.5
1,766,115 - Synpcc7942_1699 0.47 +0.8
1,766,197 - Synpcc7942_1699 0.53 +0.2
1,766,204 + Synpcc7942_1699 0.53 -0.9
1,766,221 + Synpcc7942_1699 0.54 -0.6
1,766,221 + Synpcc7942_1699 0.54 -0.6
1,766,221 + Synpcc7942_1699 0.54 -0.7
1,766,221 + Synpcc7942_1699 0.54 -2.3
1,766,229 - Synpcc7942_1699 0.55 -1.6
1,766,259 - Synpcc7942_1699 0.57 -2.5
1,766,263 - Synpcc7942_1699 0.58 +1.0
1,766,271 - Synpcc7942_1699 0.58 -1.6
1,766,274 + Synpcc7942_1699 0.58 -3.9
1,766,274 + Synpcc7942_1699 0.58 -2.2
1,766,274 + Synpcc7942_1699 0.58 +1.6
1,766,274 + Synpcc7942_1699 0.58 -2.0
1,766,274 + Synpcc7942_1699 0.58 -0.3
1,766,274 + Synpcc7942_1699 0.58 +0.2
1,766,282 - Synpcc7942_1699 0.59 -0.5
1,766,282 - Synpcc7942_1699 0.59 +0.3
1,766,287 + Synpcc7942_1699 0.59 -0.3
1,766,291 - Synpcc7942_1699 0.60 -0.2
1,766,295 - Synpcc7942_1699 0.60 -2.1
1,766,302 + Synpcc7942_1699 0.60 -0.8
1,766,329 + Synpcc7942_1699 0.62 -1.4
1,766,337 - Synpcc7942_1699 0.63 -0.5
1,766,341 + Synpcc7942_1699 0.63 +0.5
1,766,349 - Synpcc7942_1699 0.64 -0.1
1,766,349 - Synpcc7942_1699 0.64 -3.8
1,766,390 + Synpcc7942_1699 0.67 +0.3
1,766,398 - Synpcc7942_1699 0.67 -0.9
1,766,398 - Synpcc7942_1699 0.67 +0.6
1,766,399 - Synpcc7942_1699 0.67 -0.9
1,766,404 + Synpcc7942_1699 0.68 +0.3
1,766,407 - Synpcc7942_1699 0.68 -1.0
1,766,409 + Synpcc7942_1699 0.68 +0.0
1,766,426 + Synpcc7942_1699 0.69 +0.7
1,766,434 - Synpcc7942_1699 0.70 -0.3
1,766,446 + Synpcc7942_1699 0.71 -2.3
1,766,446 + Synpcc7942_1699 0.71 +0.7
1,766,454 - Synpcc7942_1699 0.71 +0.1
1,766,454 - Synpcc7942_1699 0.71 -4.8
1,766,469 + Synpcc7942_1699 0.72 +1.0
1,766,472 - Synpcc7942_1699 0.73 -3.3
1,766,499 - Synpcc7942_1699 0.75 -0.2
1,766,510 - Synpcc7942_1699 0.75 +0.2
1,766,567 - Synpcc7942_1699 0.79 +0.1
1,766,573 + Synpcc7942_1699 0.80 +0.2
1,766,573 + Synpcc7942_1699 0.80 -1.8
1,766,574 + Synpcc7942_1699 0.80 +0.8
1,766,574 + Synpcc7942_1699 0.80 -3.4
1,766,581 - Synpcc7942_1699 0.80 -0.8
1,766,602 + Synpcc7942_1699 0.82 -0.1
1,766,610 - Synpcc7942_1699 0.83 -1.5
1,766,618 - Synpcc7942_1699 0.83 -0.6
1,766,618 - Synpcc7942_1699 0.83 -5.4
1,766,623 + Synpcc7942_1699 0.83 -2.4
1,766,623 + Synpcc7942_1699 0.83 -0.2
1,766,651 + Synpcc7942_1699 0.85 -0.3
1,766,653 + Synpcc7942_1699 0.86 +1.1
1,766,666 + Synpcc7942_1699 0.87 +0.4
1,766,666 + Synpcc7942_1699 0.87 -0.5
1,766,704 + Synpcc7942_1699 0.89 -0.5
1,766,726 + -0.5
1,766,769 - -3.1
1,766,774 - -2.8
1,766,774 - +0.6
1,766,804 + -0.4
1,766,844 - +0.4
1,766,884 + +0.8
1,766,887 - -4.0
1,766,887 - -2.2
1,766,892 - -1.9
1,766,903 + +0.8
1,766,903 + -0.6
1,766,903 + -4.6
1,766,903 + -0.8
1,766,903 + -0.2
1,766,911 - +0.9
1,766,911 - +1.3
1,766,911 - +1.7
1,766,911 - +1.1
1,766,911 - -0.0
1,766,911 - -0.5
1,766,947 - -1.0

Or see this region's nucleotide sequence