Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1676

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1673 and Synpcc7942_1674 are separated by 0 nucleotidesSynpcc7942_1674 and Synpcc7942_1675 are separated by 114 nucleotidesSynpcc7942_1675 and Synpcc7942_1676 are separated by 49 nucleotidesSynpcc7942_1676 and Synpcc7942_1677 are separated by 30 nucleotides Synpcc7942_1673: Synpcc7942_1673 - hypothetical protein, at 1,743,189 to 1,743,854 _1673 Synpcc7942_1674: Synpcc7942_1674 - hypothetical protein, at 1,743,855 to 1,744,166 _1674 Synpcc7942_1675: Synpcc7942_1675 - hypothetical protein, at 1,744,281 to 1,744,766 _1675 Synpcc7942_1676: Synpcc7942_1676 - hypothetical protein, at 1,744,816 to 1,745,469 _1676 Synpcc7942_1677: Synpcc7942_1677 - hypothetical protein, at 1,745,500 to 1,746,597 _1677 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1743.896 kb on + strand, within Synpcc7942_1674at 1743.896 kb on + strand, within Synpcc7942_1674at 1743.904 kb on - strand, within Synpcc7942_1674at 1743.923 kb on + strand, within Synpcc7942_1674at 1743.931 kb on - strand, within Synpcc7942_1674at 1743.932 kb on - strand, within Synpcc7942_1674at 1744.060 kb on + strand, within Synpcc7942_1674at 1744.179 kb on - strandat 1744.179 kb on - strandat 1744.236 kb on + strandat 1744.244 kb on - strandat 1744.273 kb on + strandat 1744.273 kb on + strandat 1744.286 kb on + strandat 1744.303 kb on + strandat 1744.304 kb on + strandat 1744.323 kb on + strandat 1744.329 kb on + strandat 1744.375 kb on - strand, within Synpcc7942_1675at 1744.389 kb on - strand, within Synpcc7942_1675at 1744.401 kb on + strand, within Synpcc7942_1675at 1744.419 kb on + strand, within Synpcc7942_1675at 1744.424 kb on + strand, within Synpcc7942_1675at 1744.427 kb on - strand, within Synpcc7942_1675at 1744.433 kb on + strand, within Synpcc7942_1675at 1744.438 kb on + strand, within Synpcc7942_1675at 1744.438 kb on - strand, within Synpcc7942_1675at 1744.446 kb on - strand, within Synpcc7942_1675at 1744.446 kb on - strand, within Synpcc7942_1675at 1744.462 kb on + strand, within Synpcc7942_1675at 1744.462 kb on + strand, within Synpcc7942_1675at 1744.467 kb on + strand, within Synpcc7942_1675at 1744.470 kb on - strand, within Synpcc7942_1675at 1744.472 kb on + strand, within Synpcc7942_1675at 1744.480 kb on - strand, within Synpcc7942_1675at 1744.480 kb on - strand, within Synpcc7942_1675at 1744.483 kb on - strand, within Synpcc7942_1675at 1744.499 kb on - strand, within Synpcc7942_1675at 1744.510 kb on + strand, within Synpcc7942_1675at 1744.543 kb on + strand, within Synpcc7942_1675at 1744.546 kb on - strand, within Synpcc7942_1675at 1744.551 kb on - strand, within Synpcc7942_1675at 1744.562 kb on + strand, within Synpcc7942_1675at 1744.573 kb on - strand, within Synpcc7942_1675at 1744.587 kb on + strand, within Synpcc7942_1675at 1744.588 kb on - strand, within Synpcc7942_1675at 1744.588 kb on - strand, within Synpcc7942_1675at 1744.588 kb on - strand, within Synpcc7942_1675at 1744.613 kb on - strand, within Synpcc7942_1675at 1744.681 kb on + strand, within Synpcc7942_1675at 1744.689 kb on - strand, within Synpcc7942_1675at 1744.722 kb on + strandat 1744.741 kb on + strandat 1744.749 kb on - strandat 1744.766 kb on + strandat 1744.776 kb on - strandat 1744.776 kb on - strandat 1744.776 kb on - strandat 1744.791 kb on - strandat 1744.830 kb on + strandat 1744.830 kb on + strandat 1744.838 kb on - strandat 1744.846 kb on + strandat 1744.854 kb on - strandat 1744.863 kb on - strandat 1744.863 kb on - strandat 1744.891 kb on + strand, within Synpcc7942_1676at 1744.891 kb on + strand, within Synpcc7942_1676at 1744.900 kb on + strand, within Synpcc7942_1676at 1744.908 kb on - strand, within Synpcc7942_1676at 1744.908 kb on - strandat 1744.908 kb on - strand, within Synpcc7942_1676at 1744.908 kb on - strand, within Synpcc7942_1676at 1744.962 kb on - strand, within Synpcc7942_1676at 1744.967 kb on - strand, within Synpcc7942_1676at 1744.971 kb on + strand, within Synpcc7942_1676at 1744.974 kb on - strand, within Synpcc7942_1676at 1744.986 kb on + strand, within Synpcc7942_1676at 1744.994 kb on - strand, within Synpcc7942_1676at 1744.994 kb on - strand, within Synpcc7942_1676at 1745.004 kb on - strand, within Synpcc7942_1676at 1745.012 kb on - strand, within Synpcc7942_1676at 1745.014 kb on - strand, within Synpcc7942_1676at 1745.049 kb on - strand, within Synpcc7942_1676at 1745.086 kb on - strand, within Synpcc7942_1676at 1745.086 kb on - strand, within Synpcc7942_1676at 1745.086 kb on - strand, within Synpcc7942_1676at 1745.086 kb on - strand, within Synpcc7942_1676at 1745.115 kb on + strand, within Synpcc7942_1676at 1745.126 kb on + strandat 1745.134 kb on - strandat 1745.134 kb on - strand, within Synpcc7942_1676at 1745.134 kb on - strand, within Synpcc7942_1676at 1745.139 kb on + strand, within Synpcc7942_1676at 1745.165 kb on + strand, within Synpcc7942_1676at 1745.168 kb on - strand, within Synpcc7942_1676at 1745.174 kb on + strand, within Synpcc7942_1676at 1745.206 kb on + strand, within Synpcc7942_1676at 1745.215 kb on + strand, within Synpcc7942_1676at 1745.241 kb on - strand, within Synpcc7942_1676at 1745.251 kb on + strand, within Synpcc7942_1676at 1745.251 kb on + strand, within Synpcc7942_1676at 1745.266 kb on - strand, within Synpcc7942_1676at 1745.271 kb on - strand, within Synpcc7942_1676at 1745.311 kb on - strand, within Synpcc7942_1676at 1745.324 kb on - strandat 1745.345 kb on - strand, within Synpcc7942_1676at 1745.363 kb on + strand, within Synpcc7942_1676at 1745.378 kb on + strand, within Synpcc7942_1676at 1745.398 kb on - strand, within Synpcc7942_1676at 1745.405 kb on + strandat 1745.413 kb on - strandat 1745.413 kb on - strandat 1745.458 kb on - strandat 1745.476 kb on + strandat 1745.476 kb on + strandat 1745.476 kb on + strandat 1745.484 kb on - strandat 1745.511 kb on - strandat 1745.521 kb on - strandat 1745.521 kb on - strandat 1745.526 kb on - strandat 1745.534 kb on + strandat 1745.544 kb on - strandat 1745.544 kb on - strandat 1745.584 kb on - strandat 1745.586 kb on - strandat 1745.619 kb on - strand, within Synpcc7942_1677at 1745.636 kb on + strand, within Synpcc7942_1677at 1745.642 kb on + strand, within Synpcc7942_1677at 1745.673 kb on + strand, within Synpcc7942_1677at 1745.674 kb on - strand, within Synpcc7942_1677at 1745.684 kb on + strand, within Synpcc7942_1677at 1745.688 kb on - strand, within Synpcc7942_1677at 1745.692 kb on - strand, within Synpcc7942_1677at 1745.709 kb on + strand, within Synpcc7942_1677at 1745.720 kb on + strand, within Synpcc7942_1677at 1745.733 kb on - strand, within Synpcc7942_1677at 1745.759 kb on - strand, within Synpcc7942_1677at 1745.833 kb on + strand, within Synpcc7942_1677at 1745.834 kb on + strand, within Synpcc7942_1677at 1745.855 kb on - strand, within Synpcc7942_1677at 1745.889 kb on + strand, within Synpcc7942_1677at 1745.892 kb on - strand, within Synpcc7942_1677at 1745.897 kb on - strand, within Synpcc7942_1677at 1745.897 kb on - strand, within Synpcc7942_1677at 1745.940 kb on - strand, within Synpcc7942_1677at 1745.974 kb on + strand, within Synpcc7942_1677at 1745.982 kb on - strandat 1746.079 kb on - strand, within Synpcc7942_1677at 1746.104 kb on + strand, within Synpcc7942_1677at 1746.118 kb on + strand, within Synpcc7942_1677at 1746.136 kb on + strand, within Synpcc7942_1677at 1746.140 kb on - strand, within Synpcc7942_1677at 1746.169 kb on + strand, within Synpcc7942_1677at 1746.191 kb on + strand, within Synpcc7942_1677at 1746.208 kb on - strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.210 kb on + strand, within Synpcc7942_1677at 1746.213 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.218 kb on - strand, within Synpcc7942_1677at 1746.228 kb on + strand, within Synpcc7942_1677at 1746.228 kb on - strand, within Synpcc7942_1677at 1746.235 kb on + strand, within Synpcc7942_1677at 1746.268 kb on - strand, within Synpcc7942_1677at 1746.270 kb on + strand, within Synpcc7942_1677at 1746.273 kb on - strand, within Synpcc7942_1677at 1746.306 kb on + strand, within Synpcc7942_1677at 1746.306 kb on + strand, within Synpcc7942_1677at 1746.323 kb on - strand, within Synpcc7942_1677at 1746.324 kb on + strand, within Synpcc7942_1677at 1746.332 kb on - strand, within Synpcc7942_1677at 1746.333 kb on - strand, within Synpcc7942_1677at 1746.337 kb on - strand, within Synpcc7942_1677at 1746.381 kb on + strand, within Synpcc7942_1677at 1746.389 kb on - strand, within Synpcc7942_1677at 1746.429 kb on + strand, within Synpcc7942_1677at 1746.451 kb on + strand, within Synpcc7942_1677at 1746.451 kb on + strand, within Synpcc7942_1677at 1746.451 kb on + strand, within Synpcc7942_1677at 1746.451 kb on + strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677at 1746.459 kb on - strand, within Synpcc7942_1677

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,743,896 + Synpcc7942_1674 0.13 +2.1
1,743,896 + Synpcc7942_1674 0.13 +2.1
1,743,904 - Synpcc7942_1674 0.16 +3.7
1,743,923 + Synpcc7942_1674 0.22 +2.5
1,743,931 - Synpcc7942_1674 0.24 +2.7
1,743,932 - Synpcc7942_1674 0.25 +3.2
1,744,060 + Synpcc7942_1674 0.66 +1.2
1,744,179 - +1.6
1,744,179 - +3.1
1,744,236 + -1.6
1,744,244 - +0.7
1,744,273 + -0.7
1,744,273 + +1.7
1,744,286 + -2.9
1,744,303 + -0.7
1,744,304 + -1.9
1,744,323 + -0.3
1,744,329 + -1.6
1,744,375 - Synpcc7942_1675 0.19 -0.6
1,744,389 - Synpcc7942_1675 0.22 -0.7
1,744,401 + Synpcc7942_1675 0.25 -1.7
1,744,419 + Synpcc7942_1675 0.28 -1.0
1,744,424 + Synpcc7942_1675 0.29 -0.8
1,744,427 - Synpcc7942_1675 0.30 +0.7
1,744,433 + Synpcc7942_1675 0.31 +1.4
1,744,438 + Synpcc7942_1675 0.32 +0.3
1,744,438 - Synpcc7942_1675 0.32 -2.4
1,744,446 - Synpcc7942_1675 0.34 -1.9
1,744,446 - Synpcc7942_1675 0.34 -2.0
1,744,462 + Synpcc7942_1675 0.37 -0.8
1,744,462 + Synpcc7942_1675 0.37 -1.1
1,744,467 + Synpcc7942_1675 0.38 -2.8
1,744,470 - Synpcc7942_1675 0.39 +0.3
1,744,472 + Synpcc7942_1675 0.39 +0.8
1,744,480 - Synpcc7942_1675 0.41 -1.6
1,744,480 - Synpcc7942_1675 0.41 -3.0
1,744,483 - Synpcc7942_1675 0.42 +0.3
1,744,499 - Synpcc7942_1675 0.45 -0.1
1,744,510 + Synpcc7942_1675 0.47 -1.0
1,744,543 + Synpcc7942_1675 0.54 -0.5
1,744,546 - Synpcc7942_1675 0.55 -1.9
1,744,551 - Synpcc7942_1675 0.56 +0.4
1,744,562 + Synpcc7942_1675 0.58 -0.3
1,744,573 - Synpcc7942_1675 0.60 +0.0
1,744,587 + Synpcc7942_1675 0.63 +0.9
1,744,588 - Synpcc7942_1675 0.63 -1.2
1,744,588 - Synpcc7942_1675 0.63 -0.7
1,744,588 - Synpcc7942_1675 0.63 +0.9
1,744,613 - Synpcc7942_1675 0.68 -1.8
1,744,681 + Synpcc7942_1675 0.82 +2.2
1,744,689 - Synpcc7942_1675 0.84 -4.3
1,744,722 + +0.6
1,744,741 + -4.0
1,744,749 - -0.7
1,744,766 + -1.0
1,744,776 - +0.1
1,744,776 - -2.0
1,744,776 - +1.3
1,744,791 - +1.2
1,744,830 + -0.7
1,744,830 + -2.3
1,744,838 - -0.7
1,744,846 + +0.2
1,744,854 - -3.0
1,744,863 - -1.4
1,744,863 - -1.4
1,744,891 + Synpcc7942_1676 0.11 -0.1
1,744,891 + Synpcc7942_1676 0.11 -2.1
1,744,900 + Synpcc7942_1676 0.13 +0.1
1,744,908 - Synpcc7942_1676 0.14 -1.4
1,744,908 - +1.4
1,744,908 - Synpcc7942_1676 0.14 -1.8
1,744,908 - Synpcc7942_1676 0.14 -2.4
1,744,962 - Synpcc7942_1676 0.22 -0.0
1,744,967 - Synpcc7942_1676 0.23 -2.1
1,744,971 + Synpcc7942_1676 0.24 -0.9
1,744,974 - Synpcc7942_1676 0.24 -2.3
1,744,986 + Synpcc7942_1676 0.26 -2.1
1,744,994 - Synpcc7942_1676 0.27 -4.4
1,744,994 - Synpcc7942_1676 0.27 -3.0
1,745,004 - Synpcc7942_1676 0.29 -2.6
1,745,012 - Synpcc7942_1676 0.30 -2.4
1,745,014 - Synpcc7942_1676 0.30 -1.8
1,745,049 - Synpcc7942_1676 0.36 -0.1
1,745,086 - Synpcc7942_1676 0.41 -0.8
1,745,086 - Synpcc7942_1676 0.41 +0.1
1,745,086 - Synpcc7942_1676 0.41 -0.8
1,745,086 - Synpcc7942_1676 0.41 -1.0
1,745,115 + Synpcc7942_1676 0.46 -0.8
1,745,126 + -1.1
1,745,134 - -1.7
1,745,134 - Synpcc7942_1676 0.49 -1.8
1,745,134 - Synpcc7942_1676 0.49 -0.3
1,745,139 + Synpcc7942_1676 0.49 -1.2
1,745,165 + Synpcc7942_1676 0.53 -1.2
1,745,168 - Synpcc7942_1676 0.54 -1.8
1,745,174 + Synpcc7942_1676 0.55 -1.8
1,745,206 + Synpcc7942_1676 0.60 -2.1
1,745,215 + Synpcc7942_1676 0.61 -1.3
1,745,241 - Synpcc7942_1676 0.65 -2.3
1,745,251 + Synpcc7942_1676 0.67 -3.1
1,745,251 + Synpcc7942_1676 0.67 -2.0
1,745,266 - Synpcc7942_1676 0.69 -0.0
1,745,271 - Synpcc7942_1676 0.70 -1.7
1,745,311 - Synpcc7942_1676 0.76 -0.8
1,745,324 - -0.1
1,745,345 - Synpcc7942_1676 0.81 -1.3
1,745,363 + Synpcc7942_1676 0.84 -2.0
1,745,378 + Synpcc7942_1676 0.86 -3.0
1,745,398 - Synpcc7942_1676 0.89 -3.5
1,745,405 + -3.9
1,745,413 - -3.2
1,745,413 - -1.7
1,745,458 - -2.5
1,745,476 + -3.7
1,745,476 + -1.3
1,745,476 + +2.1
1,745,484 - -0.7
1,745,511 - -3.0
1,745,521 - -0.5
1,745,521 - +1.5
1,745,526 - +0.2
1,745,534 + -3.3
1,745,544 - +0.7
1,745,544 - -1.5
1,745,584 - +0.4
1,745,586 - +1.2
1,745,619 - Synpcc7942_1677 0.11 -1.9
1,745,636 + Synpcc7942_1677 0.12 +0.3
1,745,642 + Synpcc7942_1677 0.13 -0.1
1,745,673 + Synpcc7942_1677 0.16 +0.9
1,745,674 - Synpcc7942_1677 0.16 +0.9
1,745,684 + Synpcc7942_1677 0.17 +1.8
1,745,688 - Synpcc7942_1677 0.17 +0.4
1,745,692 - Synpcc7942_1677 0.17 -2.4
1,745,709 + Synpcc7942_1677 0.19 -0.6
1,745,720 + Synpcc7942_1677 0.20 +2.0
1,745,733 - Synpcc7942_1677 0.21 -0.1
1,745,759 - Synpcc7942_1677 0.24 +0.2
1,745,833 + Synpcc7942_1677 0.30 +0.9
1,745,834 + Synpcc7942_1677 0.30 -1.4
1,745,855 - Synpcc7942_1677 0.32 -1.6
1,745,889 + Synpcc7942_1677 0.35 -1.5
1,745,892 - Synpcc7942_1677 0.36 +1.4
1,745,897 - Synpcc7942_1677 0.36 +0.1
1,745,897 - Synpcc7942_1677 0.36 -0.6
1,745,940 - Synpcc7942_1677 0.40 +0.9
1,745,974 + Synpcc7942_1677 0.43 +1.1
1,745,982 - +0.8
1,746,079 - Synpcc7942_1677 0.53 -0.1
1,746,104 + Synpcc7942_1677 0.55 +0.9
1,746,118 + Synpcc7942_1677 0.56 +0.9
1,746,136 + Synpcc7942_1677 0.58 -1.1
1,746,140 - Synpcc7942_1677 0.58 +2.0
1,746,169 + Synpcc7942_1677 0.61 +1.6
1,746,191 + Synpcc7942_1677 0.63 +1.0
1,746,208 - Synpcc7942_1677 0.64 -0.1
1,746,210 + Synpcc7942_1677 0.65 -0.4
1,746,210 + Synpcc7942_1677 0.65 -0.7
1,746,210 + Synpcc7942_1677 0.65 +2.2
1,746,210 + Synpcc7942_1677 0.65 -1.6
1,746,210 + Synpcc7942_1677 0.65 -1.0
1,746,210 + Synpcc7942_1677 0.65 -1.0
1,746,210 + Synpcc7942_1677 0.65 -4.0
1,746,213 - Synpcc7942_1677 0.65 -0.9
1,746,218 - Synpcc7942_1677 0.65 -2.0
1,746,218 - Synpcc7942_1677 0.65 -2.3
1,746,218 - Synpcc7942_1677 0.65 +2.3
1,746,218 - Synpcc7942_1677 0.65 +1.6
1,746,218 - Synpcc7942_1677 0.65 +1.7
1,746,218 - Synpcc7942_1677 0.65 +1.6
1,746,218 - Synpcc7942_1677 0.65 -3.1
1,746,218 - Synpcc7942_1677 0.65 +1.0
1,746,228 + Synpcc7942_1677 0.66 -3.9
1,746,228 - Synpcc7942_1677 0.66 +1.2
1,746,235 + Synpcc7942_1677 0.67 +1.4
1,746,268 - Synpcc7942_1677 0.70 -0.6
1,746,270 + Synpcc7942_1677 0.70 +0.9
1,746,273 - Synpcc7942_1677 0.70 -0.4
1,746,306 + Synpcc7942_1677 0.73 +1.8
1,746,306 + Synpcc7942_1677 0.73 -0.9
1,746,323 - Synpcc7942_1677 0.75 +1.7
1,746,324 + Synpcc7942_1677 0.75 +0.7
1,746,332 - Synpcc7942_1677 0.76 +1.6
1,746,333 - Synpcc7942_1677 0.76 +0.2
1,746,337 - Synpcc7942_1677 0.76 +1.4
1,746,381 + Synpcc7942_1677 0.80 +1.5
1,746,389 - Synpcc7942_1677 0.81 +1.5
1,746,429 + Synpcc7942_1677 0.85 +1.1
1,746,451 + Synpcc7942_1677 0.87 -2.0
1,746,451 + Synpcc7942_1677 0.87 +0.2
1,746,451 + Synpcc7942_1677 0.87 +0.9
1,746,451 + Synpcc7942_1677 0.87 -1.9
1,746,459 - Synpcc7942_1677 0.87 +1.6
1,746,459 - Synpcc7942_1677 0.87 +1.6
1,746,459 - Synpcc7942_1677 0.87 +1.9
1,746,459 - Synpcc7942_1677 0.87 -1.0
1,746,459 - Synpcc7942_1677 0.87 -1.1
1,746,459 - Synpcc7942_1677 0.87 -0.0
1,746,459 - Synpcc7942_1677 0.87 +1.2
1,746,459 - Synpcc7942_1677 0.87 +4.2
1,746,459 - Synpcc7942_1677 0.87 -0.1

Or see this region's nucleotide sequence