Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1497 and Synpcc7942_1498 are separated by 101 nucleotides Synpcc7942_1498 and petF are separated by 220 nucleotides petF and prmA are separated by 248 nucleotides
Synpcc7942_1497: Synpcc7942_1497 - hypothetical protein, at 1,547,545 to 1,548,105
_1497
Synpcc7942_1498: Synpcc7942_1498 - hypothetical protein, at 1,548,207 to 1,548,410
_1498
Synpcc7942_1499: petF - Ferredoxin (2Fe-2S), at 1,548,631 to 1,548,930
petF
Synpcc7942_1500: prmA - ribosomal protein L11 methyltransferase, at 1,549,179 to 1,550,078
prmA
Position (kb) 1548
1549 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1547.803 kb on + strand, within Synpcc7942_1497 at 1548.140 kb on + strand at 1548.186 kb on + strand at 1548.203 kb on + strand at 1548.250 kb on + strand at 1548.258 kb on + strand, within Synpcc7942_1498 at 1548.298 kb on + strand, within Synpcc7942_1498 at 1548.298 kb on + strand, within Synpcc7942_1498 at 1548.299 kb on - strand, within Synpcc7942_1498 at 1548.323 kb on - strand, within Synpcc7942_1498 at 1548.335 kb on + strand, within Synpcc7942_1498 at 1548.341 kb on + strand, within Synpcc7942_1498 at 1548.343 kb on - strand, within Synpcc7942_1498 at 1548.343 kb on - strand, within Synpcc7942_1498 at 1548.343 kb on - strand, within Synpcc7942_1498 at 1548.370 kb on - strand, within Synpcc7942_1498 at 1548.410 kb on + strand at 1548.410 kb on + strand at 1548.418 kb on - strand at 1548.434 kb on + strand at 1548.439 kb on + strand at 1548.442 kb on - strand at 1548.442 kb on - strand at 1548.447 kb on + strand at 1548.447 kb on - strand at 1548.452 kb on + strand at 1548.452 kb on + strand at 1548.460 kb on - strand at 1548.465 kb on - strand at 1548.468 kb on + strand at 1548.481 kb on - strand at 1548.491 kb on + strand at 1548.497 kb on - strand at 1548.499 kb on - strand at 1548.527 kb on + strand at 1548.527 kb on + strand at 1548.535 kb on - strand at 1548.535 kb on - strand at 1548.555 kb on - strand at 1548.622 kb on + strand at 1549.146 kb on + strand at 1549.154 kb on - strand at 1549.217 kb on + strand at 1549.257 kb on - strand at 1549.259 kb on + strand at 1549.259 kb on + strand at 1549.259 kb on - strand at 1549.279 kb on - strand, within prmA at 1549.287 kb on - strand, within prmA at 1549.352 kb on + strand, within prmA at 1549.352 kb on + strand, within prmA at 1549.426 kb on - strand, within prmA at 1549.439 kb on - strand, within prmA at 1549.446 kb on + strand, within prmA at 1549.446 kb on + strand, within prmA at 1549.454 kb on - strand, within prmA at 1549.456 kb on + strand, within prmA at 1549.464 kb on - strand, within prmA at 1549.464 kb on - strand, within prmA at 1549.464 kb on - strand, within prmA at 1549.505 kb on - strand, within prmA at 1549.510 kb on - strand, within prmA at 1549.537 kb on + strand, within prmA at 1549.542 kb on + strand, within prmA at 1549.542 kb on + strand, within prmA at 1549.544 kb on - strand, within prmA at 1549.545 kb on - strand, within prmA at 1549.550 kb on - strand, within prmA at 1549.562 kb on + strand, within prmA at 1549.570 kb on - strand, within prmA at 1549.589 kb on + strand, within prmA at 1549.609 kb on - strand, within prmA at 1549.648 kb on + strand, within prmA at 1549.651 kb on - strand, within prmA at 1549.656 kb on - strand, within prmA at 1549.656 kb on - strand, within prmA at 1549.702 kb on + strand, within prmA at 1549.733 kb on - strand, within prmA at 1549.737 kb on + strand, within prmA at 1549.772 kb on + strand, within prmA at 1549.772 kb on + strand, within prmA at 1549.772 kb on + strand, within prmA at 1549.780 kb on - strand, within prmA at 1549.780 kb on - strand, within prmA at 1549.781 kb on - strand, within prmA at 1549.815 kb on - strand, within prmA at 1549.815 kb on - strand, within prmA at 1549.815 kb on - strand, within prmA at 1549.837 kb on + strand at 1549.845 kb on + strand, within prmA at 1549.849 kb on - strand, within prmA at 1549.854 kb on - strand, within prmA at 1549.884 kb on - strand, within prmA at 1549.884 kb on - strand, within prmA at 1549.910 kb on + strand at 1549.915 kb on + strand, within prmA at 1549.918 kb on - strand, within prmA at 1549.923 kb on - strand, within prmA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,547,803 + Synpcc7942_1497 0.46 +4.5 1,548,140 + +1.4 1,548,186 + -2.0 1,548,203 + -1.2 1,548,250 + -1.2 1,548,258 + Synpcc7942_1498 0.25 +2.9 1,548,298 + Synpcc7942_1498 0.45 -0.3 1,548,298 + Synpcc7942_1498 0.45 -0.5 1,548,299 - Synpcc7942_1498 0.45 -0.3 1,548,323 - Synpcc7942_1498 0.57 -0.3 1,548,335 + Synpcc7942_1498 0.63 +2.7 1,548,341 + Synpcc7942_1498 0.66 -0.4 1,548,343 - Synpcc7942_1498 0.67 -1.0 1,548,343 - Synpcc7942_1498 0.67 +1.3 1,548,343 - Synpcc7942_1498 0.67 -0.2 1,548,370 - Synpcc7942_1498 0.80 +4.9 1,548,410 + +0.7 1,548,410 + +1.2 1,548,418 - -0.2 1,548,434 + +2.0 1,548,439 + +1.0 1,548,442 - +1.0 1,548,442 - +1.5 1,548,447 + +1.3 1,548,447 - -1.6 1,548,452 + -0.4 1,548,452 + +1.0 1,548,460 - +0.7 1,548,465 - -2.7 1,548,468 + +2.0 1,548,481 - -2.2 1,548,491 + -1.0 1,548,497 - -1.3 1,548,499 - -1.2 1,548,527 + +1.0 1,548,527 + +0.9 1,548,535 - +0.9 1,548,535 - +1.1 1,548,555 - -1.8 1,548,622 + +0.9 1,549,146 + -1.0 1,549,154 - -3.0 1,549,217 + +1.0 1,549,257 - +0.5 1,549,259 + -0.8 1,549,259 + +0.9 1,549,259 - -2.5 1,549,279 - prmA Synpcc7942_1500 0.11 +1.8 1,549,287 - prmA Synpcc7942_1500 0.12 +1.1 1,549,352 + prmA Synpcc7942_1500 0.19 -0.4 1,549,352 + prmA Synpcc7942_1500 0.19 +2.4 1,549,426 - prmA Synpcc7942_1500 0.27 +1.3 1,549,439 - prmA Synpcc7942_1500 0.29 +1.4 1,549,446 + prmA Synpcc7942_1500 0.30 +3.0 1,549,446 + prmA Synpcc7942_1500 0.30 +2.0 1,549,454 - prmA Synpcc7942_1500 0.31 +2.3 1,549,456 + prmA Synpcc7942_1500 0.31 -1.8 1,549,464 - prmA Synpcc7942_1500 0.32 -2.2 1,549,464 - prmA Synpcc7942_1500 0.32 -1.4 1,549,464 - prmA Synpcc7942_1500 0.32 -1.6 1,549,505 - prmA Synpcc7942_1500 0.36 +1.4 1,549,510 - prmA Synpcc7942_1500 0.37 +1.7 1,549,537 + prmA Synpcc7942_1500 0.40 +1.8 1,549,542 + prmA Synpcc7942_1500 0.40 +1.2 1,549,542 + prmA Synpcc7942_1500 0.40 -0.2 1,549,544 - prmA Synpcc7942_1500 0.41 +2.2 1,549,545 - prmA Synpcc7942_1500 0.41 +2.1 1,549,550 - prmA Synpcc7942_1500 0.41 +0.9 1,549,562 + prmA Synpcc7942_1500 0.43 -4.4 1,549,570 - prmA Synpcc7942_1500 0.43 +0.1 1,549,589 + prmA Synpcc7942_1500 0.46 +1.9 1,549,609 - prmA Synpcc7942_1500 0.48 +2.5 1,549,648 + prmA Synpcc7942_1500 0.52 +1.5 1,549,651 - prmA Synpcc7942_1500 0.52 +0.9 1,549,656 - prmA Synpcc7942_1500 0.53 +1.1 1,549,656 - prmA Synpcc7942_1500 0.53 -1.6 1,549,702 + prmA Synpcc7942_1500 0.58 +2.4 1,549,733 - prmA Synpcc7942_1500 0.62 -1.5 1,549,737 + prmA Synpcc7942_1500 0.62 +1.5 1,549,772 + prmA Synpcc7942_1500 0.66 +1.0 1,549,772 + prmA Synpcc7942_1500 0.66 -0.3 1,549,772 + prmA Synpcc7942_1500 0.66 +2.0 1,549,780 - prmA Synpcc7942_1500 0.67 +0.9 1,549,780 - prmA Synpcc7942_1500 0.67 +2.1 1,549,781 - prmA Synpcc7942_1500 0.67 +1.7 1,549,815 - prmA Synpcc7942_1500 0.71 +0.8 1,549,815 - prmA Synpcc7942_1500 0.71 -1.9 1,549,815 - prmA Synpcc7942_1500 0.71 +1.1 1,549,837 + +1.9 1,549,845 + prmA Synpcc7942_1500 0.74 -0.9 1,549,849 - prmA Synpcc7942_1500 0.74 +0.3 1,549,854 - prmA Synpcc7942_1500 0.75 +0.9 1,549,884 - prmA Synpcc7942_1500 0.78 -1.8 1,549,884 - prmA Synpcc7942_1500 0.78 -0.2 1,549,910 + +2.0 1,549,915 + prmA Synpcc7942_1500 0.82 +0.6 1,549,918 - prmA Synpcc7942_1500 0.82 +3.2 1,549,923 - prmA Synpcc7942_1500 0.83 +1.9
Or see this region's nucleotide sequence