Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panC and Synpcc7942_1152 are separated by 203 nucleotides Synpcc7942_1152 and digE are separated by 617 nucleotides
Synpcc7942_1151: panC - cytidylate kinase pantoate--beta-alanine ligase Cytidyltransferase-related, at 1,175,883 to 1,177,466
panC
Synpcc7942_1152: Synpcc7942_1152 - rare lipoprotein A, at 1,177,670 to 1,178,677
_1152
Synpcc7942_1153: digE - hypothetical protein, at 1,179,295 to 1,181,139
digE
Position (kb) 1177
1178
1179 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1177.466 kb on + strand at 1177.480 kb on - strand at 1177.514 kb on - strand at 1177.529 kb on - strand at 1177.531 kb on - strand at 1177.546 kb on + strand at 1177.550 kb on + strand at 1177.580 kb on + strand at 1177.589 kb on - strand at 1177.604 kb on - strand at 1177.612 kb on + strand at 1177.617 kb on - strand at 1177.622 kb on - strand at 1177.647 kb on - strand at 1177.668 kb on + strand at 1177.676 kb on - strand at 1177.676 kb on - strand at 1177.676 kb on - strand at 1177.676 kb on - strand at 1177.676 kb on - strand at 1177.681 kb on - strand at 1177.681 kb on - strand at 1177.688 kb on - strand at 1177.695 kb on - strand at 1177.713 kb on - strand at 1177.713 kb on - strand at 1177.714 kb on - strand at 1177.714 kb on - strand at 1177.728 kb on + strand at 1177.728 kb on - strand at 1177.729 kb on - strand at 1177.751 kb on - strand at 1177.761 kb on - strand at 1177.761 kb on - strand at 1177.765 kb on + strand at 1177.787 kb on + strand at 1177.833 kb on - strand, within Synpcc7942_1152 at 1177.838 kb on + strand, within Synpcc7942_1152 at 1177.891 kb on + strand, within Synpcc7942_1152 at 1177.891 kb on + strand, within Synpcc7942_1152 at 1177.914 kb on - strand, within Synpcc7942_1152 at 1177.915 kb on - strand, within Synpcc7942_1152 at 1177.928 kb on - strand, within Synpcc7942_1152 at 1177.955 kb on - strand, within Synpcc7942_1152 at 1177.958 kb on + strand, within Synpcc7942_1152 at 1177.990 kb on - strand, within Synpcc7942_1152 at 1178.039 kb on + strand, within Synpcc7942_1152 at 1178.045 kb on - strand, within Synpcc7942_1152 at 1178.054 kb on + strand, within Synpcc7942_1152 at 1178.054 kb on + strand, within Synpcc7942_1152 at 1178.120 kb on + strand, within Synpcc7942_1152 at 1178.147 kb on - strand, within Synpcc7942_1152 at 1178.147 kb on - strand, within Synpcc7942_1152 at 1178.216 kb on + strand, within Synpcc7942_1152 at 1178.216 kb on + strand, within Synpcc7942_1152 at 1178.216 kb on + strand, within Synpcc7942_1152 at 1178.262 kb on - strand, within Synpcc7942_1152 at 1178.312 kb on - strand, within Synpcc7942_1152 at 1178.319 kb on + strand, within Synpcc7942_1152 at 1178.338 kb on + strand, within Synpcc7942_1152 at 1178.352 kb on + strand, within Synpcc7942_1152 at 1178.361 kb on - strand, within Synpcc7942_1152 at 1178.361 kb on - strand, within Synpcc7942_1152 at 1178.361 kb on - strand, within Synpcc7942_1152 at 1178.363 kb on + strand, within Synpcc7942_1152 at 1178.381 kb on + strand, within Synpcc7942_1152 at 1178.381 kb on + strand, within Synpcc7942_1152 at 1178.381 kb on + strand, within Synpcc7942_1152 at 1178.381 kb on + strand at 1178.382 kb on - strand, within Synpcc7942_1152 at 1178.389 kb on - strand, within Synpcc7942_1152 at 1178.389 kb on - strand, within Synpcc7942_1152 at 1178.389 kb on - strand, within Synpcc7942_1152 at 1178.389 kb on - strand, within Synpcc7942_1152 at 1178.405 kb on + strand, within Synpcc7942_1152 at 1178.432 kb on + strand, within Synpcc7942_1152 at 1178.482 kb on + strand, within Synpcc7942_1152 at 1178.498 kb on + strand, within Synpcc7942_1152 at 1178.506 kb on - strand, within Synpcc7942_1152 at 1178.599 kb on - strand at 1178.628 kb on - strand at 1178.629 kb on - strand at 1178.633 kb on + strand at 1178.651 kb on - strand at 1178.701 kb on + strand at 1178.701 kb on + strand at 1178.709 kb on - strand at 1178.709 kb on - strand at 1178.740 kb on - strand at 1178.742 kb on - strand at 1178.755 kb on - strand at 1178.795 kb on + strand at 1178.834 kb on + strand at 1178.834 kb on + strand at 1178.834 kb on + strand at 1178.834 kb on + strand at 1178.842 kb on - strand at 1178.842 kb on - strand at 1178.842 kb on - strand at 1178.842 kb on - strand at 1178.842 kb on - strand at 1178.868 kb on - strand at 1178.868 kb on - strand at 1178.895 kb on + strand at 1178.907 kb on - strand at 1178.909 kb on - strand at 1179.072 kb on + strand at 1179.087 kb on + strand at 1179.121 kb on + strand at 1179.137 kb on + strand at 1179.159 kb on + strand at 1179.167 kb on - strand at 1179.167 kb on - strand at 1179.167 kb on - strand at 1179.183 kb on + strand at 1179.183 kb on + strand at 1179.183 kb on + strand at 1179.191 kb on - strand at 1179.191 kb on - strand at 1179.191 kb on - strand at 1179.191 kb on - strand at 1179.191 kb on - strand at 1179.191 kb on - strand at 1179.208 kb on - strand at 1179.217 kb on + strand at 1179.218 kb on + strand at 1179.218 kb on + strand at 1179.218 kb on + strand at 1179.256 kb on + strand at 1179.283 kb on + strand at 1179.283 kb on + strand at 1179.351 kb on - strand at 1179.353 kb on + strand at 1179.358 kb on + strand at 1179.361 kb on - strand at 1179.361 kb on - strand at 1179.377 kb on + strand at 1179.379 kb on + strand at 1179.385 kb on - strand at 1179.385 kb on - strand at 1179.406 kb on - strand at 1179.443 kb on - strand at 1179.446 kb on + strand at 1179.455 kb on - strand at 1179.455 kb on - strand at 1179.456 kb on + strand at 1179.461 kb on + strand at 1179.464 kb on + strand at 1179.474 kb on - strand at 1179.477 kb on - strand at 1179.480 kb on + strand, within digE at 1179.520 kb on - strand, within digE at 1179.525 kb on - strand, within digE at 1179.530 kb on - strand, within digE at 1179.545 kb on + strand, within digE at 1179.557 kb on + strand, within digE at 1179.557 kb on - strand, within digE at 1179.594 kb on + strand, within digE at 1179.594 kb on + strand, within digE at 1179.610 kb on + strand, within digE at 1179.618 kb on - strand, within digE at 1179.618 kb on - strand, within digE at 1179.618 kb on - strand, within digE at 1179.629 kb on - strand, within digE at 1179.646 kb on - strand, within digE at 1179.653 kb on - strand, within digE at 1179.671 kb on + strand, within digE at 1179.671 kb on - strand, within digE
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,177,466 + +0.4 1,177,480 - -0.5 1,177,514 - +0.0 1,177,529 - +0.1 1,177,531 - -2.8 1,177,546 + +0.0 1,177,550 + +0.1 1,177,580 + +0.2 1,177,589 - -0.7 1,177,604 - +1.6 1,177,612 + +0.1 1,177,617 - +0.3 1,177,622 - +1.9 1,177,647 - +0.2 1,177,668 + -3.0 1,177,676 - +2.7 1,177,676 - +3.8 1,177,676 - +3.1 1,177,676 - +2.4 1,177,676 - +3.6 1,177,681 - +0.1 1,177,681 - +1.6 1,177,688 - -0.6 1,177,695 - +2.6 1,177,713 - +3.0 1,177,713 - +2.6 1,177,714 - -0.1 1,177,714 - +2.9 1,177,728 + -1.7 1,177,728 - -2.0 1,177,729 - -2.3 1,177,751 - -2.2 1,177,761 - -2.4 1,177,761 - -2.7 1,177,765 + -3.6 1,177,787 + -1.1 1,177,833 - Synpcc7942_1152 0.16 -4.5 1,177,838 + Synpcc7942_1152 0.17 -3.6 1,177,891 + Synpcc7942_1152 0.22 -3.4 1,177,891 + Synpcc7942_1152 0.22 -1.7 1,177,914 - Synpcc7942_1152 0.24 -0.9 1,177,915 - Synpcc7942_1152 0.24 -2.3 1,177,928 - Synpcc7942_1152 0.26 -1.4 1,177,955 - Synpcc7942_1152 0.28 +0.2 1,177,958 + Synpcc7942_1152 0.29 -3.8 1,177,990 - Synpcc7942_1152 0.32 +0.6 1,178,039 + Synpcc7942_1152 0.37 -2.8 1,178,045 - Synpcc7942_1152 0.37 -2.8 1,178,054 + Synpcc7942_1152 0.38 -2.1 1,178,054 + Synpcc7942_1152 0.38 -0.1 1,178,120 + Synpcc7942_1152 0.45 -3.5 1,178,147 - Synpcc7942_1152 0.47 -2.5 1,178,147 - Synpcc7942_1152 0.47 -2.1 1,178,216 + Synpcc7942_1152 0.54 -4.4 1,178,216 + Synpcc7942_1152 0.54 -2.1 1,178,216 + Synpcc7942_1152 0.54 -1.1 1,178,262 - Synpcc7942_1152 0.59 -5.0 1,178,312 - Synpcc7942_1152 0.64 -2.5 1,178,319 + Synpcc7942_1152 0.64 -3.9 1,178,338 + Synpcc7942_1152 0.66 -3.6 1,178,352 + Synpcc7942_1152 0.68 -2.6 1,178,361 - Synpcc7942_1152 0.69 -2.5 1,178,361 - Synpcc7942_1152 0.69 -2.9 1,178,361 - Synpcc7942_1152 0.69 -3.2 1,178,363 + Synpcc7942_1152 0.69 -4.2 1,178,381 + Synpcc7942_1152 0.71 +0.5 1,178,381 + Synpcc7942_1152 0.71 -0.1 1,178,381 + Synpcc7942_1152 0.71 -2.5 1,178,381 + -1.1 1,178,382 - Synpcc7942_1152 0.71 -2.4 1,178,389 - Synpcc7942_1152 0.71 -2.4 1,178,389 - Synpcc7942_1152 0.71 -1.5 1,178,389 - Synpcc7942_1152 0.71 -2.9 1,178,389 - Synpcc7942_1152 0.71 -4.0 1,178,405 + Synpcc7942_1152 0.73 -4.6 1,178,432 + Synpcc7942_1152 0.76 -2.1 1,178,482 + Synpcc7942_1152 0.81 -3.1 1,178,498 + Synpcc7942_1152 0.82 -3.4 1,178,506 - Synpcc7942_1152 0.83 -2.9 1,178,599 - -1.9 1,178,628 - -1.1 1,178,629 - -4.8 1,178,633 + -3.5 1,178,651 - -2.1 1,178,701 + -2.7 1,178,701 + -2.6 1,178,709 - +1.0 1,178,709 - -3.4 1,178,740 - +0.0 1,178,742 - -1.5 1,178,755 - -3.1 1,178,795 + -1.9 1,178,834 + -1.7 1,178,834 + -2.8 1,178,834 + -2.1 1,178,834 + -2.5 1,178,842 - -4.5 1,178,842 - -4.4 1,178,842 - -4.4 1,178,842 - -2.7 1,178,842 - -5.1 1,178,868 - -0.9 1,178,868 - -4.2 1,178,895 + -2.7 1,178,907 - -1.9 1,178,909 - +1.0 1,179,072 + -2.3 1,179,087 + +1.5 1,179,121 + -1.2 1,179,137 + -3.0 1,179,159 + +2.6 1,179,167 - -1.2 1,179,167 - +1.7 1,179,167 - -1.5 1,179,183 + +1.2 1,179,183 + +2.4 1,179,183 + -1.9 1,179,191 - +1.8 1,179,191 - -0.8 1,179,191 - +2.1 1,179,191 - -4.5 1,179,191 - +0.3 1,179,191 - +2.2 1,179,208 - +0.5 1,179,217 + -0.1 1,179,218 + -3.2 1,179,218 + -1.9 1,179,218 + +1.9 1,179,256 + +1.6 1,179,283 + +1.1 1,179,283 + -3.9 1,179,351 - +1.6 1,179,353 + +0.4 1,179,358 + -0.1 1,179,361 - -1.8 1,179,361 - +0.8 1,179,377 + -0.5 1,179,379 + +1.7 1,179,385 - +0.0 1,179,385 - -0.1 1,179,406 - +0.6 1,179,443 - -0.3 1,179,446 + -3.4 1,179,455 - -0.9 1,179,455 - +1.3 1,179,456 + -1.3 1,179,461 + +0.3 1,179,464 + -2.1 1,179,474 - -2.7 1,179,477 - +0.3 1,179,480 + digE Synpcc7942_1153 0.10 +0.8 1,179,520 - digE Synpcc7942_1153 0.12 +1.4 1,179,525 - digE Synpcc7942_1153 0.12 -0.2 1,179,530 - digE Synpcc7942_1153 0.13 +1.9 1,179,545 + digE Synpcc7942_1153 0.14 +1.7 1,179,557 + digE Synpcc7942_1153 0.14 -1.5 1,179,557 - digE Synpcc7942_1153 0.14 +1.1 1,179,594 + digE Synpcc7942_1153 0.16 +0.8 1,179,594 + digE Synpcc7942_1153 0.16 -3.7 1,179,610 + digE Synpcc7942_1153 0.17 -1.0 1,179,618 - digE Synpcc7942_1153 0.18 -1.7 1,179,618 - digE Synpcc7942_1153 0.18 -1.3 1,179,618 - digE Synpcc7942_1153 0.18 -1.4 1,179,629 - digE Synpcc7942_1153 0.18 +0.9 1,179,646 - digE Synpcc7942_1153 0.19 -2.3 1,179,653 - digE Synpcc7942_1153 0.19 -0.5 1,179,671 + digE Synpcc7942_1153 0.20 +0.1 1,179,671 - digE Synpcc7942_1153 0.20 +2.2
Or see this region's nucleotide sequence