Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0954 and Synpcc7942_0955 overlap by 29 nucleotides Synpcc7942_0955 and Synpcc7942_0956 are separated by 135 nucleotides Synpcc7942_0956 and cobO are separated by 3 nucleotides cobO and purN are separated by 6 nucleotides
Synpcc7942_0954: Synpcc7942_0954 - glycine cleavage T-protein-like, at 962,266 to 963,300
_0954
Synpcc7942_0955: Synpcc7942_0955 - hypothetical protein, at 963,272 to 963,790
_0955
Synpcc7942_0956: Synpcc7942_0956 - hypothetical protein, at 963,926 to 965,068
_0956
Synpcc7942_0957: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 965,072 to 965,719
cobO
Synpcc7942_0958: purN - phosphoribosylglycinamide formyltransferase, at 965,726 to 966,355
purN
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on + strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.928 kb on - strand, within Synpcc7942_0954 at 962.964 kb on + strand, within Synpcc7942_0954 at 962.969 kb on + strand, within Synpcc7942_0954 at 963.006 kb on - strand, within Synpcc7942_0954 at 963.028 kb on - strand, within Synpcc7942_0954 at 963.031 kb on + strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.041 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.049 kb on - strand, within Synpcc7942_0954 at 963.094 kb on + strand, within Synpcc7942_0954 at 963.097 kb on - strand, within Synpcc7942_0954 at 963.112 kb on + strand, within Synpcc7942_0954 at 963.147 kb on - strand, within Synpcc7942_0954 at 963.154 kb on - strand, within Synpcc7942_0954 at 963.157 kb on - strand, within Synpcc7942_0954 at 963.159 kb on + strand, within Synpcc7942_0954 at 963.192 kb on + strand, within Synpcc7942_0954 at 963.200 kb on + strand at 963.208 kb on - strand at 963.220 kb on - strand at 963.249 kb on + strand at 963.249 kb on + strand at 963.250 kb on - strand at 963.257 kb on - strand at 963.262 kb on - strand at 963.314 kb on - strand at 963.331 kb on - strand, within Synpcc7942_0955 at 963.379 kb on + strand, within Synpcc7942_0955 at 963.397 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand at 963.449 kb on - strand, within Synpcc7942_0955 at 963.449 kb on - strand, within Synpcc7942_0955 at 963.454 kb on - strand, within Synpcc7942_0955 at 963.480 kb on - strand, within Synpcc7942_0955 at 963.494 kb on + strand, within Synpcc7942_0955 at 963.497 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.499 kb on + strand, within Synpcc7942_0955 at 963.502 kb on - strand, within Synpcc7942_0955 at 963.506 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.507 kb on - strand, within Synpcc7942_0955 at 963.508 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.513 kb on + strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.521 kb on - strand, within Synpcc7942_0955 at 963.523 kb on + strand at 963.523 kb on + strand, within Synpcc7942_0955 at 963.554 kb on + strand, within Synpcc7942_0955 at 963.598 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.599 kb on + strand, within Synpcc7942_0955 at 963.606 kb on - strand, within Synpcc7942_0955 at 963.640 kb on + strand, within Synpcc7942_0955 at 963.647 kb on + strand, within Synpcc7942_0955 at 963.648 kb on - strand, within Synpcc7942_0955 at 963.674 kb on - strand, within Synpcc7942_0955 at 963.676 kb on + strand, within Synpcc7942_0955 at 963.769 kb on - strand at 963.801 kb on - strand at 963.801 kb on - strand at 963.823 kb on + strand at 963.824 kb on - strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.863 kb on + strand at 963.864 kb on + strand at 963.865 kb on + strand at 963.866 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.871 kb on - strand at 963.878 kb on + strand at 963.878 kb on + strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.886 kb on - strand at 963.887 kb on - strand at 963.897 kb on - strand at 964.014 kb on + strand at 964.023 kb on - strand at 964.043 kb on - strand, within Synpcc7942_0956 at 964.043 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.068 kb on - strand, within Synpcc7942_0956 at 964.138 kb on - strand, within Synpcc7942_0956 at 964.150 kb on - strand, within Synpcc7942_0956 at 964.158 kb on - strand, within Synpcc7942_0956 at 964.172 kb on + strand, within Synpcc7942_0956 at 964.256 kb on + strand, within Synpcc7942_0956 at 964.280 kb on + strand, within Synpcc7942_0956 at 964.304 kb on - strand, within Synpcc7942_0956 at 964.310 kb on + strand, within Synpcc7942_0956 at 964.354 kb on + strand, within Synpcc7942_0956 at 964.357 kb on + strand, within Synpcc7942_0956 at 964.362 kb on - strand, within Synpcc7942_0956 at 964.402 kb on + strand, within Synpcc7942_0956 at 964.426 kb on + strand, within Synpcc7942_0956 at 964.439 kb on - strand, within Synpcc7942_0956 at 964.532 kb on - strand, within Synpcc7942_0956 at 964.595 kb on - strand, within Synpcc7942_0956 at 964.670 kb on + strand, within Synpcc7942_0956 at 964.758 kb on + strand, within Synpcc7942_0956 at 964.766 kb on - strand, within Synpcc7942_0956 at 964.931 kb on - strand, within Synpcc7942_0956 at 964.947 kb on + strand, within Synpcc7942_0956 at 965.021 kb on + strand at 965.040 kb on - strand at 965.042 kb on + strand at 965.042 kb on + strand at 965.045 kb on - strand at 965.055 kb on + strand at 965.062 kb on - strand at 965.751 kb on + strand at 965.778 kb on + strand at 965.780 kb on - strand at 965.822 kb on - strand, within purN at 965.882 kb on + strand, within purN at 965.901 kb on + strand, within purN at 965.912 kb on + strand, within purN at 965.913 kb on + strand, within purN at 965.955 kb on + strand at 965.964 kb on - strand, within purN at 965.969 kb on - strand, within purN at 965.981 kb on - strand, within purN at 966.008 kb on + strand, within purN at 966.024 kb on + strand, within purN
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 962,928 + Synpcc7942_0954 0.64 -1.7 962,928 + Synpcc7942_0954 0.64 -3.3 962,928 - Synpcc7942_0954 0.64 -1.4 962,928 - Synpcc7942_0954 0.64 -0.0 962,964 + Synpcc7942_0954 0.67 +0.6 962,969 + Synpcc7942_0954 0.68 -0.1 963,006 - Synpcc7942_0954 0.71 +0.5 963,028 - Synpcc7942_0954 0.74 -0.3 963,031 + Synpcc7942_0954 0.74 -2.1 963,041 - Synpcc7942_0954 0.75 -2.8 963,041 - Synpcc7942_0954 0.75 +1.9 963,049 - Synpcc7942_0954 0.76 -2.5 963,049 - Synpcc7942_0954 0.76 -0.5 963,094 + Synpcc7942_0954 0.80 -0.2 963,097 - Synpcc7942_0954 0.80 +0.9 963,112 + Synpcc7942_0954 0.82 -2.7 963,147 - Synpcc7942_0954 0.85 -0.4 963,154 - Synpcc7942_0954 0.86 -0.4 963,157 - Synpcc7942_0954 0.86 -1.0 963,159 + Synpcc7942_0954 0.86 +0.7 963,192 + Synpcc7942_0954 0.89 -0.9 963,200 + -3.8 963,208 - +0.8 963,220 - +0.1 963,249 + -0.8 963,249 + -0.9 963,250 - +0.5 963,257 - +0.7 963,262 - -0.6 963,314 - +2.5 963,331 - Synpcc7942_0955 0.11 -1.6 963,379 + Synpcc7942_0955 0.21 +1.3 963,397 - Synpcc7942_0955 0.24 -0.7 963,449 - Synpcc7942_0955 0.34 -0.8 963,449 - +0.8 963,449 - Synpcc7942_0955 0.34 +1.9 963,449 - Synpcc7942_0955 0.34 +0.0 963,454 - Synpcc7942_0955 0.35 +0.0 963,480 - Synpcc7942_0955 0.40 -0.2 963,494 + Synpcc7942_0955 0.43 -1.3 963,497 + Synpcc7942_0955 0.43 -0.2 963,499 + Synpcc7942_0955 0.44 +0.4 963,499 + Synpcc7942_0955 0.44 +2.7 963,499 + Synpcc7942_0955 0.44 +2.2 963,502 - Synpcc7942_0955 0.44 +2.6 963,506 - Synpcc7942_0955 0.45 +1.4 963,507 - Synpcc7942_0955 0.45 +0.1 963,507 - Synpcc7942_0955 0.45 +2.2 963,508 + Synpcc7942_0955 0.45 +0.1 963,513 + Synpcc7942_0955 0.46 +0.6 963,513 + Synpcc7942_0955 0.46 +2.0 963,513 + Synpcc7942_0955 0.46 -2.7 963,521 - Synpcc7942_0955 0.48 -0.5 963,521 - Synpcc7942_0955 0.48 +2.7 963,521 - Synpcc7942_0955 0.48 +0.1 963,521 - Synpcc7942_0955 0.48 +0.7 963,521 - Synpcc7942_0955 0.48 +0.7 963,521 - Synpcc7942_0955 0.48 -0.1 963,521 - Synpcc7942_0955 0.48 -1.0 963,521 - Synpcc7942_0955 0.48 -2.8 963,521 - Synpcc7942_0955 0.48 -1.7 963,523 + -2.2 963,523 + Synpcc7942_0955 0.48 +1.4 963,554 + Synpcc7942_0955 0.54 -0.1 963,598 + Synpcc7942_0955 0.63 -0.8 963,599 + Synpcc7942_0955 0.63 -1.0 963,599 + Synpcc7942_0955 0.63 +1.1 963,606 - Synpcc7942_0955 0.64 +2.2 963,640 + Synpcc7942_0955 0.71 +1.4 963,647 + Synpcc7942_0955 0.72 +1.7 963,648 - Synpcc7942_0955 0.72 +0.4 963,674 - Synpcc7942_0955 0.77 +1.5 963,676 + Synpcc7942_0955 0.78 +2.5 963,769 - +0.6 963,801 - +1.3 963,801 - +1.4 963,823 + +1.7 963,824 - -0.4 963,863 + +0.5 963,863 + -0.8 963,863 + +1.7 963,863 + +1.8 963,863 + +0.0 963,864 + -0.2 963,865 + +1.1 963,866 - +1.0 963,871 - +1.3 963,871 - +1.2 963,871 - +0.6 963,871 - -0.3 963,871 - +0.9 963,871 - -3.1 963,871 - +0.5 963,878 + +0.5 963,878 + +1.0 963,886 - -2.4 963,886 - -2.8 963,886 - -0.1 963,887 - +0.8 963,897 - -1.4 964,014 + +1.2 964,023 - -0.2 964,043 - Synpcc7942_0956 0.10 +0.2 964,043 - Synpcc7942_0956 0.10 -2.3 964,068 - Synpcc7942_0956 0.12 +0.6 964,068 - Synpcc7942_0956 0.12 -0.4 964,138 - Synpcc7942_0956 0.19 +0.2 964,150 - Synpcc7942_0956 0.20 -1.1 964,158 - Synpcc7942_0956 0.20 -1.2 964,172 + Synpcc7942_0956 0.22 -0.8 964,256 + Synpcc7942_0956 0.29 +0.1 964,280 + Synpcc7942_0956 0.31 -0.8 964,304 - Synpcc7942_0956 0.33 -1.2 964,310 + Synpcc7942_0956 0.34 -0.3 964,354 + Synpcc7942_0956 0.37 -0.6 964,357 + Synpcc7942_0956 0.38 -1.4 964,362 - Synpcc7942_0956 0.38 +1.5 964,402 + Synpcc7942_0956 0.42 -1.0 964,426 + Synpcc7942_0956 0.44 -0.3 964,439 - Synpcc7942_0956 0.45 -0.7 964,532 - Synpcc7942_0956 0.53 -2.0 964,595 - Synpcc7942_0956 0.59 -3.4 964,670 + Synpcc7942_0956 0.65 +1.2 964,758 + Synpcc7942_0956 0.73 -3.0 964,766 - Synpcc7942_0956 0.73 -4.5 964,931 - Synpcc7942_0956 0.88 -0.7 964,947 + Synpcc7942_0956 0.89 -3.8 965,021 + -1.0 965,040 - -2.8 965,042 + +0.5 965,042 + -0.8 965,045 - -1.1 965,055 + +1.1 965,062 - +0.3 965,751 + -3.2 965,778 + -3.7 965,780 - -1.6 965,822 - purN Synpcc7942_0958 0.15 +1.7 965,882 + purN Synpcc7942_0958 0.25 +1.6 965,901 + purN Synpcc7942_0958 0.28 +0.5 965,912 + purN Synpcc7942_0958 0.30 -3.0 965,913 + purN Synpcc7942_0958 0.30 +1.5 965,955 + +3.3 965,964 - purN Synpcc7942_0958 0.38 -0.3 965,969 - purN Synpcc7942_0958 0.39 -0.5 965,981 - purN Synpcc7942_0958 0.40 +0.8 966,008 + purN Synpcc7942_0958 0.45 +2.3 966,024 + purN Synpcc7942_0958 0.47 -1.3
Or see this region's nucleotide sequence