Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0945 and aoxA are separated by 373 nucleotides aoxA and ggtA are separated by 18 nucleotides
Synpcc7942_0945: Synpcc7942_0945 - hypothetical protein, at 952,793 to 953,767
_0945
Synpcc7942_0946: aoxA - UDP-galactopyranose mutase, at 954,141 to 955,628
aoxA
Synpcc7942_0947: ggtA - ATPase, at 955,647 to 956,714
ggtA
Position (kb) 954
955
956 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 953.191 kb on + strand, within Synpcc7942_0945 at 953.425 kb on + strand, within Synpcc7942_0945 at 953.443 kb on - strand, within Synpcc7942_0945 at 953.514 kb on + strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.648 kb on - strand, within Synpcc7942_0945 at 953.650 kb on - strand, within Synpcc7942_0945 at 953.652 kb on + strand, within Synpcc7942_0945 at 953.675 kb on + strand at 953.675 kb on + strand at 953.679 kb on + strand at 953.710 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.827 kb on + strand at 953.850 kb on + strand at 953.874 kb on + strand at 953.911 kb on + strand at 953.928 kb on - strand at 954.001 kb on - strand at 954.037 kb on - strand at 954.057 kb on - strand at 954.060 kb on - strand at 954.071 kb on + strand at 954.075 kb on - strand at 954.075 kb on - strand at 954.170 kb on + strand at 954.178 kb on - strand at 954.230 kb on + strand at 954.231 kb on + strand at 954.238 kb on - strand at 954.239 kb on - strand at 954.239 kb on - strand at 954.244 kb on - strand at 954.250 kb on - strand at 954.250 kb on - strand at 954.252 kb on + strand at 954.260 kb on - strand at 954.267 kb on + strand at 954.267 kb on + strand at 954.275 kb on - strand at 954.302 kb on - strand, within aoxA at 954.326 kb on - strand at 954.372 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.407 kb on - strand, within aoxA at 954.431 kb on - strand, within aoxA at 954.446 kb on - strand, within aoxA at 954.447 kb on - strand, within aoxA at 954.468 kb on - strand, within aoxA at 954.480 kb on + strand, within aoxA at 954.482 kb on - strand, within aoxA at 954.492 kb on - strand, within aoxA at 954.546 kb on + strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.566 kb on + strand, within aoxA at 954.567 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.606 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.635 kb on + strand, within aoxA at 954.651 kb on + strand, within aoxA at 954.654 kb on - strand, within aoxA at 954.662 kb on + strand, within aoxA at 954.673 kb on + strand, within aoxA at 954.683 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.729 kb on + strand, within aoxA at 954.737 kb on + strand, within aoxA at 954.737 kb on - strand, within aoxA at 954.744 kb on - strand, within aoxA at 954.788 kb on - strand, within aoxA at 954.871 kb on - strand, within aoxA at 954.878 kb on + strand, within aoxA at 954.886 kb on - strand, within aoxA at 954.886 kb on - strand, within aoxA at 954.912 kb on - strand, within aoxA at 954.922 kb on - strand, within aoxA at 954.953 kb on + strand, within aoxA at 954.975 kb on + strand, within aoxA at 955.000 kb on - strand, within aoxA at 955.036 kb on + strand, within aoxA at 955.045 kb on - strand, within aoxA at 955.076 kb on - strand, within aoxA at 955.084 kb on + strand, within aoxA at 955.094 kb on + strand, within aoxA at 955.102 kb on - strand, within aoxA at 955.111 kb on + strand, within aoxA at 955.133 kb on - strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.152 kb on + strand, within aoxA at 955.160 kb on - strand, within aoxA at 955.160 kb on - strand at 955.161 kb on + strand, within aoxA at 955.161 kb on + strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.169 kb on - strand, within aoxA at 955.181 kb on - strand, within aoxA at 955.198 kb on + strand, within aoxA at 955.203 kb on + strand, within aoxA at 955.221 kb on + strand, within aoxA at 955.221 kb on + strand, within aoxA at 955.222 kb on - strand, within aoxA at 955.238 kb on - strand, within aoxA at 955.242 kb on + strand, within aoxA at 955.249 kb on - strand, within aoxA at 955.295 kb on + strand, within aoxA at 955.295 kb on + strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.303 kb on - strand, within aoxA at 955.331 kb on + strand, within aoxA at 955.339 kb on - strand, within aoxA at 955.358 kb on - strand, within aoxA at 955.362 kb on - strand, within aoxA at 955.394 kb on - strand, within aoxA at 955.408 kb on - strand, within aoxA at 955.417 kb on + strand, within aoxA at 955.417 kb on + strand, within aoxA at 955.425 kb on - strand, within aoxA at 955.428 kb on + strand, within aoxA at 955.451 kb on - strand, within aoxA at 955.477 kb on + strand, within aoxA at 955.477 kb on + strand, within aoxA at 955.508 kb on + strand at 955.545 kb on + strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.554 kb on - strand at 955.578 kb on + strand at 955.583 kb on + strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.591 kb on - strand at 955.632 kb on - strand at 955.637 kb on - strand at 955.639 kb on + strand at 955.645 kb on + strand at 955.707 kb on + strand at 955.707 kb on + strand at 955.715 kb on - strand at 955.715 kb on - strand at 955.720 kb on + strand at 955.727 kb on + strand at 955.727 kb on + strand at 955.728 kb on - strand at 955.760 kb on - strand, within ggtA at 955.768 kb on - strand, within ggtA at 955.768 kb on - strand, within ggtA at 955.786 kb on + strand, within ggtA at 955.794 kb on - strand, within ggtA at 955.824 kb on - strand, within ggtA at 955.843 kb on + strand, within ggtA at 955.849 kb on + strand, within ggtA at 955.858 kb on - strand, within ggtA at 955.865 kb on + strand, within ggtA at 955.890 kb on + strand, within ggtA at 955.953 kb on + strand, within ggtA at 955.956 kb on - strand, within ggtA at 955.956 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.961 kb on - strand, within ggtA at 955.999 kb on - strand, within ggtA at 956.022 kb on - strand, within ggtA at 956.080 kb on + strand, within ggtA at 956.080 kb on - strand, within ggtA at 956.090 kb on + strand, within ggtA at 956.090 kb on - strand, within ggtA at 956.104 kb on + strand, within ggtA at 956.112 kb on - strand, within ggtA at 956.127 kb on + strand, within ggtA at 956.132 kb on + strand, within ggtA at 956.135 kb on - strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.137 kb on + strand, within ggtA at 956.145 kb on - strand, within ggtA at 956.164 kb on - strand, within ggtA at 956.171 kb on + strand, within ggtA at 956.181 kb on - strand, within ggtA at 956.284 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.304 kb on + strand, within ggtA at 956.339 kb on + strand, within ggtA at 956.347 kb on - strand, within ggtA at 956.347 kb on - strand, within ggtA at 956.438 kb on + strand, within ggtA at 956.438 kb on + strand, within ggtA at 956.443 kb on + strand, within ggtA at 956.450 kb on + strand, within ggtA at 956.458 kb on - strand, within ggtA at 956.522 kb on + strand, within ggtA at 956.565 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.572 kb on + strand, within ggtA at 956.580 kb on - strand, within ggtA at 956.580 kb on - strand, within ggtA at 956.604 kb on - strand, within ggtA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 953,191 + Synpcc7942_0945 0.41 +2.4 953,425 + Synpcc7942_0945 0.65 +0.9 953,443 - Synpcc7942_0945 0.67 +1.1 953,514 + Synpcc7942_0945 0.74 -2.0 953,613 - Synpcc7942_0945 0.84 -1.7 953,613 - Synpcc7942_0945 0.84 +0.8 953,648 - Synpcc7942_0945 0.88 +1.0 953,650 - Synpcc7942_0945 0.88 +0.9 953,652 + Synpcc7942_0945 0.88 -0.1 953,675 + +0.3 953,675 + -0.2 953,679 + -2.2 953,710 + +0.4 953,712 + -2.1 953,712 + -1.6 953,712 + +0.2 953,712 + -0.2 953,720 - +0.5 953,720 - +0.2 953,720 - -1.1 953,827 + -0.6 953,850 + -1.0 953,874 + +2.1 953,911 + +0.5 953,928 - +0.5 954,001 - +0.7 954,037 - +0.6 954,057 - -3.1 954,060 - +1.7 954,071 + +0.5 954,075 - -0.1 954,075 - +0.9 954,170 + +0.5 954,178 - +0.4 954,230 + +0.9 954,231 + +0.1 954,238 - -1.6 954,239 - +0.4 954,239 - +1.7 954,244 - +0.7 954,250 - +0.4 954,250 - -0.1 954,252 + -1.0 954,260 - -1.3 954,267 + -4.8 954,267 + +0.9 954,275 - -2.9 954,302 - aoxA Synpcc7942_0946 0.11 -3.0 954,326 - +1.7 954,372 + aoxA Synpcc7942_0946 0.16 +1.3 954,389 + aoxA Synpcc7942_0946 0.17 +0.7 954,389 + aoxA Synpcc7942_0946 0.17 -1.5 954,389 + aoxA Synpcc7942_0946 0.17 +1.4 954,389 + aoxA Synpcc7942_0946 0.17 -3.4 954,389 + aoxA Synpcc7942_0946 0.17 -1.3 954,389 + aoxA Synpcc7942_0946 0.17 +1.3 954,397 - aoxA Synpcc7942_0946 0.17 -1.9 954,397 - aoxA Synpcc7942_0946 0.17 -2.8 954,407 - aoxA Synpcc7942_0946 0.18 +0.6 954,431 - aoxA Synpcc7942_0946 0.19 +2.0 954,446 - aoxA Synpcc7942_0946 0.20 +0.4 954,447 - aoxA Synpcc7942_0946 0.21 -0.1 954,468 - aoxA Synpcc7942_0946 0.22 -2.9 954,480 + aoxA Synpcc7942_0946 0.23 +0.3 954,482 - aoxA Synpcc7942_0946 0.23 +1.6 954,492 - aoxA Synpcc7942_0946 0.24 -0.0 954,546 + aoxA Synpcc7942_0946 0.27 +1.4 954,554 - aoxA Synpcc7942_0946 0.28 +0.0 954,554 - aoxA Synpcc7942_0946 0.28 +0.4 954,554 - aoxA Synpcc7942_0946 0.28 -0.7 954,554 - aoxA Synpcc7942_0946 0.28 -0.3 954,566 + aoxA Synpcc7942_0946 0.29 +0.1 954,567 - aoxA Synpcc7942_0946 0.29 -0.8 954,569 - aoxA Synpcc7942_0946 0.29 +0.3 954,569 - aoxA Synpcc7942_0946 0.29 -3.4 954,595 + aoxA Synpcc7942_0946 0.31 -2.7 954,595 + aoxA Synpcc7942_0946 0.31 +0.2 954,606 + aoxA Synpcc7942_0946 0.31 +1.0 954,608 + aoxA Synpcc7942_0946 0.31 +1.3 954,608 + aoxA Synpcc7942_0946 0.31 -3.8 954,614 - aoxA Synpcc7942_0946 0.32 +0.0 954,614 - aoxA Synpcc7942_0946 0.32 -1.6 954,635 + aoxA Synpcc7942_0946 0.33 +0.9 954,651 + aoxA Synpcc7942_0946 0.34 -0.9 954,654 - aoxA Synpcc7942_0946 0.34 -3.0 954,662 + aoxA Synpcc7942_0946 0.35 +0.4 954,673 + aoxA Synpcc7942_0946 0.36 +2.5 954,683 - aoxA Synpcc7942_0946 0.36 +0.4 954,718 - aoxA Synpcc7942_0946 0.39 +0.7 954,718 - aoxA Synpcc7942_0946 0.39 +0.1 954,729 + aoxA Synpcc7942_0946 0.40 +1.1 954,737 + aoxA Synpcc7942_0946 0.40 -0.3 954,737 - aoxA Synpcc7942_0946 0.40 -0.3 954,744 - aoxA Synpcc7942_0946 0.41 +0.7 954,788 - aoxA Synpcc7942_0946 0.43 -0.1 954,871 - aoxA Synpcc7942_0946 0.49 -0.8 954,878 + aoxA Synpcc7942_0946 0.50 -0.7 954,886 - aoxA Synpcc7942_0946 0.50 -0.3 954,886 - aoxA Synpcc7942_0946 0.50 +0.0 954,912 - aoxA Synpcc7942_0946 0.52 -0.2 954,922 - aoxA Synpcc7942_0946 0.52 +2.0 954,953 + aoxA Synpcc7942_0946 0.55 +1.8 954,975 + aoxA Synpcc7942_0946 0.56 -0.1 955,000 - aoxA Synpcc7942_0946 0.58 -0.4 955,036 + aoxA Synpcc7942_0946 0.60 -0.1 955,045 - aoxA Synpcc7942_0946 0.61 +0.7 955,076 - aoxA Synpcc7942_0946 0.63 -0.4 955,084 + aoxA Synpcc7942_0946 0.63 -0.3 955,094 + aoxA Synpcc7942_0946 0.64 +0.5 955,102 - aoxA Synpcc7942_0946 0.65 -2.2 955,111 + aoxA Synpcc7942_0946 0.65 +0.5 955,133 - aoxA Synpcc7942_0946 0.67 +0.6 955,152 + aoxA Synpcc7942_0946 0.68 -2.1 955,152 + aoxA Synpcc7942_0946 0.68 -1.3 955,152 + aoxA Synpcc7942_0946 0.68 -1.2 955,160 - aoxA Synpcc7942_0946 0.68 -2.1 955,160 - -1.6 955,161 + aoxA Synpcc7942_0946 0.69 -0.3 955,161 + aoxA Synpcc7942_0946 0.69 +0.2 955,169 - aoxA Synpcc7942_0946 0.69 +0.9 955,169 - aoxA Synpcc7942_0946 0.69 -0.2 955,169 - aoxA Synpcc7942_0946 0.69 -2.7 955,169 - aoxA Synpcc7942_0946 0.69 +0.7 955,181 - aoxA Synpcc7942_0946 0.70 -2.9 955,198 + aoxA Synpcc7942_0946 0.71 -0.2 955,203 + aoxA Synpcc7942_0946 0.71 -0.1 955,221 + aoxA Synpcc7942_0946 0.73 -0.3 955,221 + aoxA Synpcc7942_0946 0.73 +2.0 955,222 - aoxA Synpcc7942_0946 0.73 +0.2 955,238 - aoxA Synpcc7942_0946 0.74 -0.7 955,242 + aoxA Synpcc7942_0946 0.74 +0.8 955,249 - aoxA Synpcc7942_0946 0.74 +1.7 955,295 + aoxA Synpcc7942_0946 0.78 -3.6 955,295 + aoxA Synpcc7942_0946 0.78 +0.3 955,303 - aoxA Synpcc7942_0946 0.78 -0.4 955,303 - aoxA Synpcc7942_0946 0.78 +1.0 955,303 - aoxA Synpcc7942_0946 0.78 +1.5 955,303 - aoxA Synpcc7942_0946 0.78 +0.6 955,331 + aoxA Synpcc7942_0946 0.80 -2.8 955,339 - aoxA Synpcc7942_0946 0.81 +1.4 955,358 - aoxA Synpcc7942_0946 0.82 -3.3 955,362 - aoxA Synpcc7942_0946 0.82 -0.4 955,394 - aoxA Synpcc7942_0946 0.84 +0.9 955,408 - aoxA Synpcc7942_0946 0.85 +1.5 955,417 + aoxA Synpcc7942_0946 0.86 +1.3 955,417 + aoxA Synpcc7942_0946 0.86 +1.4 955,425 - aoxA Synpcc7942_0946 0.86 -1.1 955,428 + aoxA Synpcc7942_0946 0.86 -3.0 955,451 - aoxA Synpcc7942_0946 0.88 -1.9 955,477 + aoxA Synpcc7942_0946 0.90 -2.1 955,477 + aoxA Synpcc7942_0946 0.90 +1.5 955,508 + -1.5 955,545 + -0.5 955,553 - -0.5 955,553 - -0.5 955,554 - +0.8 955,578 + +0.7 955,583 + +0.7 955,591 - +1.2 955,591 - +1.2 955,591 - +1.0 955,591 - +1.0 955,632 - -0.5 955,637 - -1.2 955,639 + +2.5 955,645 + -0.2 955,707 + +0.9 955,707 + +1.1 955,715 - +0.3 955,715 - -3.8 955,720 + -2.0 955,727 + -2.9 955,727 + +1.5 955,728 - -0.9 955,760 - ggtA Synpcc7942_0947 0.11 -1.3 955,768 - ggtA Synpcc7942_0947 0.11 -0.1 955,768 - ggtA Synpcc7942_0947 0.11 -0.5 955,786 + ggtA Synpcc7942_0947 0.13 -2.3 955,794 - ggtA Synpcc7942_0947 0.14 -1.2 955,824 - ggtA Synpcc7942_0947 0.17 -0.1 955,843 + ggtA Synpcc7942_0947 0.18 -0.6 955,849 + ggtA Synpcc7942_0947 0.19 -2.6 955,858 - ggtA Synpcc7942_0947 0.20 +0.7 955,865 + ggtA Synpcc7942_0947 0.20 -2.5 955,890 + ggtA Synpcc7942_0947 0.23 -4.2 955,953 + ggtA Synpcc7942_0947 0.29 +0.1 955,956 - ggtA Synpcc7942_0947 0.29 +0.5 955,956 - ggtA Synpcc7942_0947 0.29 -0.5 955,961 - ggtA Synpcc7942_0947 0.29 -0.2 955,961 - ggtA Synpcc7942_0947 0.29 -2.8 955,961 - ggtA Synpcc7942_0947 0.29 -2.3 955,961 - ggtA Synpcc7942_0947 0.29 +0.2 955,999 - ggtA Synpcc7942_0947 0.33 -0.5 956,022 - ggtA Synpcc7942_0947 0.35 -0.2 956,080 + ggtA Synpcc7942_0947 0.41 -1.7 956,080 - ggtA Synpcc7942_0947 0.41 +1.3 956,090 + ggtA Synpcc7942_0947 0.41 +1.0 956,090 - ggtA Synpcc7942_0947 0.41 -2.1 956,104 + ggtA Synpcc7942_0947 0.43 -2.4 956,112 - ggtA Synpcc7942_0947 0.44 -2.1 956,127 + ggtA Synpcc7942_0947 0.45 -1.1 956,132 + ggtA Synpcc7942_0947 0.45 -0.3 956,135 - ggtA Synpcc7942_0947 0.46 -0.8 956,137 + ggtA Synpcc7942_0947 0.46 +0.7 956,137 + ggtA Synpcc7942_0947 0.46 -0.5 956,137 + ggtA Synpcc7942_0947 0.46 +0.7 956,145 - ggtA Synpcc7942_0947 0.47 +0.4 956,164 - ggtA Synpcc7942_0947 0.48 -0.2 956,171 + ggtA Synpcc7942_0947 0.49 -1.1 956,181 - ggtA Synpcc7942_0947 0.50 -1.5 956,284 + ggtA Synpcc7942_0947 0.60 -1.1 956,304 + ggtA Synpcc7942_0947 0.62 -2.7 956,304 + ggtA Synpcc7942_0947 0.62 -2.9 956,304 + ggtA Synpcc7942_0947 0.62 +1.3 956,304 + ggtA Synpcc7942_0947 0.62 +0.8 956,339 + ggtA Synpcc7942_0947 0.65 -1.0 956,347 - ggtA Synpcc7942_0947 0.66 -1.9 956,347 - ggtA Synpcc7942_0947 0.66 +0.1 956,438 + ggtA Synpcc7942_0947 0.74 +0.3 956,438 + ggtA Synpcc7942_0947 0.74 +0.3 956,443 + ggtA Synpcc7942_0947 0.75 -3.6 956,450 + ggtA Synpcc7942_0947 0.75 -2.7 956,458 - ggtA Synpcc7942_0947 0.76 +0.2 956,522 + ggtA Synpcc7942_0947 0.82 -2.6 956,565 + ggtA Synpcc7942_0947 0.86 -0.4 956,572 + ggtA Synpcc7942_0947 0.87 +0.3 956,572 + ggtA Synpcc7942_0947 0.87 +0.9 956,572 + ggtA Synpcc7942_0947 0.87 -1.1 956,572 + ggtA Synpcc7942_0947 0.87 -0.5 956,580 - ggtA Synpcc7942_0947 0.87 -0.4 956,580 - ggtA Synpcc7942_0947 0.87 -1.1 956,604 - ggtA Synpcc7942_0947 0.90 -2.5
Or see this region's nucleotide sequence