Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0786 and phoA are separated by 64 nucleotides phoA and gst1 are separated by 68 nucleotides gst1 and Synpcc7942_0789 are separated by 95 nucleotides
Synpcc7942_0786: Synpcc7942_0786 - hypothetical protein, at 782,076 to 782,942
_0786
Synpcc7942_0787: phoA - putative purple acid phosphatase, at 783,007 to 783,885
phoA
Synpcc7942_0788: gst1 - glutathione S-transferase, at 783,954 to 784,748
gst1
Synpcc7942_0789: Synpcc7942_0789 - hypothetical protein, at 784,844 to 785,167
_0789
Position (kb) 783
784 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.027 kb on - strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.041 kb on + strand at 782.044 kb on - strand at 782.049 kb on - strand at 782.059 kb on - strand at 782.084 kb on + strand at 782.094 kb on + strand at 782.094 kb on + strand at 782.112 kb on - strand at 782.112 kb on - strand at 782.140 kb on - strand at 782.166 kb on + strand, within Synpcc7942_0786 at 782.166 kb on + strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.174 kb on - strand, within Synpcc7942_0786 at 782.212 kb on + strand, within Synpcc7942_0786 at 782.217 kb on + strand, within Synpcc7942_0786 at 782.242 kb on - strand, within Synpcc7942_0786 at 782.244 kb on - strand, within Synpcc7942_0786 at 782.252 kb on - strand, within Synpcc7942_0786 at 782.256 kb on + strand, within Synpcc7942_0786 at 782.271 kb on + strand, within Synpcc7942_0786 at 782.298 kb on + strand, within Synpcc7942_0786 at 782.305 kb on + strand, within Synpcc7942_0786 at 782.311 kb on - strand, within Synpcc7942_0786 at 782.313 kb on - strand, within Synpcc7942_0786 at 782.333 kb on + strand, within Synpcc7942_0786 at 782.364 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.387 kb on - strand, within Synpcc7942_0786 at 782.406 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.433 kb on - strand, within Synpcc7942_0786 at 782.434 kb on + strand, within Synpcc7942_0786 at 782.602 kb on - strand, within Synpcc7942_0786 at 782.605 kb on + strand, within Synpcc7942_0786 at 782.618 kb on + strand, within Synpcc7942_0786 at 782.706 kb on + strand, within Synpcc7942_0786 at 782.792 kb on + strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.800 kb on - strand, within Synpcc7942_0786 at 782.813 kb on + strand, within Synpcc7942_0786 at 782.837 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.852 kb on + strand, within Synpcc7942_0786 at 782.941 kb on + strand at 782.979 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 782.997 kb on + strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.005 kb on - strand at 783.022 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.042 kb on + strand at 783.078 kb on - strand at 783.082 kb on - strand at 783.091 kb on + strand at 783.097 kb on - strand, within phoA at 783.105 kb on - strand, within phoA at 783.134 kb on - strand, within phoA at 783.162 kb on + strand, within phoA at 783.178 kb on + strand, within phoA at 783.227 kb on + strand, within phoA at 783.267 kb on - strand, within phoA at 783.285 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.306 kb on + strand, within phoA at 783.308 kb on + strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.314 kb on - strand, within phoA at 783.315 kb on - strand, within phoA at 783.324 kb on + strand, within phoA at 783.349 kb on + strand at 783.357 kb on - strand, within phoA at 783.357 kb on - strand, within phoA at 783.388 kb on + strand, within phoA at 783.419 kb on - strand, within phoA at 783.428 kb on + strand at 783.466 kb on - strand, within phoA at 783.504 kb on + strand, within phoA at 783.523 kb on + strand at 783.523 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.533 kb on + strand, within phoA at 783.573 kb on - strand, within phoA at 783.607 kb on - strand, within phoA at 783.630 kb on + strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.638 kb on - strand, within phoA at 783.644 kb on + strand, within phoA at 783.644 kb on - strand, within phoA at 783.644 kb on - strand, within phoA at 783.652 kb on - strand, within phoA at 783.660 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.685 kb on - strand, within phoA at 783.709 kb on + strand, within phoA at 783.759 kb on + strand at 783.759 kb on + strand, within phoA at 783.767 kb on - strand, within phoA at 783.767 kb on - strand, within phoA at 783.777 kb on - strand at 783.784 kb on + strand, within phoA at 783.789 kb on + strand, within phoA at 783.792 kb on - strand, within phoA at 783.808 kb on + strand at 783.810 kb on + strand at 783.816 kb on - strand at 783.841 kb on + strand at 783.865 kb on - strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.885 kb on + strand at 783.893 kb on - strand at 783.893 kb on - strand at 783.926 kb on - strand at 783.954 kb on - strand at 783.959 kb on - strand at 784.046 kb on + strand, within gst1 at 784.065 kb on - strand, within gst1 at 784.069 kb on + strand, within gst1 at 784.135 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.148 kb on + strand, within gst1 at 784.156 kb on - strand, within gst1 at 784.170 kb on + strand, within gst1 at 784.209 kb on + strand, within gst1 at 784.231 kb on - strand, within gst1 at 784.250 kb on + strand, within gst1 at 784.255 kb on + strand, within gst1 at 784.270 kb on + strand, within gst1 at 784.326 kb on + strand, within gst1 at 784.331 kb on + strand, within gst1 at 784.334 kb on - strand, within gst1 at 784.419 kb on + strand, within gst1 at 784.432 kb on - strand, within gst1 at 784.501 kb on - strand, within gst1 at 784.541 kb on + strand, within gst1 at 784.574 kb on - strand, within gst1 at 784.627 kb on - strand, within gst1 at 784.661 kb on - strand, within gst1 at 784.758 kb on + strand at 784.776 kb on - strand at 784.800 kb on - strand at 784.801 kb on + strand at 784.807 kb on + strand at 784.843 kb on - strand at 784.847 kb on - strand at 784.866 kb on - strand at 784.866 kb on - strand at 784.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 782,027 - -1.8 782,027 - -2.2 782,027 - +1.7 782,027 - -1.4 782,036 + +1.9 782,036 + -0.0 782,041 + -0.2 782,041 + -0.0 782,041 + -1.2 782,044 - -0.8 782,049 - -1.8 782,059 - +2.3 782,084 + -0.1 782,094 + +0.7 782,094 + +0.6 782,112 - +1.1 782,112 - +0.2 782,140 - -2.4 782,166 + Synpcc7942_0786 0.10 -1.6 782,166 + Synpcc7942_0786 0.10 -1.5 782,174 - Synpcc7942_0786 0.11 +1.1 782,174 - Synpcc7942_0786 0.11 -0.5 782,212 + Synpcc7942_0786 0.16 +1.3 782,217 + Synpcc7942_0786 0.16 +0.9 782,242 - Synpcc7942_0786 0.19 -0.5 782,244 - Synpcc7942_0786 0.19 -2.1 782,252 - Synpcc7942_0786 0.20 +0.8 782,256 + Synpcc7942_0786 0.21 +0.5 782,271 + Synpcc7942_0786 0.22 -0.5 782,298 + Synpcc7942_0786 0.26 -1.6 782,305 + Synpcc7942_0786 0.26 -2.0 782,311 - Synpcc7942_0786 0.27 -1.9 782,313 - Synpcc7942_0786 0.27 +0.2 782,333 + Synpcc7942_0786 0.30 -0.1 782,364 - Synpcc7942_0786 0.33 -4.1 782,387 - Synpcc7942_0786 0.36 -1.8 782,387 - Synpcc7942_0786 0.36 -2.9 782,406 - Synpcc7942_0786 0.38 +0.5 782,433 - Synpcc7942_0786 0.41 +0.7 782,433 - Synpcc7942_0786 0.41 +1.3 782,433 - Synpcc7942_0786 0.41 +0.6 782,434 + Synpcc7942_0786 0.41 +2.2 782,602 - Synpcc7942_0786 0.61 -0.2 782,605 + Synpcc7942_0786 0.61 +0.9 782,618 + Synpcc7942_0786 0.63 -0.7 782,706 + Synpcc7942_0786 0.73 -3.0 782,792 + Synpcc7942_0786 0.83 +0.4 782,800 - Synpcc7942_0786 0.84 +0.4 782,800 - Synpcc7942_0786 0.84 +0.1 782,813 + Synpcc7942_0786 0.85 -4.8 782,837 + Synpcc7942_0786 0.88 -2.1 782,852 + Synpcc7942_0786 0.90 +1.0 782,852 + Synpcc7942_0786 0.90 +1.9 782,941 + +0.4 782,979 + -1.6 782,997 + +1.4 782,997 + -0.3 782,997 + -0.1 782,997 + +1.5 783,005 - +0.5 783,005 - +0.9 783,005 - +1.4 783,005 - -0.8 783,022 + +0.6 783,042 + +2.0 783,042 + +0.7 783,042 + -0.3 783,078 - +3.9 783,082 - +3.2 783,091 + -0.1 783,097 - phoA Synpcc7942_0787 0.10 +4.3 783,105 - phoA Synpcc7942_0787 0.11 +6.3 783,134 - phoA Synpcc7942_0787 0.14 +4.1 783,162 + phoA Synpcc7942_0787 0.18 +0.6 783,178 + phoA Synpcc7942_0787 0.19 +3.1 783,227 + phoA Synpcc7942_0787 0.25 -0.8 783,267 - phoA Synpcc7942_0787 0.30 +3.2 783,285 + phoA Synpcc7942_0787 0.32 -0.4 783,306 + phoA Synpcc7942_0787 0.34 +3.4 783,306 + phoA Synpcc7942_0787 0.34 +1.4 783,306 + phoA Synpcc7942_0787 0.34 +2.7 783,306 + phoA Synpcc7942_0787 0.34 -1.4 783,306 + phoA Synpcc7942_0787 0.34 +2.9 783,306 + phoA Synpcc7942_0787 0.34 +1.1 783,306 + phoA Synpcc7942_0787 0.34 +0.6 783,306 + phoA Synpcc7942_0787 0.34 +1.9 783,306 + phoA Synpcc7942_0787 0.34 -0.3 783,306 + phoA Synpcc7942_0787 0.34 +3.3 783,306 + phoA Synpcc7942_0787 0.34 -1.0 783,306 + phoA Synpcc7942_0787 0.34 +3.6 783,308 + phoA Synpcc7942_0787 0.34 +1.2 783,314 - phoA Synpcc7942_0787 0.35 +5.0 783,314 - phoA Synpcc7942_0787 0.35 -0.7 783,314 - phoA Synpcc7942_0787 0.35 +3.3 783,314 - phoA Synpcc7942_0787 0.35 +3.6 783,314 - phoA Synpcc7942_0787 0.35 +3.4 783,314 - phoA Synpcc7942_0787 0.35 +0.6 783,314 - phoA Synpcc7942_0787 0.35 +0.4 783,314 - phoA Synpcc7942_0787 0.35 +3.8 783,315 - phoA Synpcc7942_0787 0.35 +3.1 783,324 + phoA Synpcc7942_0787 0.36 -0.8 783,349 + -0.3 783,357 - phoA Synpcc7942_0787 0.40 +2.9 783,357 - phoA Synpcc7942_0787 0.40 +3.7 783,388 + phoA Synpcc7942_0787 0.43 +2.2 783,419 - phoA Synpcc7942_0787 0.47 +3.2 783,428 + +0.5 783,466 - phoA Synpcc7942_0787 0.52 +2.1 783,504 + phoA Synpcc7942_0787 0.57 +3.7 783,523 + +2.9 783,523 + phoA Synpcc7942_0787 0.59 +2.7 783,533 + phoA Synpcc7942_0787 0.60 +2.9 783,533 + phoA Synpcc7942_0787 0.60 +3.7 783,573 - phoA Synpcc7942_0787 0.64 +1.3 783,607 - phoA Synpcc7942_0787 0.68 +0.3 783,630 + phoA Synpcc7942_0787 0.71 -0.1 783,638 - phoA Synpcc7942_0787 0.72 +0.2 783,638 - phoA Synpcc7942_0787 0.72 +4.4 783,638 - phoA Synpcc7942_0787 0.72 +3.1 783,644 + phoA Synpcc7942_0787 0.72 +2.8 783,644 - phoA Synpcc7942_0787 0.72 +2.9 783,644 - phoA Synpcc7942_0787 0.72 -0.0 783,652 - phoA Synpcc7942_0787 0.73 +2.4 783,660 - phoA Synpcc7942_0787 0.74 -0.5 783,685 - phoA Synpcc7942_0787 0.77 +3.4 783,685 - phoA Synpcc7942_0787 0.77 +2.1 783,709 + phoA Synpcc7942_0787 0.80 +4.1 783,759 + +1.2 783,759 + phoA Synpcc7942_0787 0.86 +0.4 783,767 - phoA Synpcc7942_0787 0.86 +2.7 783,767 - phoA Synpcc7942_0787 0.86 +3.7 783,777 - +0.9 783,784 + phoA Synpcc7942_0787 0.88 +3.4 783,789 + phoA Synpcc7942_0787 0.89 +2.6 783,792 - phoA Synpcc7942_0787 0.89 -1.3 783,808 + +3.3 783,810 + -1.3 783,816 - +0.6 783,841 + +3.9 783,865 - -1.8 783,885 + +1.7 783,885 + +2.3 783,885 + -0.2 783,885 + +2.9 783,893 - -0.4 783,893 - +0.0 783,926 - -2.6 783,954 - -0.8 783,959 - +1.8 784,046 + gst1 Synpcc7942_0788 0.12 -2.6 784,065 - gst1 Synpcc7942_0788 0.14 +2.0 784,069 + gst1 Synpcc7942_0788 0.14 -0.3 784,135 + gst1 Synpcc7942_0788 0.23 +1.0 784,148 + gst1 Synpcc7942_0788 0.24 +0.1 784,148 + gst1 Synpcc7942_0788 0.24 -2.0 784,156 - gst1 Synpcc7942_0788 0.25 -0.3 784,170 + gst1 Synpcc7942_0788 0.27 -1.3 784,209 + gst1 Synpcc7942_0788 0.32 -1.6 784,231 - gst1 Synpcc7942_0788 0.35 +0.8 784,250 + gst1 Synpcc7942_0788 0.37 +0.3 784,255 + gst1 Synpcc7942_0788 0.38 -1.1 784,270 + gst1 Synpcc7942_0788 0.40 +1.2 784,326 + gst1 Synpcc7942_0788 0.47 -2.1 784,331 + gst1 Synpcc7942_0788 0.47 +0.4 784,334 - gst1 Synpcc7942_0788 0.48 +0.3 784,419 + gst1 Synpcc7942_0788 0.58 -0.0 784,432 - gst1 Synpcc7942_0788 0.60 +1.2 784,501 - gst1 Synpcc7942_0788 0.69 +2.3 784,541 + gst1 Synpcc7942_0788 0.74 +1.9 784,574 - gst1 Synpcc7942_0788 0.78 +1.8 784,627 - gst1 Synpcc7942_0788 0.85 +1.6 784,661 - gst1 Synpcc7942_0788 0.89 +1.1 784,758 + +1.5 784,776 - -1.5 784,800 - -0.5 784,801 + -0.2 784,807 + +0.1 784,843 - +1.3 784,847 - +0.6 784,866 - +0.9 784,866 - +1.1 784,875 + +0.6
Or see this region's nucleotide sequence