Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0481 and Synpcc7942_0482 are separated by 175 nucleotides Synpcc7942_0482 and Synpcc7942_0483 are separated by 2 nucleotides Synpcc7942_0483 and Synpcc7942_0484 are separated by 212 nucleotides
Synpcc7942_0481: Synpcc7942_0481 - protease, at 465,713 to 466,828
_0481
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Synpcc7942_0483: Synpcc7942_0483 - hypothetical protein, at 468,776 to 469,219
_0483
Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874
_0484
Position (kb) 467
468
469 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 466.004 kb on - strand, within Synpcc7942_0481 at 466.043 kb on + strand, within Synpcc7942_0481 at 466.086 kb on - strand, within Synpcc7942_0481 at 466.147 kb on - strand, within Synpcc7942_0481 at 466.177 kb on - strand, within Synpcc7942_0481 at 466.217 kb on + strand, within Synpcc7942_0481 at 466.225 kb on - strand, within Synpcc7942_0481 at 466.228 kb on + strand, within Synpcc7942_0481 at 466.277 kb on - strand, within Synpcc7942_0481 at 466.282 kb on - strand, within Synpcc7942_0481 at 466.305 kb on - strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.341 kb on - strand, within Synpcc7942_0481 at 466.436 kb on + strand, within Synpcc7942_0481 at 466.626 kb on + strand, within Synpcc7942_0481 at 466.634 kb on - strand, within Synpcc7942_0481 at 466.637 kb on + strand, within Synpcc7942_0481 at 466.645 kb on - strand, within Synpcc7942_0481 at 466.715 kb on - strand, within Synpcc7942_0481 at 466.731 kb on - strand at 466.756 kb on + strand at 466.809 kb on + strand at 466.847 kb on - strand at 466.887 kb on - strand at 466.892 kb on - strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.915 kb on - strand at 466.922 kb on - strand at 466.930 kb on - strand at 466.967 kb on - strand at 467.001 kb on + strand at 467.015 kb on - strand at 467.015 kb on - strand at 468.704 kb on + strand at 468.748 kb on + strand at 468.756 kb on - strand at 469.134 kb on + strand, within Synpcc7942_0483 at 469.161 kb on + strand, within Synpcc7942_0483 at 469.237 kb on + strand at 469.346 kb on + strand at 469.419 kb on + strand at 469.419 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.424 kb on + strand at 469.427 kb on - strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on + strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.437 kb on - strand at 469.452 kb on - strand at 469.452 kb on - strand at 469.459 kb on + strand at 469.459 kb on + strand at 469.531 kb on - strand at 469.600 kb on + strand, within Synpcc7942_0484 at 469.657 kb on - strand, within Synpcc7942_0484 at 469.721 kb on + strand, within Synpcc7942_0484
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 466,004 - Synpcc7942_0481 0.26 +1.6 466,043 + Synpcc7942_0481 0.30 -1.6 466,086 - Synpcc7942_0481 0.33 -2.8 466,147 - Synpcc7942_0481 0.39 -2.6 466,177 - Synpcc7942_0481 0.42 -1.6 466,217 + Synpcc7942_0481 0.45 -0.6 466,225 - Synpcc7942_0481 0.46 -0.3 466,228 + Synpcc7942_0481 0.46 -1.5 466,277 - Synpcc7942_0481 0.51 +1.0 466,282 - Synpcc7942_0481 0.51 -0.4 466,305 - Synpcc7942_0481 0.53 -0.2 466,318 + Synpcc7942_0481 0.54 -0.1 466,318 + Synpcc7942_0481 0.54 -4.5 466,341 - Synpcc7942_0481 0.56 +0.3 466,436 + Synpcc7942_0481 0.65 +0.1 466,626 + Synpcc7942_0481 0.82 -1.4 466,634 - Synpcc7942_0481 0.83 +0.8 466,637 + Synpcc7942_0481 0.83 -0.6 466,645 - Synpcc7942_0481 0.84 +1.0 466,715 - Synpcc7942_0481 0.90 +0.6 466,731 - -0.8 466,756 + +0.1 466,809 + -2.8 466,847 - -2.3 466,887 - +1.4 466,892 - +1.5 466,909 + -1.6 466,909 + -2.2 466,915 - +1.9 466,922 - +2.1 466,930 - +0.9 466,967 - +1.2 467,001 + -3.4 467,015 - +2.4 467,015 - -1.7 468,704 + +4.9 468,748 + +1.2 468,756 - +5.0 469,134 + Synpcc7942_0483 0.81 +0.8 469,161 + Synpcc7942_0483 0.87 +4.0 469,237 + -2.4 469,346 + +1.6 469,419 + -0.9 469,419 + +0.6 469,424 + +0.1 469,424 + +1.4 469,424 + +1.8 469,427 - +0.9 469,429 + -1.4 469,429 + +1.6 469,429 + +2.7 469,429 + -3.3 469,429 + -2.6 469,429 + -1.8 469,429 + -2.6 469,429 + +1.6 469,429 + +0.3 469,430 + -2.0 469,437 - +1.1 469,437 - -1.9 469,437 - +2.2 469,452 - -1.4 469,452 - -0.1 469,459 + -2.0 469,459 + -2.8 469,531 - -2.2 469,600 + Synpcc7942_0484 0.12 -2.4 469,657 - Synpcc7942_0484 0.16 -3.2 469,721 + Synpcc7942_0484 0.20 -0.2
Or see this region's nucleotide sequence