Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0431

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdxs and Synpcc7942_0431 overlap by 4 nucleotidesSynpcc7942_0431 and Synpcc7942_0432 overlap by 11 nucleotides Synpcc7942_0430: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 419,382 to 421,292 dxs Synpcc7942_0431: Synpcc7942_0431 - hypothetical protein, at 421,289 to 422,557 _0431 Synpcc7942_0432: Synpcc7942_0432 - D-alanyl-D-alanine dipeptidase-like, at 422,547 to 423,245 _0432 Position (kb) 421 422 423Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 421.294 kb on - strandat 421.294 kb on - strandat 421.294 kb on - strandat 421.331 kb on - strandat 421.363 kb on + strandat 421.417 kb on + strandat 421.417 kb on + strand, within Synpcc7942_0431at 421.417 kb on + strand, within Synpcc7942_0431at 421.417 kb on + strand, within Synpcc7942_0431at 421.417 kb on + strand, within Synpcc7942_0431at 421.417 kb on + strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.425 kb on - strand, within Synpcc7942_0431at 421.431 kb on - strand, within Synpcc7942_0431at 421.431 kb on - strandat 421.433 kb on + strand, within Synpcc7942_0431at 421.441 kb on - strand, within Synpcc7942_0431at 421.441 kb on - strand, within Synpcc7942_0431at 421.452 kb on + strand, within Synpcc7942_0431at 421.453 kb on + strand, within Synpcc7942_0431at 421.462 kb on - strand, within Synpcc7942_0431at 421.484 kb on + strand, within Synpcc7942_0431at 421.522 kb on + strand, within Synpcc7942_0431at 421.522 kb on + strand, within Synpcc7942_0431at 421.530 kb on - strand, within Synpcc7942_0431at 421.591 kb on - strand, within Synpcc7942_0431at 421.591 kb on - strand, within Synpcc7942_0431at 421.654 kb on + strand, within Synpcc7942_0431at 421.654 kb on - strand, within Synpcc7942_0431at 421.664 kb on + strand, within Synpcc7942_0431at 421.718 kb on + strand, within Synpcc7942_0431at 421.719 kb on + strand, within Synpcc7942_0431at 421.733 kb on - strand, within Synpcc7942_0431at 421.733 kb on - strand, within Synpcc7942_0431at 421.789 kb on + strand, within Synpcc7942_0431at 421.789 kb on + strand, within Synpcc7942_0431at 421.795 kb on - strand, within Synpcc7942_0431at 421.797 kb on - strand, within Synpcc7942_0431at 421.797 kb on - strand, within Synpcc7942_0431at 421.797 kb on - strand, within Synpcc7942_0431at 421.797 kb on - strand, within Synpcc7942_0431at 421.830 kb on - strand, within Synpcc7942_0431at 421.866 kb on + strand, within Synpcc7942_0431at 421.866 kb on - strand, within Synpcc7942_0431at 421.866 kb on - strand, within Synpcc7942_0431at 421.876 kb on - strand, within Synpcc7942_0431at 421.876 kb on - strand, within Synpcc7942_0431at 421.896 kb on + strand, within Synpcc7942_0431at 421.897 kb on + strand, within Synpcc7942_0431at 421.897 kb on + strand, within Synpcc7942_0431at 421.921 kb on + strand, within Synpcc7942_0431at 421.921 kb on + strand, within Synpcc7942_0431at 421.930 kb on - strand, within Synpcc7942_0431at 421.962 kb on + strand, within Synpcc7942_0431at 421.963 kb on + strand, within Synpcc7942_0431at 421.963 kb on + strand, within Synpcc7942_0431at 421.963 kb on + strand, within Synpcc7942_0431at 421.963 kb on + strand, within Synpcc7942_0431at 421.970 kb on - strand, within Synpcc7942_0431at 421.970 kb on - strand, within Synpcc7942_0431at 421.970 kb on - strand, within Synpcc7942_0431at 421.971 kb on - strand, within Synpcc7942_0431at 421.977 kb on - strand, within Synpcc7942_0431at 422.005 kb on + strand, within Synpcc7942_0431at 422.024 kb on + strand, within Synpcc7942_0431at 422.054 kb on + strand, within Synpcc7942_0431at 422.070 kb on - strand, within Synpcc7942_0431at 422.075 kb on - strand, within Synpcc7942_0431at 422.090 kb on + strand, within Synpcc7942_0431at 422.098 kb on - strand, within Synpcc7942_0431at 422.111 kb on - strand, within Synpcc7942_0431at 422.150 kb on + strand, within Synpcc7942_0431at 422.203 kb on - strand, within Synpcc7942_0431at 422.213 kb on + strand, within Synpcc7942_0431at 422.233 kb on - strand, within Synpcc7942_0431at 422.237 kb on + strand, within Synpcc7942_0431at 422.245 kb on - strand, within Synpcc7942_0431at 422.252 kb on + strand, within Synpcc7942_0431at 422.258 kb on - strand, within Synpcc7942_0431at 422.270 kb on + strand, within Synpcc7942_0431at 422.281 kb on + strand, within Synpcc7942_0431at 422.286 kb on + strand, within Synpcc7942_0431at 422.294 kb on + strand, within Synpcc7942_0431at 422.320 kb on + strand, within Synpcc7942_0431at 422.328 kb on - strand, within Synpcc7942_0431at 422.328 kb on - strand, within Synpcc7942_0431at 422.328 kb on - strand, within Synpcc7942_0431at 422.330 kb on + strand, within Synpcc7942_0431at 422.330 kb on + strand, within Synpcc7942_0431at 422.332 kb on + strand, within Synpcc7942_0431at 422.338 kb on - strand, within Synpcc7942_0431at 422.342 kb on - strand, within Synpcc7942_0431at 422.346 kb on - strand, within Synpcc7942_0431at 422.358 kb on - strand, within Synpcc7942_0431at 422.408 kb on + strand, within Synpcc7942_0431at 422.408 kb on + strand, within Synpcc7942_0431at 422.408 kb on - strand, within Synpcc7942_0431at 422.409 kb on - strand, within Synpcc7942_0431at 422.411 kb on - strand, within Synpcc7942_0431at 422.413 kb on + strand, within Synpcc7942_0431at 422.413 kb on + strand, within Synpcc7942_0431at 422.421 kb on - strand, within Synpcc7942_0431at 422.472 kb on + strandat 422.490 kb on - strandat 422.538 kb on + strandat 422.637 kb on + strand, within Synpcc7942_0432at 422.642 kb on + strand, within Synpcc7942_0432at 422.642 kb on + strand, within Synpcc7942_0432at 422.642 kb on + strand, within Synpcc7942_0432at 422.650 kb on - strand, within Synpcc7942_0432at 422.650 kb on - strand, within Synpcc7942_0432at 422.652 kb on + strand, within Synpcc7942_0432at 422.655 kb on - strand, within Synpcc7942_0432at 422.667 kb on - strand, within Synpcc7942_0432at 422.683 kb on + strand, within Synpcc7942_0432at 422.691 kb on - strand, within Synpcc7942_0432at 422.698 kb on + strand, within Synpcc7942_0432at 422.711 kb on - strand, within Synpcc7942_0432at 422.744 kb on + strand, within Synpcc7942_0432at 422.752 kb on - strand, within Synpcc7942_0432at 422.752 kb on - strand, within Synpcc7942_0432at 422.752 kb on - strand, within Synpcc7942_0432at 422.757 kb on - strand, within Synpcc7942_0432at 422.813 kb on + strand, within Synpcc7942_0432at 422.818 kb on + strand, within Synpcc7942_0432at 422.841 kb on + strand, within Synpcc7942_0432at 422.841 kb on + strand, within Synpcc7942_0432at 422.871 kb on - strand, within Synpcc7942_0432at 422.878 kb on + strand, within Synpcc7942_0432at 422.886 kb on - strand, within Synpcc7942_0432at 422.886 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strand, within Synpcc7942_0432at 422.908 kb on - strandat 422.931 kb on + strand, within Synpcc7942_0432at 422.992 kb on - strand, within Synpcc7942_0432at 423.003 kb on + strand, within Synpcc7942_0432at 423.008 kb on + strand, within Synpcc7942_0432at 423.044 kb on + strand, within Synpcc7942_0432at 423.044 kb on + strand, within Synpcc7942_0432at 423.044 kb on + strand, within Synpcc7942_0432at 423.083 kb on - strand, within Synpcc7942_0432at 423.083 kb on - strand, within Synpcc7942_0432at 423.110 kb on + strand, within Synpcc7942_0432at 423.110 kb on + strand, within Synpcc7942_0432at 423.113 kb on + strand, within Synpcc7942_0432at 423.118 kb on - strand, within Synpcc7942_0432at 423.126 kb on - strand, within Synpcc7942_0432at 423.176 kb on + strandat 423.176 kb on + strandat 423.176 kb on + strandat 423.182 kb on + strandat 423.184 kb on - strandat 423.184 kb on - strandat 423.184 kb on - strandat 423.193 kb on + strandat 423.228 kb on + strandat 423.228 kb on + strandat 423.228 kb on + strandat 423.236 kb on - strandat 423.240 kb on + strandat 423.248 kb on - strandat 423.250 kb on + strandat 423.300 kb on + strandat 423.380 kb on + strandat 423.392 kb on + strandat 423.397 kb on + strandat 423.397 kb on + strandat 423.397 kb on + strandat 423.402 kb on + strandat 423.402 kb on + strandat 423.402 kb on + strandat 423.402 kb on + strandat 423.405 kb on - strandat 423.407 kb on - strandat 423.409 kb on + strandat 423.409 kb on + strandat 423.410 kb on - strandat 423.411 kb on + strandat 423.411 kb on + strandat 423.419 kb on - strandat 423.419 kb on - strandat 423.451 kb on + strandat 423.503 kb on + strandat 423.503 kb on + strandat 423.511 kb on - strandat 423.511 kb on - strandat 423.545 kb on + strandat 423.545 kb on + strandat 423.553 kb on - strandat 423.553 kb on - strandat 423.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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421,294 - -3.2
421,294 - +0.2
421,294 - +0.2
421,331 - -2.4
421,363 + -1.8
421,417 + -1.8
421,417 + Synpcc7942_0431 0.10 -0.8
421,417 + Synpcc7942_0431 0.10 -2.3
421,417 + Synpcc7942_0431 0.10 -1.0
421,417 + Synpcc7942_0431 0.10 -3.3
421,417 + Synpcc7942_0431 0.10 -2.9
421,425 - Synpcc7942_0431 0.11 -0.1
421,425 - Synpcc7942_0431 0.11 -4.2
421,425 - Synpcc7942_0431 0.11 -3.3
421,425 - Synpcc7942_0431 0.11 +0.0
421,425 - Synpcc7942_0431 0.11 -2.1
421,425 - Synpcc7942_0431 0.11 -5.2
421,431 - Synpcc7942_0431 0.11 -0.2
421,431 - -1.8
421,433 + Synpcc7942_0431 0.11 -0.4
421,441 - Synpcc7942_0431 0.12 -1.0
421,441 - Synpcc7942_0431 0.12 -2.1
421,452 + Synpcc7942_0431 0.13 -0.9
421,453 + Synpcc7942_0431 0.13 -4.0
421,462 - Synpcc7942_0431 0.14 +1.2
421,484 + Synpcc7942_0431 0.15 -3.3
421,522 + Synpcc7942_0431 0.18 -2.9
421,522 + Synpcc7942_0431 0.18 -0.2
421,530 - Synpcc7942_0431 0.19 +0.7
421,591 - Synpcc7942_0431 0.24 -2.0
421,591 - Synpcc7942_0431 0.24 -0.3
421,654 + Synpcc7942_0431 0.29 -1.8
421,654 - Synpcc7942_0431 0.29 -1.3
421,664 + Synpcc7942_0431 0.30 -1.2
421,718 + Synpcc7942_0431 0.34 -1.9
421,719 + Synpcc7942_0431 0.34 -0.1
421,733 - Synpcc7942_0431 0.35 -0.8
421,733 - Synpcc7942_0431 0.35 -0.0
421,789 + Synpcc7942_0431 0.39 -0.6
421,789 + Synpcc7942_0431 0.39 -2.2
421,795 - Synpcc7942_0431 0.40 -0.7
421,797 - Synpcc7942_0431 0.40 -3.7
421,797 - Synpcc7942_0431 0.40 -1.6
421,797 - Synpcc7942_0431 0.40 -0.6
421,797 - Synpcc7942_0431 0.40 -5.5
421,830 - Synpcc7942_0431 0.43 -0.7
421,866 + Synpcc7942_0431 0.45 -0.4
421,866 - Synpcc7942_0431 0.45 -2.4
421,866 - Synpcc7942_0431 0.45 -2.7
421,876 - Synpcc7942_0431 0.46 +0.8
421,876 - Synpcc7942_0431 0.46 -0.8
421,896 + Synpcc7942_0431 0.48 -6.0
421,897 + Synpcc7942_0431 0.48 -1.5
421,897 + Synpcc7942_0431 0.48 -1.0
421,921 + Synpcc7942_0431 0.50 -3.0
421,921 + Synpcc7942_0431 0.50 -0.6
421,930 - Synpcc7942_0431 0.51 +0.9
421,962 + Synpcc7942_0431 0.53 -4.0
421,963 + Synpcc7942_0431 0.53 +1.0
421,963 + Synpcc7942_0431 0.53 -0.0
421,963 + Synpcc7942_0431 0.53 -4.4
421,963 + Synpcc7942_0431 0.53 -0.6
421,970 - Synpcc7942_0431 0.54 -4.6
421,970 - Synpcc7942_0431 0.54 -2.4
421,970 - Synpcc7942_0431 0.54 -6.5
421,971 - Synpcc7942_0431 0.54 +0.4
421,977 - Synpcc7942_0431 0.54 -1.0
422,005 + Synpcc7942_0431 0.56 -1.5
422,024 + Synpcc7942_0431 0.58 -2.5
422,054 + Synpcc7942_0431 0.60 -1.9
422,070 - Synpcc7942_0431 0.62 -2.1
422,075 - Synpcc7942_0431 0.62 -0.5
422,090 + Synpcc7942_0431 0.63 -0.4
422,098 - Synpcc7942_0431 0.64 -2.8
422,111 - Synpcc7942_0431 0.65 -1.2
422,150 + Synpcc7942_0431 0.68 -3.2
422,203 - Synpcc7942_0431 0.72 -2.9
422,213 + Synpcc7942_0431 0.73 -1.2
422,233 - Synpcc7942_0431 0.74 -0.0
422,237 + Synpcc7942_0431 0.75 -3.9
422,245 - Synpcc7942_0431 0.75 -1.9
422,252 + Synpcc7942_0431 0.76 -2.1
422,258 - Synpcc7942_0431 0.76 -0.8
422,270 + Synpcc7942_0431 0.77 -2.3
422,281 + Synpcc7942_0431 0.78 -0.8
422,286 + Synpcc7942_0431 0.79 -0.3
422,294 + Synpcc7942_0431 0.79 -2.3
422,320 + Synpcc7942_0431 0.81 -2.8
422,328 - Synpcc7942_0431 0.82 -1.3
422,328 - Synpcc7942_0431 0.82 -1.2
422,328 - Synpcc7942_0431 0.82 -4.8
422,330 + Synpcc7942_0431 0.82 -0.9
422,330 + Synpcc7942_0431 0.82 +0.4
422,332 + Synpcc7942_0431 0.82 -2.5
422,338 - Synpcc7942_0431 0.83 -1.4
422,342 - Synpcc7942_0431 0.83 -1.5
422,346 - Synpcc7942_0431 0.83 +1.7
422,358 - Synpcc7942_0431 0.84 -2.1
422,408 + Synpcc7942_0431 0.88 +0.6
422,408 + Synpcc7942_0431 0.88 -1.5
422,408 - Synpcc7942_0431 0.88 -1.3
422,409 - Synpcc7942_0431 0.88 -0.9
422,411 - Synpcc7942_0431 0.88 -2.2
422,413 + Synpcc7942_0431 0.89 -0.9
422,413 + Synpcc7942_0431 0.89 -2.2
422,421 - Synpcc7942_0431 0.89 -1.4
422,472 + -3.4
422,490 - -1.6
422,538 + +0.2
422,637 + Synpcc7942_0432 0.13 +0.2
422,642 + Synpcc7942_0432 0.14 +0.1
422,642 + Synpcc7942_0432 0.14 -1.5
422,642 + Synpcc7942_0432 0.14 -0.4
422,650 - Synpcc7942_0432 0.15 -0.8
422,650 - Synpcc7942_0432 0.15 -1.8
422,652 + Synpcc7942_0432 0.15 -3.4
422,655 - Synpcc7942_0432 0.15 -0.9
422,667 - Synpcc7942_0432 0.17 -0.9
422,683 + Synpcc7942_0432 0.19 -2.1
422,691 - Synpcc7942_0432 0.21 -2.2
422,698 + Synpcc7942_0432 0.22 +0.8
422,711 - Synpcc7942_0432 0.23 -1.3
422,744 + Synpcc7942_0432 0.28 -1.3
422,752 - Synpcc7942_0432 0.29 -0.9
422,752 - Synpcc7942_0432 0.29 -1.8
422,752 - Synpcc7942_0432 0.29 -3.5
422,757 - Synpcc7942_0432 0.30 -1.4
422,813 + Synpcc7942_0432 0.38 -2.0
422,818 + Synpcc7942_0432 0.39 -3.4
422,841 + Synpcc7942_0432 0.42 -1.0
422,841 + Synpcc7942_0432 0.42 -1.2
422,871 - Synpcc7942_0432 0.46 -0.9
422,878 + Synpcc7942_0432 0.47 -2.6
422,886 - Synpcc7942_0432 0.48 -2.1
422,886 - Synpcc7942_0432 0.48 -4.5
422,908 - Synpcc7942_0432 0.52 -2.8
422,908 - Synpcc7942_0432 0.52 -0.9
422,908 - Synpcc7942_0432 0.52 -2.3
422,908 - Synpcc7942_0432 0.52 -1.6
422,908 - Synpcc7942_0432 0.52 -1.9
422,908 - Synpcc7942_0432 0.52 -3.0
422,908 - -0.5
422,931 + Synpcc7942_0432 0.55 -0.4
422,992 - Synpcc7942_0432 0.64 -3.2
423,003 + Synpcc7942_0432 0.65 -4.8
423,008 + Synpcc7942_0432 0.66 -0.1
423,044 + Synpcc7942_0432 0.71 -0.9
423,044 + Synpcc7942_0432 0.71 -0.2
423,044 + Synpcc7942_0432 0.71 -2.0
423,083 - Synpcc7942_0432 0.77 -0.6
423,083 - Synpcc7942_0432 0.77 -2.8
423,110 + Synpcc7942_0432 0.81 -2.0
423,110 + Synpcc7942_0432 0.81 -0.6
423,113 + Synpcc7942_0432 0.81 -1.4
423,118 - Synpcc7942_0432 0.82 +0.2
423,126 - Synpcc7942_0432 0.83 -0.2
423,176 + -1.6
423,176 + -1.6
423,176 + -1.6
423,182 + -2.8
423,184 - -1.4
423,184 - -2.3
423,184 - -3.2
423,193 + -0.4
423,228 + -2.3
423,228 + -1.7
423,228 + -0.2
423,236 - -1.4
423,240 + -1.5
423,248 - -2.5
423,250 + +1.6
423,300 + -1.1
423,380 + +0.2
423,392 + +0.2
423,397 + -1.6
423,397 + -1.1
423,397 + +0.4
423,402 + -2.4
423,402 + -3.7
423,402 + +0.7
423,402 + -2.1
423,405 - -0.2
423,407 - -1.9
423,409 + -0.4
423,409 + -0.3
423,410 - -3.6
423,411 + -0.8
423,411 + -2.7
423,419 - +0.2
423,419 - -2.3
423,451 + +1.3
423,503 + +0.3
423,503 + -2.1
423,511 - -0.9
423,511 - +1.0
423,545 + +0.0
423,545 + -4.1
423,553 - -2.0
423,553 - +0.5
423,553 - +0.3

Or see this region's nucleotide sequence