Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpC and petF are separated by 108 nucleotides petF and Synpcc7942_0339 are separated by 160 nucleotides Synpcc7942_0339 and Synpcc7942_0340 overlap by 4 nucleotides Synpcc7942_0340 and Synpcc7942_0341 overlap by 20 nucleotides
Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408
atpC
Synpcc7942_0338: petF - Ferredoxin (2Fe-2S), at 333,517 to 333,834
petF
Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074
_0339
Synpcc7942_0340: Synpcc7942_0340 - hypothetical protein, at 335,071 to 335,652
_0340
Synpcc7942_0341: Synpcc7942_0341 - hypothetical protein, at 335,633 to 336,205
_0341
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 333.461 kb on - strand at 333.469 kb on - strand at 333.555 kb on + strand, within petF at 333.564 kb on + strand, within petF at 333.564 kb on - strand, within petF at 333.597 kb on - strand, within petF at 333.601 kb on + strand, within petF at 333.640 kb on + strand, within petF at 333.645 kb on + strand, within petF at 333.656 kb on - strand, within petF at 333.662 kb on - strand, within petF at 333.708 kb on + strand, within petF at 333.713 kb on + strand, within petF at 333.727 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.740 kb on + strand, within petF at 333.740 kb on - strand, within petF at 333.741 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.756 kb on - strand, within petF at 333.757 kb on - strand, within petF at 333.801 kb on + strand, within petF at 333.810 kb on - strand at 333.829 kb on + strand at 333.843 kb on + strand at 333.857 kb on + strand at 333.866 kb on - strand at 333.917 kb on - strand at 333.961 kb on + strand at 333.991 kb on + strand at 333.991 kb on + strand at 333.999 kb on - strand at 333.999 kb on - strand at 334.003 kb on - strand at 334.007 kb on + strand at 334.007 kb on + strand at 334.015 kb on - strand at 334.105 kb on - strand, within Synpcc7942_0339 at 334.153 kb on + strand, within Synpcc7942_0339 at 334.375 kb on + strand, within Synpcc7942_0339 at 334.429 kb on + strand, within Synpcc7942_0339 at 334.468 kb on + strand, within Synpcc7942_0339 at 334.547 kb on + strand, within Synpcc7942_0339 at 334.758 kb on + strand, within Synpcc7942_0339 at 334.765 kb on + strand, within Synpcc7942_0339 at 334.790 kb on + strand, within Synpcc7942_0339 at 334.821 kb on - strand, within Synpcc7942_0339 at 334.856 kb on + strand, within Synpcc7942_0339 at 334.891 kb on - strand, within Synpcc7942_0339 at 334.954 kb on + strand, within Synpcc7942_0339 at 334.971 kb on + strand at 335.037 kb on + strand at 335.046 kb on + strand at 335.103 kb on - strand at 335.127 kb on + strand at 335.127 kb on + strand at 335.138 kb on - strand, within Synpcc7942_0340 at 335.196 kb on + strand, within Synpcc7942_0340 at 335.223 kb on - strand, within Synpcc7942_0340 at 335.242 kb on + strand, within Synpcc7942_0340 at 335.249 kb on + strand, within Synpcc7942_0340 at 335.249 kb on + strand, within Synpcc7942_0340 at 335.255 kb on - strand, within Synpcc7942_0340 at 335.262 kb on - strand at 335.273 kb on + strand, within Synpcc7942_0340 at 335.281 kb on - strand, within Synpcc7942_0340 at 335.304 kb on - strand, within Synpcc7942_0340 at 335.334 kb on + strand, within Synpcc7942_0340 at 335.348 kb on - strand, within Synpcc7942_0340 at 335.355 kb on + strand, within Synpcc7942_0340 at 335.363 kb on - strand, within Synpcc7942_0340 at 335.365 kb on + strand, within Synpcc7942_0340 at 335.389 kb on + strand, within Synpcc7942_0340 at 335.392 kb on - strand, within Synpcc7942_0340 at 335.392 kb on - strand, within Synpcc7942_0340 at 335.425 kb on + strand, within Synpcc7942_0340 at 335.426 kb on - strand, within Synpcc7942_0340 at 335.433 kb on - strand, within Synpcc7942_0340 at 335.501 kb on + strand, within Synpcc7942_0340 at 335.501 kb on + strand, within Synpcc7942_0340 at 335.502 kb on - strand, within Synpcc7942_0340 at 335.507 kb on - strand, within Synpcc7942_0340 at 335.509 kb on - strand, within Synpcc7942_0340 at 335.602 kb on - strand at 335.602 kb on - strand at 335.602 kb on - strand at 335.626 kb on - strand at 335.660 kb on + strand at 335.770 kb on - strand, within Synpcc7942_0341 at 335.809 kb on + strand, within Synpcc7942_0341 at 335.928 kb on + strand, within Synpcc7942_0341 at 335.937 kb on - strand, within Synpcc7942_0341 at 335.961 kb on + strand, within Synpcc7942_0341 at 335.969 kb on - strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.988 kb on - strand, within Synpcc7942_0341 at 336.029 kb on - strand, within Synpcc7942_0341 at 336.032 kb on + strand, within Synpcc7942_0341 at 336.038 kb on + strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 333,461 - -2.4 333,469 - +1.2 333,555 + petF Synpcc7942_0338 0.12 +0.8 333,564 + petF Synpcc7942_0338 0.15 -1.1 333,564 - petF Synpcc7942_0338 0.15 +1.8 333,597 - petF Synpcc7942_0338 0.25 +0.8 333,601 + petF Synpcc7942_0338 0.26 +1.0 333,640 + petF Synpcc7942_0338 0.39 +1.6 333,645 + petF Synpcc7942_0338 0.40 +0.1 333,656 - petF Synpcc7942_0338 0.44 +1.3 333,662 - petF Synpcc7942_0338 0.46 +0.6 333,708 + petF Synpcc7942_0338 0.60 -2.2 333,713 + petF Synpcc7942_0338 0.62 +1.9 333,727 + petF Synpcc7942_0338 0.66 +1.7 333,739 + petF Synpcc7942_0338 0.70 -2.1 333,739 + petF Synpcc7942_0338 0.70 +1.1 333,739 + petF Synpcc7942_0338 0.70 +0.7 333,739 + petF Synpcc7942_0338 0.70 +1.7 333,739 + petF Synpcc7942_0338 0.70 +1.3 333,740 + petF Synpcc7942_0338 0.70 -0.2 333,740 - petF Synpcc7942_0338 0.70 +0.5 333,741 - petF Synpcc7942_0338 0.70 -3.2 333,747 - petF Synpcc7942_0338 0.72 +1.2 333,747 - petF Synpcc7942_0338 0.72 -2.8 333,747 - petF Synpcc7942_0338 0.72 -2.1 333,747 - petF Synpcc7942_0338 0.72 -0.7 333,747 - petF Synpcc7942_0338 0.72 +1.3 333,747 - petF Synpcc7942_0338 0.72 -0.8 333,756 - petF Synpcc7942_0338 0.75 -0.6 333,757 - petF Synpcc7942_0338 0.75 +0.6 333,801 + petF Synpcc7942_0338 0.89 -2.4 333,810 - -0.2 333,829 + -0.8 333,843 + -4.6 333,857 + -2.8 333,866 - -2.7 333,917 - +3.0 333,961 + -2.5 333,991 + +0.3 333,991 + -1.3 333,999 - -0.3 333,999 - +0.7 334,003 - +0.5 334,007 + -0.6 334,007 + -2.8 334,015 - -1.9 334,105 - Synpcc7942_0339 0.10 -2.1 334,153 + Synpcc7942_0339 0.15 -4.2 334,375 + Synpcc7942_0339 0.35 -0.1 334,429 + Synpcc7942_0339 0.40 -2.8 334,468 + Synpcc7942_0339 0.44 -2.4 334,547 + Synpcc7942_0339 0.51 +1.4 334,758 + Synpcc7942_0339 0.71 -3.7 334,765 + Synpcc7942_0339 0.71 -2.0 334,790 + Synpcc7942_0339 0.74 -2.0 334,821 - Synpcc7942_0339 0.76 -3.6 334,856 + Synpcc7942_0339 0.80 -1.4 334,891 - Synpcc7942_0339 0.83 -2.0 334,954 + Synpcc7942_0339 0.89 -2.7 334,971 + -3.5 335,037 + +2.1 335,046 + +1.4 335,103 - -0.6 335,127 + -2.1 335,127 + -1.3 335,138 - Synpcc7942_0340 0.12 -2.1 335,196 + Synpcc7942_0340 0.21 -3.4 335,223 - Synpcc7942_0340 0.26 -2.5 335,242 + Synpcc7942_0340 0.29 -0.9 335,249 + Synpcc7942_0340 0.31 -0.5 335,249 + Synpcc7942_0340 0.31 +0.5 335,255 - Synpcc7942_0340 0.32 -1.4 335,262 - -0.1 335,273 + Synpcc7942_0340 0.35 -0.1 335,281 - Synpcc7942_0340 0.36 -2.2 335,304 - Synpcc7942_0340 0.40 -2.5 335,334 + Synpcc7942_0340 0.45 -1.5 335,348 - Synpcc7942_0340 0.48 -1.2 335,355 + Synpcc7942_0340 0.49 -1.8 335,363 - Synpcc7942_0340 0.50 -1.5 335,365 + Synpcc7942_0340 0.51 -2.7 335,389 + Synpcc7942_0340 0.55 -1.3 335,392 - Synpcc7942_0340 0.55 -0.4 335,392 - Synpcc7942_0340 0.55 -0.5 335,425 + Synpcc7942_0340 0.61 -0.4 335,426 - Synpcc7942_0340 0.61 -2.0 335,433 - Synpcc7942_0340 0.62 -1.5 335,501 + Synpcc7942_0340 0.74 -3.6 335,501 + Synpcc7942_0340 0.74 -3.9 335,502 - Synpcc7942_0340 0.74 -0.8 335,507 - Synpcc7942_0340 0.75 -2.5 335,509 - Synpcc7942_0340 0.75 -4.3 335,602 - -0.3 335,602 - -3.1 335,602 - -2.0 335,626 - +0.5 335,660 + +2.1 335,770 - Synpcc7942_0341 0.24 -0.1 335,809 + Synpcc7942_0341 0.31 -2.7 335,928 + Synpcc7942_0341 0.51 +0.7 335,937 - Synpcc7942_0341 0.53 +0.2 335,961 + Synpcc7942_0341 0.57 +1.3 335,969 - Synpcc7942_0341 0.59 -2.8 335,980 + Synpcc7942_0341 0.61 -0.7 335,980 + Synpcc7942_0341 0.61 +1.7 335,988 - Synpcc7942_0341 0.62 +0.4 336,029 - Synpcc7942_0341 0.69 -1.3 336,032 + Synpcc7942_0341 0.70 +1.9 336,038 + Synpcc7942_0341 0.71 -1.8 336,041 - Synpcc7942_0341 0.71 -3.7 336,041 - Synpcc7942_0341 0.71 +1.2 336,041 - Synpcc7942_0341 0.71 +1.6
Or see this region's nucleotide sequence