Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0329

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntapcE and Synpcc7942_0329 are separated by 214 nucleotidesSynpcc7942_0329 and atp1 are separated by 36 nucleotidesatp1 and atpI are separated by 25 nucleotides Synpcc7942_0328: apcE - phycobilisome core-membrane linker polypeptide, at 323,781 to 325,898 apcE Synpcc7942_0329: Synpcc7942_0329 - hypothetical protein, at 326,113 to 327,357 _0329 Synpcc7942_0330: atp1 - hypothetical protein, at 327,394 to 327,900 atp1 Synpcc7942_0331: atpI - F0F1 ATP synthase subunit A, at 327,926 to 328,711 atpI Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 326.081 kb on + strandat 326.089 kb on - strandat 326.115 kb on + strandat 326.125 kb on + strandat 326.166 kb on - strandat 326.166 kb on - strandat 326.171 kb on - strandat 326.196 kb on + strandat 326.196 kb on + strandat 326.204 kb on - strandat 326.204 kb on - strandat 326.211 kb on - strandat 326.219 kb on - strandat 326.224 kb on - strandat 326.227 kb on + strandat 326.264 kb on + strand, within Synpcc7942_0329at 326.264 kb on + strand, within Synpcc7942_0329at 326.265 kb on + strand, within Synpcc7942_0329at 326.272 kb on - strand, within Synpcc7942_0329at 326.273 kb on - strand, within Synpcc7942_0329at 326.277 kb on + strand, within Synpcc7942_0329at 326.278 kb on + strand, within Synpcc7942_0329at 326.278 kb on + strand, within Synpcc7942_0329at 326.279 kb on - strand, within Synpcc7942_0329at 326.286 kb on - strand, within Synpcc7942_0329at 326.364 kb on - strand, within Synpcc7942_0329at 326.376 kb on + strand, within Synpcc7942_0329at 326.384 kb on - strand, within Synpcc7942_0329at 326.384 kb on - strand, within Synpcc7942_0329at 326.402 kb on - strand, within Synpcc7942_0329at 326.404 kb on + strand, within Synpcc7942_0329at 326.445 kb on - strand, within Synpcc7942_0329at 326.447 kb on + strand, within Synpcc7942_0329at 326.458 kb on + strand, within Synpcc7942_0329at 326.495 kb on - strand, within Synpcc7942_0329at 326.500 kb on - strand, within Synpcc7942_0329at 326.512 kb on - strand, within Synpcc7942_0329at 326.513 kb on + strand, within Synpcc7942_0329at 326.530 kb on + strand, within Synpcc7942_0329at 326.530 kb on - strand, within Synpcc7942_0329at 326.540 kb on - strand, within Synpcc7942_0329at 326.548 kb on + strand, within Synpcc7942_0329at 326.548 kb on + strand, within Synpcc7942_0329at 326.548 kb on + strand, within Synpcc7942_0329at 326.548 kb on - strand, within Synpcc7942_0329at 326.610 kb on + strand, within Synpcc7942_0329at 326.620 kb on + strand, within Synpcc7942_0329at 326.620 kb on - strand, within Synpcc7942_0329at 326.629 kb on - strand, within Synpcc7942_0329at 326.684 kb on + strand, within Synpcc7942_0329at 326.688 kb on + strand, within Synpcc7942_0329at 326.688 kb on + strand, within Synpcc7942_0329at 326.688 kb on + strand, within Synpcc7942_0329at 326.692 kb on - strand, within Synpcc7942_0329at 326.696 kb on - strand, within Synpcc7942_0329at 326.696 kb on - strand, within Synpcc7942_0329at 326.696 kb on - strand, within Synpcc7942_0329at 326.696 kb on - strand, within Synpcc7942_0329at 326.711 kb on - strand, within Synpcc7942_0329at 326.836 kb on + strand, within Synpcc7942_0329at 326.845 kb on - strand, within Synpcc7942_0329at 326.850 kb on - strand, within Synpcc7942_0329at 326.888 kb on + strand, within Synpcc7942_0329at 326.888 kb on + strand, within Synpcc7942_0329at 326.888 kb on + strand, within Synpcc7942_0329at 326.896 kb on - strand, within Synpcc7942_0329at 326.902 kb on + strand, within Synpcc7942_0329at 326.920 kb on - strand, within Synpcc7942_0329at 326.966 kb on + strand, within Synpcc7942_0329at 326.971 kb on - strand, within Synpcc7942_0329at 326.974 kb on - strand, within Synpcc7942_0329at 326.974 kb on - strand, within Synpcc7942_0329at 326.974 kb on - strand, within Synpcc7942_0329at 327.069 kb on - strand, within Synpcc7942_0329at 327.081 kb on + strand, within Synpcc7942_0329at 327.084 kb on - strand, within Synpcc7942_0329at 327.095 kb on + strand, within Synpcc7942_0329at 327.103 kb on - strand, within Synpcc7942_0329at 327.153 kb on - strand, within Synpcc7942_0329at 327.199 kb on - strand, within Synpcc7942_0329at 327.199 kb on - strand, within Synpcc7942_0329at 327.199 kb on - strand, within Synpcc7942_0329at 327.206 kb on - strand, within Synpcc7942_0329at 327.209 kb on - strand, within Synpcc7942_0329at 327.211 kb on + strand, within Synpcc7942_0329at 327.211 kb on + strand, within Synpcc7942_0329at 327.219 kb on - strand, within Synpcc7942_0329at 327.221 kb on + strand, within Synpcc7942_0329at 327.221 kb on + strand, within Synpcc7942_0329at 327.229 kb on - strandat 327.229 kb on - strand, within Synpcc7942_0329at 327.360 kb on - strandat 327.362 kb on + strandat 327.370 kb on - strandat 327.370 kb on - strandat 327.370 kb on - strandat 327.370 kb on - strandat 327.380 kb on - strandat 327.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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326,081 + +2.8
326,089 - +2.9
326,115 + +2.3
326,125 + +3.5
326,166 - +0.2
326,166 - -2.7
326,171 - +2.2
326,196 + +4.2
326,196 + +4.2
326,204 - +2.1
326,204 - +4.7
326,211 - +4.0
326,219 - +4.7
326,224 - +5.4
326,227 + +4.2
326,264 + Synpcc7942_0329 0.12 +5.4
326,264 + Synpcc7942_0329 0.12 +3.5
326,265 + Synpcc7942_0329 0.12 +4.3
326,272 - Synpcc7942_0329 0.13 +2.2
326,273 - Synpcc7942_0329 0.13 +4.1
326,277 + Synpcc7942_0329 0.13 +5.0
326,278 + Synpcc7942_0329 0.13 -1.2
326,278 + Synpcc7942_0329 0.13 +4.7
326,279 - Synpcc7942_0329 0.13 +4.5
326,286 - Synpcc7942_0329 0.14 +4.4
326,364 - Synpcc7942_0329 0.20 +3.9
326,376 + Synpcc7942_0329 0.21 +4.8
326,384 - Synpcc7942_0329 0.22 +6.3
326,384 - Synpcc7942_0329 0.22 +2.1
326,402 - Synpcc7942_0329 0.23 +4.2
326,404 + Synpcc7942_0329 0.23 +2.0
326,445 - Synpcc7942_0329 0.27 +4.2
326,447 + Synpcc7942_0329 0.27 +5.7
326,458 + Synpcc7942_0329 0.28 +4.0
326,495 - Synpcc7942_0329 0.31 +4.9
326,500 - Synpcc7942_0329 0.31 +3.5
326,512 - Synpcc7942_0329 0.32 +3.5
326,513 + Synpcc7942_0329 0.32 +5.3
326,530 + Synpcc7942_0329 0.33 +2.8
326,530 - Synpcc7942_0329 0.33 +1.7
326,540 - Synpcc7942_0329 0.34 +4.6
326,548 + Synpcc7942_0329 0.35 +4.4
326,548 + Synpcc7942_0329 0.35 +5.1
326,548 + Synpcc7942_0329 0.35 +3.8
326,548 - Synpcc7942_0329 0.35 +4.7
326,610 + Synpcc7942_0329 0.40 +2.2
326,620 + Synpcc7942_0329 0.41 +4.7
326,620 - Synpcc7942_0329 0.41 +4.5
326,629 - Synpcc7942_0329 0.41 +4.5
326,684 + Synpcc7942_0329 0.46 +1.5
326,688 + Synpcc7942_0329 0.46 +1.1
326,688 + Synpcc7942_0329 0.46 +1.7
326,688 + Synpcc7942_0329 0.46 +4.8
326,692 - Synpcc7942_0329 0.47 +2.6
326,696 - Synpcc7942_0329 0.47 +3.2
326,696 - Synpcc7942_0329 0.47 +4.1
326,696 - Synpcc7942_0329 0.47 +3.7
326,696 - Synpcc7942_0329 0.47 +4.3
326,711 - Synpcc7942_0329 0.48 +4.1
326,836 + Synpcc7942_0329 0.58 +5.0
326,845 - Synpcc7942_0329 0.59 +2.1
326,850 - Synpcc7942_0329 0.59 +5.3
326,888 + Synpcc7942_0329 0.62 +2.3
326,888 + Synpcc7942_0329 0.62 +1.0
326,888 + Synpcc7942_0329 0.62 +1.9
326,896 - Synpcc7942_0329 0.63 +2.1
326,902 + Synpcc7942_0329 0.63 +1.9
326,920 - Synpcc7942_0329 0.65 +4.3
326,966 + Synpcc7942_0329 0.69 +3.5
326,971 - Synpcc7942_0329 0.69 +2.2
326,974 - Synpcc7942_0329 0.69 +0.6
326,974 - Synpcc7942_0329 0.69 +1.5
326,974 - Synpcc7942_0329 0.69 +2.0
327,069 - Synpcc7942_0329 0.77 +4.5
327,081 + Synpcc7942_0329 0.78 +5.2
327,084 - Synpcc7942_0329 0.78 +1.6
327,095 + Synpcc7942_0329 0.79 +5.4
327,103 - Synpcc7942_0329 0.80 +2.4
327,153 - Synpcc7942_0329 0.84 +5.6
327,199 - Synpcc7942_0329 0.87 +5.2
327,199 - Synpcc7942_0329 0.87 +5.9
327,199 - Synpcc7942_0329 0.87 +3.9
327,206 - Synpcc7942_0329 0.88 +3.6
327,209 - Synpcc7942_0329 0.88 +3.5
327,211 + Synpcc7942_0329 0.88 +5.2
327,211 + Synpcc7942_0329 0.88 +3.0
327,219 - Synpcc7942_0329 0.89 +7.0
327,221 + Synpcc7942_0329 0.89 +4.1
327,221 + Synpcc7942_0329 0.89 +5.2
327,229 - +5.2
327,229 - Synpcc7942_0329 0.90 +5.8
327,360 - +1.8
327,362 + -1.3
327,370 - +1.9
327,370 - +1.6
327,370 - -1.4
327,370 - -0.5
327,380 - +1.7
327,960 - +7.0

Or see this region's nucleotide sequence