Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0305 and chlP overlap by 7 nucleotides chlP and napA are separated by 362 nucleotides napA and chpX are separated by 32 nucleotides
Synpcc7942_0305: Synpcc7942_0305 - hypothetical protein, at 303,815 to 304,045
_0305
Synpcc7942_0306: chlP - hypothetical protein, at 304,039 to 304,347
chlP
Synpcc7942_0307: napA - Na+/H+ antiporter, at 304,710 to 305,936
napA
Synpcc7942_0308: chpX - CO2 hydration protein, at 305,969 to 307,108
chpX
Position (kb) 304
305
306 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 303.765 kb on + strand at 303.765 kb on + strand at 303.777 kb on + strand at 303.810 kb on + strand at 303.856 kb on + strand, within Synpcc7942_0305 at 303.856 kb on + strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.883 kb on + strand, within Synpcc7942_0305 at 303.924 kb on - strand, within Synpcc7942_0305 at 304.053 kb on + strand at 304.194 kb on - strand, within chlP at 304.227 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.245 kb on - strand, within chlP at 304.245 kb on - strand, within chlP at 304.279 kb on + strand, within chlP at 304.279 kb on + strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.333 kb on + strand at 304.333 kb on - strand at 304.333 kb on - strand at 304.377 kb on + strand at 304.377 kb on + strand at 304.388 kb on + strand at 304.415 kb on - strand at 304.415 kb on - strand at 304.427 kb on + strand at 304.427 kb on + strand at 304.440 kb on + strand at 304.458 kb on + strand at 304.459 kb on + strand at 304.466 kb on - strand at 304.466 kb on - strand at 304.481 kb on + strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.499 kb on - strand at 304.504 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.546 kb on - strand at 304.554 kb on - strand at 304.586 kb on + strand at 304.591 kb on - strand at 304.608 kb on - strand at 304.608 kb on - strand at 304.624 kb on - strand at 304.642 kb on - strand at 304.685 kb on - strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.704 kb on - strand at 304.709 kb on - strand at 304.710 kb on - strand at 304.730 kb on - strand at 304.759 kb on + strand at 304.759 kb on + strand at 304.767 kb on - strand at 304.767 kb on - strand at 304.790 kb on + strand at 304.790 kb on + strand at 304.798 kb on - strand at 304.798 kb on - strand at 304.817 kb on + strand at 304.825 kb on - strand at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.888 kb on - strand, within napA at 304.919 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.966 kb on - strand, within napA at 304.970 kb on - strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.048 kb on - strand, within napA at 305.048 kb on - strand, within napA at 305.065 kb on + strand, within napA at 305.073 kb on - strand, within napA at 305.075 kb on - strand, within napA at 305.078 kb on + strand at 305.085 kb on - strand, within napA at 305.108 kb on - strand, within napA at 305.177 kb on + strand, within napA at 305.199 kb on - strand, within napA at 305.205 kb on + strand, within napA at 305.227 kb on + strand, within napA at 305.247 kb on + strand, within napA at 305.267 kb on - strand, within napA at 305.291 kb on - strand at 305.326 kb on - strand, within napA at 305.328 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.341 kb on - strand, within napA at 305.341 kb on - strand, within napA at 305.374 kb on - strand at 305.393 kb on + strand, within napA at 305.418 kb on - strand, within napA at 305.421 kb on + strand, within napA at 305.461 kb on + strand, within napA at 305.506 kb on - strand, within napA at 305.523 kb on + strand, within napA at 305.523 kb on + strand, within napA at 305.525 kb on - strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on + strand, within napA at 305.531 kb on - strand, within napA at 305.539 kb on - strand, within napA at 305.539 kb on - strand, within napA at 305.565 kb on + strand, within napA at 305.571 kb on + strand at 305.571 kb on + strand, within napA at 305.668 kb on + strand, within napA at 305.668 kb on + strand, within napA at 305.678 kb on + strand, within napA at 305.718 kb on + strand, within napA at 305.721 kb on - strand, within napA at 305.744 kb on - strand, within napA at 305.752 kb on - strand, within napA at 305.778 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.788 kb on - strand, within napA at 305.792 kb on + strand, within napA at 305.831 kb on + strand at 305.839 kb on - strand at 305.839 kb on - strand at 305.852 kb on - strand at 305.852 kb on - strand at 305.852 kb on - strand at 305.877 kb on + strand at 305.880 kb on - strand at 305.933 kb on + strand at 305.939 kb on - strand at 305.953 kb on - strand at 305.960 kb on + strand at 305.971 kb on + strand at 306.003 kb on + strand at 306.003 kb on + strand at 306.006 kb on - strand at 306.011 kb on - strand at 306.011 kb on - strand at 306.018 kb on + strand at 306.032 kb on - strand at 306.061 kb on + strand at 306.093 kb on - strand, within chpX at 306.165 kb on + strand, within chpX at 306.186 kb on + strand, within chpX at 306.227 kb on + strand, within chpX at 306.227 kb on + strand, within chpX at 306.264 kb on + strand, within chpX at 306.342 kb on + strand, within chpX at 306.352 kb on - strand, within chpX at 306.377 kb on + strand, within chpX at 306.398 kb on + strand, within chpX at 306.398 kb on + strand, within chpX at 306.400 kb on - strand, within chpX at 306.412 kb on + strand, within chpX at 306.597 kb on - strand, within chpX at 306.606 kb on + strand, within chpX at 306.616 kb on + strand, within chpX at 306.629 kb on + strand, within chpX at 306.637 kb on - strand, within chpX at 306.637 kb on - strand, within chpX at 306.675 kb on + strand, within chpX at 306.687 kb on + strand, within chpX at 306.691 kb on + strand, within chpX at 306.748 kb on + strand, within chpX at 306.804 kb on + strand, within chpX at 306.819 kb on - strand, within chpX at 306.832 kb on - strand, within chpX at 306.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 303,765 + -1.4 303,765 + +0.0 303,777 + -1.4 303,810 + -2.5 303,856 + Synpcc7942_0305 0.18 -2.4 303,856 + Synpcc7942_0305 0.18 -3.2 303,864 - Synpcc7942_0305 0.21 -2.9 303,864 - Synpcc7942_0305 0.21 -1.1 303,883 + Synpcc7942_0305 0.29 -3.8 303,924 - Synpcc7942_0305 0.47 -2.5 304,053 + +0.7 304,194 - chlP Synpcc7942_0306 0.50 +0.3 304,227 + chlP Synpcc7942_0306 0.61 -0.5 304,237 + chlP Synpcc7942_0306 0.64 +2.4 304,237 + chlP Synpcc7942_0306 0.64 +1.3 304,245 - chlP Synpcc7942_0306 0.67 +0.6 304,245 - chlP Synpcc7942_0306 0.67 -0.6 304,279 + chlP Synpcc7942_0306 0.78 +1.8 304,279 + chlP Synpcc7942_0306 0.78 -2.1 304,287 - chlP Synpcc7942_0306 0.80 -2.7 304,287 - chlP Synpcc7942_0306 0.80 +0.7 304,287 - chlP Synpcc7942_0306 0.80 +1.0 304,325 + -0.4 304,325 + -1.3 304,325 + +1.3 304,325 + +2.1 304,325 + -1.3 304,325 + -0.7 304,325 + +1.0 304,325 + -1.5 304,333 + -0.7 304,333 - +1.0 304,333 - -2.5 304,377 + -2.5 304,377 + -0.4 304,388 + -0.4 304,415 - -0.3 304,415 - -0.7 304,427 + +0.6 304,427 + -3.5 304,440 + +0.4 304,458 + +1.3 304,459 + +0.8 304,466 - +1.7 304,466 - +2.5 304,481 + -2.2 304,489 - +0.4 304,489 - -1.0 304,489 - -1.9 304,499 - +0.3 304,504 + -0.0 304,531 + -2.5 304,531 + -0.1 304,531 + -2.2 304,546 - +1.7 304,554 - +2.9 304,586 + -0.5 304,591 - -2.1 304,608 - -0.8 304,608 - -2.0 304,624 - -2.8 304,642 - -0.7 304,685 - -1.1 304,686 + -1.4 304,686 + +1.1 304,686 + +2.0 304,686 + -2.3 304,694 - +0.3 304,694 - +0.9 304,694 - -1.7 304,694 - -3.2 304,694 - -2.4 304,704 - +1.5 304,709 - -2.5 304,710 - +2.1 304,730 - +0.8 304,759 + +1.5 304,759 + +0.5 304,767 - -2.4 304,767 - -0.8 304,790 + +1.1 304,790 + +1.3 304,798 - +2.0 304,798 - +2.3 304,817 + +0.3 304,825 - +1.8 304,875 + napA Synpcc7942_0307 0.13 -1.1 304,875 + napA Synpcc7942_0307 0.13 -2.2 304,875 + napA Synpcc7942_0307 0.13 -1.7 304,888 - napA Synpcc7942_0307 0.15 +0.8 304,919 + napA Synpcc7942_0307 0.17 -1.9 304,947 + napA Synpcc7942_0307 0.19 +2.1 304,947 + napA Synpcc7942_0307 0.19 +0.6 304,955 - napA Synpcc7942_0307 0.20 -1.9 304,955 - napA Synpcc7942_0307 0.20 -3.0 304,955 - napA Synpcc7942_0307 0.20 -0.7 304,955 - napA Synpcc7942_0307 0.20 -2.1 304,955 - napA Synpcc7942_0307 0.20 +0.5 304,955 - napA Synpcc7942_0307 0.20 -0.1 304,966 - napA Synpcc7942_0307 0.21 -2.4 304,970 - napA Synpcc7942_0307 0.21 +1.8 305,040 + napA Synpcc7942_0307 0.27 +1.5 305,040 + napA Synpcc7942_0307 0.27 +1.0 305,040 + napA Synpcc7942_0307 0.27 +1.9 305,048 - napA Synpcc7942_0307 0.28 +0.3 305,048 - napA Synpcc7942_0307 0.28 -2.1 305,065 + napA Synpcc7942_0307 0.29 +0.9 305,073 - napA Synpcc7942_0307 0.30 +2.7 305,075 - napA Synpcc7942_0307 0.30 +0.6 305,078 + -1.9 305,085 - napA Synpcc7942_0307 0.31 -0.4 305,108 - napA Synpcc7942_0307 0.32 +2.3 305,177 + napA Synpcc7942_0307 0.38 -0.5 305,199 - napA Synpcc7942_0307 0.40 +2.3 305,205 + napA Synpcc7942_0307 0.40 -2.4 305,227 + napA Synpcc7942_0307 0.42 -2.2 305,247 + napA Synpcc7942_0307 0.44 +1.3 305,267 - napA Synpcc7942_0307 0.45 +0.4 305,291 - +2.4 305,326 - napA Synpcc7942_0307 0.50 -1.5 305,328 + napA Synpcc7942_0307 0.50 -0.9 305,333 + napA Synpcc7942_0307 0.51 +2.7 305,333 + napA Synpcc7942_0307 0.51 +1.9 305,341 - napA Synpcc7942_0307 0.51 -1.3 305,341 - napA Synpcc7942_0307 0.51 -2.6 305,374 - +1.0 305,393 + napA Synpcc7942_0307 0.56 +0.4 305,418 - napA Synpcc7942_0307 0.58 -1.2 305,421 + napA Synpcc7942_0307 0.58 +1.8 305,461 + napA Synpcc7942_0307 0.61 +0.5 305,506 - napA Synpcc7942_0307 0.65 -1.8 305,523 + napA Synpcc7942_0307 0.66 +0.9 305,523 + napA Synpcc7942_0307 0.66 +1.0 305,525 - napA Synpcc7942_0307 0.66 +0.9 305,531 + napA Synpcc7942_0307 0.67 -1.1 305,531 + napA Synpcc7942_0307 0.67 +1.7 305,531 + napA Synpcc7942_0307 0.67 +2.0 305,531 + napA Synpcc7942_0307 0.67 +1.9 305,531 + napA Synpcc7942_0307 0.67 +0.6 305,531 + napA Synpcc7942_0307 0.67 -0.7 305,531 - napA Synpcc7942_0307 0.67 -1.0 305,539 - napA Synpcc7942_0307 0.68 +1.5 305,539 - napA Synpcc7942_0307 0.68 +2.5 305,565 + napA Synpcc7942_0307 0.70 -1.1 305,571 + +0.6 305,571 + napA Synpcc7942_0307 0.70 +2.0 305,668 + napA Synpcc7942_0307 0.78 +0.5 305,668 + napA Synpcc7942_0307 0.78 +1.3 305,678 + napA Synpcc7942_0307 0.79 +2.5 305,718 + napA Synpcc7942_0307 0.82 +1.2 305,721 - napA Synpcc7942_0307 0.82 +1.4 305,744 - napA Synpcc7942_0307 0.84 -0.3 305,752 - napA Synpcc7942_0307 0.85 -0.2 305,778 - napA Synpcc7942_0307 0.87 +0.1 305,788 - napA Synpcc7942_0307 0.88 -1.5 305,788 - napA Synpcc7942_0307 0.88 +2.7 305,788 - napA Synpcc7942_0307 0.88 +0.8 305,792 + napA Synpcc7942_0307 0.88 +1.5 305,831 + +1.7 305,839 - -2.3 305,839 - +2.0 305,852 - -1.7 305,852 - +1.3 305,852 - -1.6 305,877 + +1.2 305,880 - -0.1 305,933 + -2.1 305,939 - -1.4 305,953 - +0.5 305,960 + -1.3 305,971 + -6.0 306,003 + -1.5 306,003 + +3.4 306,006 - -0.1 306,011 - +1.1 306,011 - -1.8 306,018 + -0.7 306,032 - -1.7 306,061 + +1.3 306,093 - chpX Synpcc7942_0308 0.11 +1.6 306,165 + chpX Synpcc7942_0308 0.17 +0.4 306,186 + chpX Synpcc7942_0308 0.19 -0.7 306,227 + chpX Synpcc7942_0308 0.23 -1.3 306,227 + chpX Synpcc7942_0308 0.23 +1.1 306,264 + chpX Synpcc7942_0308 0.26 +1.8 306,342 + chpX Synpcc7942_0308 0.33 +1.1 306,352 - chpX Synpcc7942_0308 0.34 +2.6 306,377 + chpX Synpcc7942_0308 0.36 +0.8 306,398 + chpX Synpcc7942_0308 0.38 -1.4 306,398 + chpX Synpcc7942_0308 0.38 +1.3 306,400 - chpX Synpcc7942_0308 0.38 +1.5 306,412 + chpX Synpcc7942_0308 0.39 +1.6 306,597 - chpX Synpcc7942_0308 0.55 +3.7 306,606 + chpX Synpcc7942_0308 0.56 +1.7 306,616 + chpX Synpcc7942_0308 0.57 +1.1 306,629 + chpX Synpcc7942_0308 0.58 +1.0 306,637 - chpX Synpcc7942_0308 0.59 -0.8 306,637 - chpX Synpcc7942_0308 0.59 +1.4 306,675 + chpX Synpcc7942_0308 0.62 +0.8 306,687 + chpX Synpcc7942_0308 0.63 +2.0 306,691 + chpX Synpcc7942_0308 0.63 +0.7 306,748 + chpX Synpcc7942_0308 0.68 +2.5 306,804 + chpX Synpcc7942_0308 0.73 +0.2 306,819 - chpX Synpcc7942_0308 0.75 -0.9 306,832 - chpX Synpcc7942_0308 0.76 +1.5 306,862 + +1.9
Or see this region's nucleotide sequence