Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0229

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpth and Synpcc7942_0228 are separated by 28 nucleotidesSynpcc7942_0228 and Synpcc7942_0229 are separated by 113 nucleotidesSynpcc7942_0229 and Synpcc7942_0230 are separated by 41 nucleotides Synpcc7942_0227: pth - peptidyl-tRNA hydrolase, at 224,629 to 225,255 pth Synpcc7942_0228: Synpcc7942_0228 - hypothetical protein, at 225,284 to 225,544 _0228 Synpcc7942_0229: Synpcc7942_0229 - hypothetical protein, at 225,658 to 226,221 _0229 Synpcc7942_0230: Synpcc7942_0230 - hypothetical protein, at 226,263 to 227,309 _0230 Position (kb) 225 226 227Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 225.183 kb on + strandat 225.227 kb on + strandat 225.235 kb on - strandat 225.235 kb on - strandat 225.249 kb on + strandat 225.257 kb on - strandat 225.257 kb on - strandat 225.257 kb on - strandat 225.261 kb on + strandat 225.261 kb on + strandat 225.264 kb on - strandat 225.275 kb on + strandat 225.279 kb on - strandat 225.311 kb on + strand, within Synpcc7942_0228at 225.319 kb on - strand, within Synpcc7942_0228at 225.337 kb on - strand, within Synpcc7942_0228at 225.359 kb on + strand, within Synpcc7942_0228at 225.378 kb on + strand, within Synpcc7942_0228at 225.398 kb on - strand, within Synpcc7942_0228at 225.423 kb on + strand, within Synpcc7942_0228at 225.425 kb on + strand, within Synpcc7942_0228at 225.464 kb on + strand, within Synpcc7942_0228at 225.500 kb on + strand, within Synpcc7942_0228at 225.527 kb on - strandat 225.560 kb on + strandat 225.572 kb on + strandat 225.580 kb on - strandat 225.617 kb on - strandat 225.630 kb on + strandat 225.630 kb on + strandat 225.630 kb on + strandat 225.638 kb on - strandat 225.676 kb on + strandat 225.701 kb on + strandat 225.721 kb on + strand, within Synpcc7942_0229at 225.723 kb on + strand, within Synpcc7942_0229at 225.804 kb on + strand, within Synpcc7942_0229at 225.814 kb on - strand, within Synpcc7942_0229at 225.821 kb on - strand, within Synpcc7942_0229at 226.010 kb on - strand, within Synpcc7942_0229at 226.020 kb on - strand, within Synpcc7942_0229at 226.093 kb on + strand, within Synpcc7942_0229at 226.107 kb on - strand, within Synpcc7942_0229at 226.121 kb on - strand, within Synpcc7942_0229at 226.121 kb on - strand, within Synpcc7942_0229at 226.160 kb on + strand, within Synpcc7942_0229at 226.168 kb on - strandat 226.168 kb on - strandat 226.181 kb on - strandat 226.190 kb on + strandat 226.190 kb on + strandat 226.237 kb on + strandat 226.237 kb on + strandat 226.243 kb on + strandat 226.268 kb on - strandat 226.325 kb on + strandat 226.333 kb on - strandat 226.366 kb on + strandat 226.366 kb on - strandat 226.367 kb on - strandat 226.374 kb on - strand, within Synpcc7942_0230at 226.374 kb on - strand, within Synpcc7942_0230at 226.385 kb on - strand, within Synpcc7942_0230at 226.412 kb on - strand, within Synpcc7942_0230at 226.416 kb on - strand, within Synpcc7942_0230at 226.416 kb on - strand, within Synpcc7942_0230at 226.473 kb on - strand, within Synpcc7942_0230at 226.473 kb on - strand, within Synpcc7942_0230at 226.484 kb on + strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.507 kb on + strand, within Synpcc7942_0230at 226.515 kb on - strand, within Synpcc7942_0230at 226.563 kb on - strand, within Synpcc7942_0230at 226.565 kb on + strand, within Synpcc7942_0230at 226.573 kb on - strand, within Synpcc7942_0230at 226.573 kb on - strand, within Synpcc7942_0230at 226.632 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.652 kb on - strandat 226.652 kb on - strand, within Synpcc7942_0230at 226.654 kb on + strand, within Synpcc7942_0230at 226.661 kb on - strand, within Synpcc7942_0230at 226.685 kb on - strand, within Synpcc7942_0230at 226.719 kb on - strand, within Synpcc7942_0230at 226.732 kb on + strand, within Synpcc7942_0230at 226.744 kb on - strand, within Synpcc7942_0230at 226.745 kb on - strand, within Synpcc7942_0230at 226.773 kb on - strand, within Synpcc7942_0230at 226.773 kb on - strand, within Synpcc7942_0230at 226.775 kb on + strand, within Synpcc7942_0230at 226.775 kb on - strand, within Synpcc7942_0230at 226.787 kb on + strand, within Synpcc7942_0230at 226.788 kb on - strand, within Synpcc7942_0230at 226.803 kb on + strand, within Synpcc7942_0230at 226.833 kb on + strand, within Synpcc7942_0230at 226.917 kb on + strand, within Synpcc7942_0230at 226.966 kb on - strand, within Synpcc7942_0230at 226.971 kb on - strand, within Synpcc7942_0230at 227.000 kb on - strand, within Synpcc7942_0230at 227.009 kb on - strand, within Synpcc7942_0230at 227.012 kb on + strand, within Synpcc7942_0230at 227.017 kb on + strand, within Synpcc7942_0230at 227.017 kb on + strand, within Synpcc7942_0230at 227.020 kb on - strand, within Synpcc7942_0230at 227.025 kb on - strand, within Synpcc7942_0230at 227.025 kb on - strand, within Synpcc7942_0230at 227.054 kb on + strand, within Synpcc7942_0230at 227.085 kb on - strand, within Synpcc7942_0230at 227.106 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.125 kb on - strand, within Synpcc7942_0230at 227.137 kb on + strand, within Synpcc7942_0230at 227.137 kb on + strand, within Synpcc7942_0230at 227.144 kb on - strand, within Synpcc7942_0230at 227.163 kb on + strand, within Synpcc7942_0230at 227.171 kb on - strand, within Synpcc7942_0230at 227.187 kb on + strand, within Synpcc7942_0230at 227.195 kb on - strand, within Synpcc7942_0230at 227.201 kb on - strand, within Synpcc7942_0230at 227.217 kb on - strandat 227.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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225,183 + -1.7
225,227 + +1.0
225,235 - -0.6
225,235 - +1.5
225,249 + +0.5
225,257 - -1.7
225,257 - -1.8
225,257 - +0.2
225,261 + +0.7
225,261 + -4.3
225,264 - +0.3
225,275 + +1.3
225,279 - -0.5
225,311 + Synpcc7942_0228 0.10 -0.7
225,319 - Synpcc7942_0228 0.13 +0.8
225,337 - Synpcc7942_0228 0.20 -2.0
225,359 + Synpcc7942_0228 0.29 -0.6
225,378 + Synpcc7942_0228 0.36 +2.7
225,398 - Synpcc7942_0228 0.44 -0.8
225,423 + Synpcc7942_0228 0.53 -0.4
225,425 + Synpcc7942_0228 0.54 -1.5
225,464 + Synpcc7942_0228 0.69 +0.1
225,500 + Synpcc7942_0228 0.83 -1.3
225,527 - -4.1
225,560 + -2.6
225,572 + +0.7
225,580 - +0.9
225,617 - +0.8
225,630 + -2.5
225,630 + -0.8
225,630 + -0.8
225,638 - -2.4
225,676 + +0.6
225,701 + -1.8
225,721 + Synpcc7942_0229 0.11 +0.7
225,723 + Synpcc7942_0229 0.12 +1.3
225,804 + Synpcc7942_0229 0.26 -3.6
225,814 - Synpcc7942_0229 0.28 +0.9
225,821 - Synpcc7942_0229 0.29 +1.5
226,010 - Synpcc7942_0229 0.62 +2.1
226,020 - Synpcc7942_0229 0.64 -1.3
226,093 + Synpcc7942_0229 0.77 -1.0
226,107 - Synpcc7942_0229 0.80 +1.5
226,121 - Synpcc7942_0229 0.82 +0.8
226,121 - Synpcc7942_0229 0.82 -3.5
226,160 + Synpcc7942_0229 0.89 +0.7
226,168 - -0.5
226,168 - +1.7
226,181 - -0.3
226,190 + -1.9
226,190 + +1.4
226,237 + -2.9
226,237 + +0.2
226,243 + -0.5
226,268 - -1.0
226,325 + +1.2
226,333 - +1.4
226,366 + +0.4
226,366 - -2.2
226,367 - -0.1
226,374 - Synpcc7942_0230 0.11 +0.6
226,374 - Synpcc7942_0230 0.11 +1.3
226,385 - Synpcc7942_0230 0.12 +0.9
226,412 - Synpcc7942_0230 0.14 +2.0
226,416 - Synpcc7942_0230 0.15 +1.4
226,416 - Synpcc7942_0230 0.15 +1.0
226,473 - Synpcc7942_0230 0.20 +1.5
226,473 - Synpcc7942_0230 0.20 +0.1
226,484 + Synpcc7942_0230 0.21 +0.3
226,492 - Synpcc7942_0230 0.22 -2.9
226,492 - Synpcc7942_0230 0.22 +0.5
226,492 - Synpcc7942_0230 0.22 -1.4
226,507 + Synpcc7942_0230 0.23 +0.9
226,515 - Synpcc7942_0230 0.24 -1.5
226,563 - Synpcc7942_0230 0.29 -0.6
226,565 + Synpcc7942_0230 0.29 -1.5
226,573 - Synpcc7942_0230 0.30 +0.7
226,573 - Synpcc7942_0230 0.30 -0.8
226,632 + Synpcc7942_0230 0.35 -0.9
226,644 + Synpcc7942_0230 0.36 +0.4
226,644 + Synpcc7942_0230 0.36 -0.7
226,644 + Synpcc7942_0230 0.36 -3.6
226,644 + Synpcc7942_0230 0.36 +1.2
226,652 - -1.5
226,652 - Synpcc7942_0230 0.37 -0.5
226,654 + Synpcc7942_0230 0.37 -0.9
226,661 - Synpcc7942_0230 0.38 -2.6
226,685 - Synpcc7942_0230 0.40 +0.3
226,719 - Synpcc7942_0230 0.44 +0.6
226,732 + Synpcc7942_0230 0.45 -3.1
226,744 - Synpcc7942_0230 0.46 -5.6
226,745 - Synpcc7942_0230 0.46 +0.4
226,773 - Synpcc7942_0230 0.49 -4.1
226,773 - Synpcc7942_0230 0.49 +0.1
226,775 + Synpcc7942_0230 0.49 +0.3
226,775 - Synpcc7942_0230 0.49 +0.9
226,787 + Synpcc7942_0230 0.50 +0.5
226,788 - Synpcc7942_0230 0.50 +1.1
226,803 + Synpcc7942_0230 0.52 -0.1
226,833 + Synpcc7942_0230 0.54 -2.3
226,917 + Synpcc7942_0230 0.62 -0.2
226,966 - Synpcc7942_0230 0.67 +1.1
226,971 - Synpcc7942_0230 0.68 -2.9
227,000 - Synpcc7942_0230 0.70 +1.3
227,009 - Synpcc7942_0230 0.71 +0.4
227,012 + Synpcc7942_0230 0.72 +1.1
227,017 + Synpcc7942_0230 0.72 -0.8
227,017 + Synpcc7942_0230 0.72 +1.0
227,020 - Synpcc7942_0230 0.72 -1.2
227,025 - Synpcc7942_0230 0.73 -2.7
227,025 - Synpcc7942_0230 0.73 +1.2
227,054 + Synpcc7942_0230 0.76 -0.0
227,085 - Synpcc7942_0230 0.79 +0.4
227,106 + Synpcc7942_0230 0.81 -0.2
227,117 + Synpcc7942_0230 0.82 +0.9
227,117 + Synpcc7942_0230 0.82 +1.4
227,117 + Synpcc7942_0230 0.82 +0.1
227,125 - Synpcc7942_0230 0.82 -1.5
227,137 + Synpcc7942_0230 0.83 -2.6
227,137 + Synpcc7942_0230 0.83 +1.6
227,144 - Synpcc7942_0230 0.84 +2.0
227,163 + Synpcc7942_0230 0.86 -1.0
227,171 - Synpcc7942_0230 0.87 +0.6
227,187 + Synpcc7942_0230 0.88 -0.8
227,195 - Synpcc7942_0230 0.89 +1.1
227,201 - Synpcc7942_0230 0.90 +0.3
227,217 - -2.7
227,220 - +0.7

Or see this region's nucleotide sequence