Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0132 and Synpcc7942_0133 are separated by 144 nucleotides Synpcc7942_0133 and Synpcc7942_0134 overlap by 10 nucleotides
Synpcc7942_0132: Synpcc7942_0132 - hypothetical protein, at 132,721 to 133,770
_0132
Synpcc7942_0133: Synpcc7942_0133 - hypothetical protein, at 133,915 to 134,754
_0133
Synpcc7942_0134: Synpcc7942_0134 - hypothetical protein, at 134,745 to 136,052
_0134
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.915 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.916 kb on - strand, within Synpcc7942_0132 at 132.927 kb on + strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.935 kb on - strand, within Synpcc7942_0132 at 132.949 kb on - strand at 132.956 kb on - strand, within Synpcc7942_0132 at 132.957 kb on - strand, within Synpcc7942_0132 at 132.972 kb on - strand, within Synpcc7942_0132 at 132.998 kb on + strand, within Synpcc7942_0132 at 133.006 kb on - strand, within Synpcc7942_0132 at 133.006 kb on - strand at 133.006 kb on - strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.008 kb on + strand, within Synpcc7942_0132 at 133.016 kb on - strand, within Synpcc7942_0132 at 133.026 kb on - strand at 133.034 kb on + strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.041 kb on - strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.048 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.101 kb on + strand, within Synpcc7942_0132 at 133.109 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.120 kb on - strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.148 kb on + strand, within Synpcc7942_0132 at 133.156 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.166 kb on - strand, within Synpcc7942_0132 at 133.190 kb on + strand at 133.198 kb on - strand, within Synpcc7942_0132 at 133.212 kb on + strand, within Synpcc7942_0132 at 133.212 kb on - strand, within Synpcc7942_0132 at 133.228 kb on + strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.236 kb on - strand, within Synpcc7942_0132 at 133.248 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.257 kb on + strand, within Synpcc7942_0132 at 133.258 kb on + strand, within Synpcc7942_0132 at 133.266 kb on + strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.267 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.269 kb on - strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.283 kb on + strand, within Synpcc7942_0132 at 133.291 kb on - strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.293 kb on + strand, within Synpcc7942_0132 at 133.307 kb on + strand, within Synpcc7942_0132 at 133.308 kb on - strand, within Synpcc7942_0132 at 133.317 kb on - strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.321 kb on + strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.329 kb on - strand, within Synpcc7942_0132 at 133.339 kb on - strand, within Synpcc7942_0132 at 133.375 kb on - strand, within Synpcc7942_0132 at 133.381 kb on - strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.386 kb on + strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.394 kb on - strand, within Synpcc7942_0132 at 133.401 kb on - strand, within Synpcc7942_0132 at 133.435 kb on + strand, within Synpcc7942_0132 at 133.461 kb on - strand, within Synpcc7942_0132 at 133.481 kb on - strand, within Synpcc7942_0132 at 133.487 kb on + strand, within Synpcc7942_0132 at 133.564 kb on + strand, within Synpcc7942_0132 at 133.570 kb on + strand, within Synpcc7942_0132 at 133.571 kb on + strand, within Synpcc7942_0132 at 133.579 kb on - strand, within Synpcc7942_0132 at 133.579 kb on - strand, within Synpcc7942_0132 at 133.651 kb on - strand at 133.651 kb on - strand, within Synpcc7942_0132 at 133.666 kb on + strand at 133.666 kb on + strand at 133.666 kb on + strand at 133.666 kb on + strand at 133.684 kb on - strand at 133.709 kb on - strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.713 kb on + strand at 133.714 kb on - strand at 133.716 kb on - strand at 133.730 kb on - strand at 133.743 kb on + strand at 133.751 kb on - strand at 133.760 kb on + strand at 133.786 kb on + strand at 133.786 kb on + strand at 133.794 kb on - strand at 133.794 kb on - strand at 133.816 kb on + strand at 133.824 kb on - strand at 133.833 kb on - strand at 133.854 kb on - strand at 133.854 kb on - strand at 133.889 kb on + strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.897 kb on - strand at 133.918 kb on - strand at 133.923 kb on - strand at 133.941 kb on - strand at 134.072 kb on + strand, within Synpcc7942_0133 at 134.072 kb on + strand, within Synpcc7942_0133 at 134.072 kb on + strand, within Synpcc7942_0133 at 134.080 kb on - strand, within Synpcc7942_0133 at 134.080 kb on - strand, within Synpcc7942_0133 at 134.108 kb on + strand, within Synpcc7942_0133 at 134.114 kb on - strand, within Synpcc7942_0133 at 134.114 kb on - strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.116 kb on + strand, within Synpcc7942_0133 at 134.118 kb on + strand, within Synpcc7942_0133 at 134.126 kb on - strand, within Synpcc7942_0133 at 134.126 kb on - strand, within Synpcc7942_0133 at 134.132 kb on + strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.184 kb on - strand, within Synpcc7942_0133 at 134.185 kb on - strand, within Synpcc7942_0133 at 134.200 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.210 kb on + strand, within Synpcc7942_0133 at 134.218 kb on - strand, within Synpcc7942_0133 at 134.243 kb on + strand, within Synpcc7942_0133 at 134.253 kb on + strand at 134.261 kb on - strand, within Synpcc7942_0133 at 134.261 kb on - strand, within Synpcc7942_0133 at 134.261 kb on - strand, within Synpcc7942_0133 at 134.282 kb on + strand, within Synpcc7942_0133 at 134.290 kb on - strand, within Synpcc7942_0133 at 134.301 kb on + strand, within Synpcc7942_0133 at 134.330 kb on + strand, within Synpcc7942_0133 at 134.330 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.342 kb on + strand, within Synpcc7942_0133 at 134.386 kb on - strand, within Synpcc7942_0133 at 134.387 kb on - strand, within Synpcc7942_0133 at 134.429 kb on - strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.472 kb on + strand, within Synpcc7942_0133 at 134.480 kb on - strand, within Synpcc7942_0133 at 134.480 kb on - strand, within Synpcc7942_0133 at 134.500 kb on - strand, within Synpcc7942_0133 at 134.515 kb on + strand, within Synpcc7942_0133 at 134.523 kb on - strand, within Synpcc7942_0133 at 134.523 kb on - strand, within Synpcc7942_0133 at 134.528 kb on - strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on + strand, within Synpcc7942_0133 at 134.549 kb on - strand, within Synpcc7942_0133 at 134.557 kb on - strand, within Synpcc7942_0133 at 134.557 kb on - strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.563 kb on + strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.571 kb on - strand, within Synpcc7942_0133 at 134.583 kb on + strand, within Synpcc7942_0133 at 134.583 kb on + strand, within Synpcc7942_0133 at 134.591 kb on - strand at 134.591 kb on - strand, within Synpcc7942_0133 at 134.595 kb on + strand, within Synpcc7942_0133 at 134.676 kb on + strand at 134.676 kb on - strand at 134.698 kb on + strand at 134.698 kb on + strand at 134.699 kb on + strand at 134.705 kb on - strand at 134.706 kb on - strand at 134.706 kb on - strand at 134.707 kb on - strand at 134.707 kb on - strand at 134.707 kb on - strand at 134.756 kb on - strand at 134.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 132,915 - Synpcc7942_0132 0.18 -0.3 132,915 - Synpcc7942_0132 0.18 -2.2 132,916 - Synpcc7942_0132 0.19 +1.0 132,916 - Synpcc7942_0132 0.19 +1.4 132,916 - Synpcc7942_0132 0.19 +1.5 132,927 + Synpcc7942_0132 0.20 +0.2 132,935 - Synpcc7942_0132 0.20 -1.4 132,935 - Synpcc7942_0132 0.20 -1.4 132,935 - Synpcc7942_0132 0.20 -0.8 132,935 - Synpcc7942_0132 0.20 -1.3 132,949 - -0.5 132,956 - Synpcc7942_0132 0.22 -2.3 132,957 - Synpcc7942_0132 0.22 +0.0 132,972 - Synpcc7942_0132 0.24 +0.2 132,998 + Synpcc7942_0132 0.26 +0.5 133,006 - Synpcc7942_0132 0.27 +1.5 133,006 - +0.3 133,006 - Synpcc7942_0132 0.27 +0.1 133,008 + Synpcc7942_0132 0.27 +0.3 133,008 + Synpcc7942_0132 0.27 +1.7 133,016 - Synpcc7942_0132 0.28 -1.8 133,026 - -1.3 133,034 + Synpcc7942_0132 0.30 +0.8 133,041 - Synpcc7942_0132 0.30 -4.2 133,041 - Synpcc7942_0132 0.30 -0.4 133,048 + Synpcc7942_0132 0.31 -0.1 133,048 + Synpcc7942_0132 0.31 -0.1 133,101 + Synpcc7942_0132 0.36 -2.6 133,101 + Synpcc7942_0132 0.36 -0.3 133,109 - Synpcc7942_0132 0.37 -1.1 133,120 - Synpcc7942_0132 0.38 +0.0 133,120 - Synpcc7942_0132 0.38 +3.4 133,148 + Synpcc7942_0132 0.41 -0.5 133,148 + Synpcc7942_0132 0.41 -0.0 133,148 + Synpcc7942_0132 0.41 -1.7 133,156 - Synpcc7942_0132 0.41 -2.0 133,166 - Synpcc7942_0132 0.42 +0.2 133,166 - Synpcc7942_0132 0.42 +1.6 133,190 + -0.1 133,198 - Synpcc7942_0132 0.45 +0.8 133,212 + Synpcc7942_0132 0.47 -0.6 133,212 - Synpcc7942_0132 0.47 -0.5 133,228 + Synpcc7942_0132 0.48 -0.0 133,236 - Synpcc7942_0132 0.49 -1.1 133,236 - Synpcc7942_0132 0.49 -1.0 133,248 + Synpcc7942_0132 0.50 +1.6 133,257 + Synpcc7942_0132 0.51 -1.3 133,257 + Synpcc7942_0132 0.51 -0.1 133,257 + Synpcc7942_0132 0.51 -0.5 133,258 + Synpcc7942_0132 0.51 +1.4 133,266 + Synpcc7942_0132 0.52 -0.7 133,267 - Synpcc7942_0132 0.52 -2.2 133,267 - Synpcc7942_0132 0.52 -3.1 133,269 - Synpcc7942_0132 0.52 -3.0 133,269 - Synpcc7942_0132 0.52 +2.3 133,269 - Synpcc7942_0132 0.52 +0.3 133,283 + Synpcc7942_0132 0.54 -0.1 133,283 + Synpcc7942_0132 0.54 -0.3 133,291 - Synpcc7942_0132 0.54 +0.7 133,293 + Synpcc7942_0132 0.54 +0.3 133,293 + Synpcc7942_0132 0.54 +0.3 133,307 + Synpcc7942_0132 0.56 -1.8 133,308 - Synpcc7942_0132 0.56 +1.9 133,317 - Synpcc7942_0132 0.57 -0.8 133,321 + Synpcc7942_0132 0.57 +0.5 133,321 + Synpcc7942_0132 0.57 -0.5 133,329 - Synpcc7942_0132 0.58 -0.0 133,329 - Synpcc7942_0132 0.58 -1.0 133,339 - Synpcc7942_0132 0.59 -2.2 133,375 - Synpcc7942_0132 0.62 -3.4 133,381 - Synpcc7942_0132 0.63 +0.3 133,386 + Synpcc7942_0132 0.63 +0.7 133,386 + Synpcc7942_0132 0.63 -2.0 133,394 - Synpcc7942_0132 0.64 +1.8 133,394 - Synpcc7942_0132 0.64 -3.8 133,394 - Synpcc7942_0132 0.64 -2.5 133,394 - Synpcc7942_0132 0.64 +0.6 133,401 - Synpcc7942_0132 0.65 -1.8 133,435 + Synpcc7942_0132 0.68 -0.8 133,461 - Synpcc7942_0132 0.70 -0.5 133,481 - Synpcc7942_0132 0.72 -2.3 133,487 + Synpcc7942_0132 0.73 +0.0 133,564 + Synpcc7942_0132 0.80 -0.3 133,570 + Synpcc7942_0132 0.81 -3.0 133,571 + Synpcc7942_0132 0.81 -3.5 133,579 - Synpcc7942_0132 0.82 +0.4 133,579 - Synpcc7942_0132 0.82 -2.0 133,651 - -0.2 133,651 - Synpcc7942_0132 0.89 -0.1 133,666 + +0.4 133,666 + +0.4 133,666 + -3.5 133,666 + -0.1 133,684 - -2.6 133,709 - -2.9 133,713 + -0.7 133,713 + -0.0 133,713 + +0.7 133,713 + +0.2 133,714 - -1.4 133,716 - +1.0 133,730 - -0.8 133,743 + +0.4 133,751 - -0.5 133,760 + -0.4 133,786 + +0.3 133,786 + +1.1 133,794 - -2.4 133,794 - -1.5 133,816 + +1.2 133,824 - -1.3 133,833 - -0.8 133,854 - -2.3 133,854 - +0.9 133,889 + -2.9 133,897 - -2.2 133,897 - +0.3 133,897 - -1.3 133,897 - -0.8 133,918 - -0.1 133,923 - -1.8 133,941 - +0.8 134,072 + Synpcc7942_0133 0.19 -3.2 134,072 + Synpcc7942_0133 0.19 -0.6 134,072 + Synpcc7942_0133 0.19 -2.3 134,080 - Synpcc7942_0133 0.20 -2.5 134,080 - Synpcc7942_0133 0.20 -1.0 134,108 + Synpcc7942_0133 0.23 -3.0 134,114 - Synpcc7942_0133 0.24 -1.3 134,114 - Synpcc7942_0133 0.24 -2.8 134,116 + Synpcc7942_0133 0.24 +1.5 134,116 + Synpcc7942_0133 0.24 -0.9 134,116 + Synpcc7942_0133 0.24 -1.1 134,118 + Synpcc7942_0133 0.24 -2.9 134,126 - Synpcc7942_0133 0.25 -2.3 134,126 - Synpcc7942_0133 0.25 -2.4 134,132 + Synpcc7942_0133 0.26 +0.1 134,184 - Synpcc7942_0133 0.32 +0.5 134,184 - Synpcc7942_0133 0.32 +0.8 134,184 - Synpcc7942_0133 0.32 -0.5 134,185 - Synpcc7942_0133 0.32 -1.7 134,200 + Synpcc7942_0133 0.34 -0.7 134,210 + Synpcc7942_0133 0.35 -3.4 134,210 + Synpcc7942_0133 0.35 +0.3 134,210 + Synpcc7942_0133 0.35 +0.2 134,210 + Synpcc7942_0133 0.35 -2.7 134,218 - Synpcc7942_0133 0.36 +0.6 134,243 + Synpcc7942_0133 0.39 +1.5 134,253 + -0.8 134,261 - Synpcc7942_0133 0.41 -1.7 134,261 - Synpcc7942_0133 0.41 -0.9 134,261 - Synpcc7942_0133 0.41 -1.5 134,282 + Synpcc7942_0133 0.44 -1.3 134,290 - Synpcc7942_0133 0.45 -2.5 134,301 + Synpcc7942_0133 0.46 -0.7 134,330 + Synpcc7942_0133 0.49 -1.3 134,330 + Synpcc7942_0133 0.49 -0.4 134,342 + Synpcc7942_0133 0.51 -2.2 134,342 + Synpcc7942_0133 0.51 -0.4 134,342 + Synpcc7942_0133 0.51 -2.9 134,386 - Synpcc7942_0133 0.56 -2.7 134,387 - Synpcc7942_0133 0.56 -0.8 134,429 - Synpcc7942_0133 0.61 -0.8 134,472 + Synpcc7942_0133 0.66 +0.7 134,472 + Synpcc7942_0133 0.66 +1.4 134,472 + Synpcc7942_0133 0.66 -1.5 134,480 - Synpcc7942_0133 0.67 -3.0 134,480 - Synpcc7942_0133 0.67 -0.6 134,500 - Synpcc7942_0133 0.70 +0.3 134,515 + Synpcc7942_0133 0.71 -0.3 134,523 - Synpcc7942_0133 0.72 -1.7 134,523 - Synpcc7942_0133 0.72 -3.2 134,528 - Synpcc7942_0133 0.73 -0.6 134,549 + Synpcc7942_0133 0.75 -1.5 134,549 + Synpcc7942_0133 0.75 -1.2 134,549 + Synpcc7942_0133 0.75 -2.1 134,549 - Synpcc7942_0133 0.75 -1.1 134,557 - Synpcc7942_0133 0.76 -1.8 134,557 - Synpcc7942_0133 0.76 -0.1 134,563 + Synpcc7942_0133 0.77 -0.9 134,563 + Synpcc7942_0133 0.77 -2.0 134,563 + Synpcc7942_0133 0.77 -1.7 134,563 + Synpcc7942_0133 0.77 -1.1 134,563 + Synpcc7942_0133 0.77 -1.6 134,571 - Synpcc7942_0133 0.78 -0.6 134,571 - Synpcc7942_0133 0.78 -0.9 134,571 - Synpcc7942_0133 0.78 -3.2 134,571 - Synpcc7942_0133 0.78 -1.7 134,571 - Synpcc7942_0133 0.78 -0.9 134,571 - Synpcc7942_0133 0.78 -0.9 134,571 - Synpcc7942_0133 0.78 -1.1 134,571 - Synpcc7942_0133 0.78 -1.5 134,571 - Synpcc7942_0133 0.78 -1.0 134,583 + Synpcc7942_0133 0.80 -1.5 134,583 + Synpcc7942_0133 0.80 -3.9 134,591 - -1.5 134,591 - Synpcc7942_0133 0.80 -1.9 134,595 + Synpcc7942_0133 0.81 -2.5 134,676 + -3.1 134,676 - -1.2 134,698 + -0.3 134,698 + -4.3 134,699 + -2.0 134,705 - -2.5 134,706 - -3.2 134,706 - -0.2 134,707 - -1.6 134,707 - -1.2 134,707 - -2.5 134,756 - +0.8 134,760 + -4.7
Or see this region's nucleotide sequence