Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0100

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyk2 and Synpcc7942_0099 are separated by 115 nucleotidesSynpcc7942_0099 and Synpcc7942_0100 overlap by 4 nucleotidesSynpcc7942_0100 and ndbA are separated by 176 nucleotides Synpcc7942_0098: pyk2 - pyruvate kinase, at 98,302 to 100,086 pyk2 Synpcc7942_0099: Synpcc7942_0099 - hypothetical protein, at 100,202 to 100,531 _0099 Synpcc7942_0100: Synpcc7942_0100 - hypothetical protein, at 100,528 to 101,082 _0100 Synpcc7942_0101: ndbA - type 2 NADH dehydrogenase, at 101,259 to 102,593 ndbA Position (kb) 100 101 102Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 100.153 kb on - strandat 100.167 kb on + strandat 100.194 kb on + strandat 100.248 kb on + strand, within Synpcc7942_0099at 100.250 kb on + strand, within Synpcc7942_0099at 100.257 kb on - strand, within Synpcc7942_0099at 100.260 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.281 kb on + strand, within Synpcc7942_0099at 100.288 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.289 kb on - strand, within Synpcc7942_0099at 100.349 kb on + strand, within Synpcc7942_0099at 100.388 kb on + strand, within Synpcc7942_0099at 100.388 kb on + strand, within Synpcc7942_0099at 100.402 kb on + strand, within Synpcc7942_0099at 100.407 kb on + strand, within Synpcc7942_0099at 100.408 kb on - strand, within Synpcc7942_0099at 100.410 kb on - strand, within Synpcc7942_0099at 100.415 kb on - strand, within Synpcc7942_0099at 100.430 kb on + strand, within Synpcc7942_0099at 100.443 kb on - strand, within Synpcc7942_0099at 100.449 kb on - strand, within Synpcc7942_0099at 100.487 kb on + strand, within Synpcc7942_0099at 100.534 kb on - strandat 100.539 kb on - strandat 100.596 kb on - strand, within Synpcc7942_0100at 100.596 kb on - strand, within Synpcc7942_0100at 100.617 kb on - strand, within Synpcc7942_0100at 100.617 kb on - strand, within Synpcc7942_0100at 100.617 kb on - strand, within Synpcc7942_0100at 100.617 kb on - strand, within Synpcc7942_0100at 100.627 kb on - strand, within Synpcc7942_0100at 100.644 kb on - strand, within Synpcc7942_0100at 100.644 kb on - strand, within Synpcc7942_0100at 100.652 kb on - strand, within Synpcc7942_0100at 100.662 kb on - strand, within Synpcc7942_0100at 100.677 kb on + strand, within Synpcc7942_0100at 100.689 kb on + strand, within Synpcc7942_0100at 100.708 kb on + strand, within Synpcc7942_0100at 100.716 kb on - strand, within Synpcc7942_0100at 100.727 kb on + strand, within Synpcc7942_0100at 100.727 kb on + strand, within Synpcc7942_0100at 100.727 kb on + strand, within Synpcc7942_0100at 100.735 kb on - strand, within Synpcc7942_0100at 100.759 kb on + strand, within Synpcc7942_0100at 100.784 kb on + strand, within Synpcc7942_0100at 100.784 kb on + strand, within Synpcc7942_0100at 100.784 kb on + strand, within Synpcc7942_0100at 100.812 kb on + strand, within Synpcc7942_0100at 100.815 kb on - strand, within Synpcc7942_0100at 100.869 kb on + strand, within Synpcc7942_0100at 100.869 kb on + strand, within Synpcc7942_0100at 100.872 kb on - strand, within Synpcc7942_0100at 100.877 kb on - strand, within Synpcc7942_0100at 100.897 kb on + strand, within Synpcc7942_0100at 100.897 kb on + strand, within Synpcc7942_0100at 100.897 kb on + strand, within Synpcc7942_0100at 100.905 kb on - strand, within Synpcc7942_0100at 100.905 kb on - strand, within Synpcc7942_0100at 100.905 kb on - strand, within Synpcc7942_0100at 100.927 kb on + strand, within Synpcc7942_0100at 100.927 kb on + strand, within Synpcc7942_0100at 100.940 kb on - strand, within Synpcc7942_0100at 100.943 kb on + strand, within Synpcc7942_0100at 100.943 kb on + strand, within Synpcc7942_0100at 100.956 kb on - strand, within Synpcc7942_0100at 101.033 kb on + strandat 101.042 kb on + strandat 101.055 kb on + strandat 101.055 kb on - strandat 101.100 kb on + strandat 101.100 kb on + strandat 101.108 kb on - strandat 101.108 kb on - strandat 101.108 kb on - strandat 101.111 kb on + strandat 101.111 kb on + strandat 101.111 kb on + strandat 101.111 kb on + strandat 101.149 kb on + strandat 101.149 kb on + strandat 101.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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100,153 - +2.0
100,167 + +2.5
100,194 + -0.5
100,248 + Synpcc7942_0099 0.14 +1.9
100,250 + Synpcc7942_0099 0.15 +3.3
100,257 - Synpcc7942_0099 0.17 +0.8
100,260 + Synpcc7942_0099 0.18 -1.3
100,281 + Synpcc7942_0099 0.24 +1.0
100,281 + Synpcc7942_0099 0.24 -1.2
100,281 + Synpcc7942_0099 0.24 -1.3
100,281 + Synpcc7942_0099 0.24 +2.2
100,281 + Synpcc7942_0099 0.24 -1.2
100,281 + Synpcc7942_0099 0.24 +2.8
100,288 - Synpcc7942_0099 0.26 +1.7
100,289 - Synpcc7942_0099 0.26 +0.9
100,289 - Synpcc7942_0099 0.26 -0.5
100,289 - Synpcc7942_0099 0.26 +0.1
100,289 - Synpcc7942_0099 0.26 +0.8
100,289 - Synpcc7942_0099 0.26 +0.6
100,289 - Synpcc7942_0099 0.26 -0.9
100,289 - Synpcc7942_0099 0.26 -0.1
100,289 - Synpcc7942_0099 0.26 -0.5
100,289 - Synpcc7942_0099 0.26 +2.0
100,289 - Synpcc7942_0099 0.26 +1.3
100,289 - Synpcc7942_0099 0.26 +0.9
100,289 - Synpcc7942_0099 0.26 +0.6
100,289 - Synpcc7942_0099 0.26 +1.8
100,289 - Synpcc7942_0099 0.26 -0.7
100,349 + Synpcc7942_0099 0.45 +0.7
100,388 + Synpcc7942_0099 0.56 +0.1
100,388 + Synpcc7942_0099 0.56 -4.2
100,402 + Synpcc7942_0099 0.61 -3.0
100,407 + Synpcc7942_0099 0.62 +0.5
100,408 - Synpcc7942_0099 0.62 -0.2
100,410 - Synpcc7942_0099 0.63 +0.5
100,415 - Synpcc7942_0099 0.65 -0.6
100,430 + Synpcc7942_0099 0.69 +1.6
100,443 - Synpcc7942_0099 0.73 +1.2
100,449 - Synpcc7942_0099 0.75 +2.4
100,487 + Synpcc7942_0099 0.86 -1.1
100,534 - +0.3
100,539 - +1.5
100,596 - Synpcc7942_0100 0.12 +2.6
100,596 - Synpcc7942_0100 0.12 +0.8
100,617 - Synpcc7942_0100 0.16 +0.5
100,617 - Synpcc7942_0100 0.16 +0.2
100,617 - Synpcc7942_0100 0.16 +2.2
100,617 - Synpcc7942_0100 0.16 +1.3
100,627 - Synpcc7942_0100 0.18 -0.2
100,644 - Synpcc7942_0100 0.21 +1.7
100,644 - Synpcc7942_0100 0.21 +2.4
100,652 - Synpcc7942_0100 0.22 +1.8
100,662 - Synpcc7942_0100 0.24 -3.2
100,677 + Synpcc7942_0100 0.27 -4.0
100,689 + Synpcc7942_0100 0.29 +0.3
100,708 + Synpcc7942_0100 0.32 +2.3
100,716 - Synpcc7942_0100 0.34 +1.7
100,727 + Synpcc7942_0100 0.36 +1.2
100,727 + Synpcc7942_0100 0.36 -0.1
100,727 + Synpcc7942_0100 0.36 +2.3
100,735 - Synpcc7942_0100 0.37 +0.6
100,759 + Synpcc7942_0100 0.42 -0.7
100,784 + Synpcc7942_0100 0.46 +0.7
100,784 + Synpcc7942_0100 0.46 -1.5
100,784 + Synpcc7942_0100 0.46 +2.1
100,812 + Synpcc7942_0100 0.51 +1.1
100,815 - Synpcc7942_0100 0.52 -2.0
100,869 + Synpcc7942_0100 0.61 +0.2
100,869 + Synpcc7942_0100 0.61 +2.5
100,872 - Synpcc7942_0100 0.62 +1.5
100,877 - Synpcc7942_0100 0.63 +2.2
100,897 + Synpcc7942_0100 0.66 -0.1
100,897 + Synpcc7942_0100 0.66 +1.7
100,897 + Synpcc7942_0100 0.66 +0.9
100,905 - Synpcc7942_0100 0.68 +1.1
100,905 - Synpcc7942_0100 0.68 -5.0
100,905 - Synpcc7942_0100 0.68 -2.5
100,927 + Synpcc7942_0100 0.72 +1.9
100,927 + Synpcc7942_0100 0.72 +2.0
100,940 - Synpcc7942_0100 0.74 +2.3
100,943 + Synpcc7942_0100 0.75 +1.8
100,943 + Synpcc7942_0100 0.75 -0.1
100,956 - Synpcc7942_0100 0.77 +1.3
101,033 + +2.1
101,042 + -1.8
101,055 + -0.8
101,055 - +1.1
101,100 + +0.9
101,100 + -2.2
101,108 - +0.5
101,108 - +1.3
101,108 - -2.8
101,111 + +0.0
101,111 + +2.0
101,111 + +1.6
101,111 + -1.4
101,149 + -2.7
101,149 + -1.7
101,156 + -1.6

Or see this region's nucleotide sequence