Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4473

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4472 and Pf6N2E2_4473 overlap by 4 nucleotidesPf6N2E2_4473 and Pf6N2E2_4474 are separated by 81 nucleotidesPf6N2E2_4474 and Pf6N2E2_4475 are separated by 194 nucleotidesPf6N2E2_4475 and Pf6N2E2_4476 are separated by 35 nucleotides Pf6N2E2_4472 - ABC-type multidrug transport system, permease component, at 5,204,548 to 5,207,271 _4472 Pf6N2E2_4473 - HlyD family secretion protein, at 5,207,268 to 5,208,233 _4473 Pf6N2E2_4474 - FIG006231: RNA-binding protein, at 5,208,315 to 5,208,764 _4474 Pf6N2E2_4475 - FIG00953390: hypothetical protein, at 5,208,959 to 5,209,105 _4475 Pf6N2E2_4476 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 5,209,141 to 5,209,746 _4476 Position (kb) 5207 5208 5209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5206.575 kb on + strand, within Pf6N2E2_4472at 5206.576 kb on - strand, within Pf6N2E2_4472at 5206.576 kb on - strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.661 kb on + strand, within Pf6N2E2_4472at 5206.662 kb on - strand, within Pf6N2E2_4472at 5206.662 kb on - strand, within Pf6N2E2_4472at 5206.714 kb on + strand, within Pf6N2E2_4472at 5206.714 kb on + strand, within Pf6N2E2_4472at 5206.714 kb on + strand, within Pf6N2E2_4472at 5206.714 kb on + strand, within Pf6N2E2_4472at 5206.715 kb on - strand, within Pf6N2E2_4472at 5206.715 kb on - strand, within Pf6N2E2_4472at 5206.715 kb on - strand, within Pf6N2E2_4472at 5206.982 kb on + strand, within Pf6N2E2_4472at 5207.071 kb on + strandat 5207.072 kb on - strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.307 kb on + strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.308 kb on - strandat 5207.311 kb on + strandat 5207.312 kb on - strandat 5207.370 kb on + strand, within Pf6N2E2_4473at 5207.370 kb on + strand, within Pf6N2E2_4473at 5207.371 kb on - strand, within Pf6N2E2_4473at 5207.371 kb on - strand, within Pf6N2E2_4473at 5207.371 kb on - strand, within Pf6N2E2_4473at 5207.551 kb on + strand, within Pf6N2E2_4473at 5207.551 kb on + strand, within Pf6N2E2_4473at 5207.551 kb on + strand, within Pf6N2E2_4473at 5207.551 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.563 kb on + strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.564 kb on - strand, within Pf6N2E2_4473at 5207.682 kb on + strand, within Pf6N2E2_4473at 5207.682 kb on + strand, within Pf6N2E2_4473at 5207.682 kb on + strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.683 kb on - strand, within Pf6N2E2_4473at 5207.746 kb on - strand, within Pf6N2E2_4473at 5207.828 kb on - strand, within Pf6N2E2_4473at 5208.215 kb on + strandat 5208.215 kb on + strandat 5208.215 kb on + strandat 5208.215 kb on + strandat 5208.215 kb on + strandat 5208.215 kb on + strandat 5208.216 kb on - strandat 5208.216 kb on - strandat 5208.252 kb on - strandat 5208.253 kb on + strandat 5208.253 kb on + strandat 5208.253 kb on + strandat 5208.254 kb on - strandat 5208.254 kb on - strandat 5208.353 kb on + strandat 5208.427 kb on + strand, within Pf6N2E2_4474at 5208.428 kb on - strand, within Pf6N2E2_4474at 5208.428 kb on - strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.520 kb on + strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.521 kb on - strand, within Pf6N2E2_4474at 5208.616 kb on + strand, within Pf6N2E2_4474at 5208.616 kb on + strand, within Pf6N2E2_4474at 5208.617 kb on - strand, within Pf6N2E2_4474at 5208.670 kb on + strand, within Pf6N2E2_4474at 5208.670 kb on + strand, within Pf6N2E2_4474at 5208.670 kb on + strand, within Pf6N2E2_4474at 5208.670 kb on + strand, within Pf6N2E2_4474at 5208.671 kb on - strand, within Pf6N2E2_4474at 5208.671 kb on - strand, within Pf6N2E2_4474at 5208.726 kb on + strandat 5208.757 kb on + strandat 5208.758 kb on - strandat 5208.771 kb on + strandat 5208.772 kb on - strandat 5208.810 kb on - strandat 5208.907 kb on + strandat 5208.937 kb on + strandat 5208.938 kb on - strandat 5208.938 kb on - strandat 5208.938 kb on - strandat 5209.153 kb on - strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.154 kb on + strandat 5209.155 kb on - strandat 5209.155 kb on - strandat 5209.155 kb on - strandat 5209.155 kb on - strandat 5209.155 kb on - strandat 5209.155 kb on - strandat 5209.189 kb on + strandat 5209.189 kb on + strandat 5209.190 kb on - strandat 5209.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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5,206,575 + Pf6N2E2_4472 0.74 +0.3
5,206,576 - Pf6N2E2_4472 0.74 -0.0
5,206,576 - Pf6N2E2_4472 0.74 -0.7
5,206,661 + Pf6N2E2_4472 0.78 +1.4
5,206,661 + Pf6N2E2_4472 0.78 -0.2
5,206,661 + Pf6N2E2_4472 0.78 +0.9
5,206,661 + Pf6N2E2_4472 0.78 +0.5
5,206,661 + Pf6N2E2_4472 0.78 -0.5
5,206,661 + Pf6N2E2_4472 0.78 +0.1
5,206,662 - Pf6N2E2_4472 0.78 +0.7
5,206,662 - Pf6N2E2_4472 0.78 +0.9
5,206,714 + Pf6N2E2_4472 0.80 -0.4
5,206,714 + Pf6N2E2_4472 0.80 -1.0
5,206,714 + Pf6N2E2_4472 0.80 -0.1
5,206,714 + Pf6N2E2_4472 0.80 -0.5
5,206,715 - Pf6N2E2_4472 0.80 +0.9
5,206,715 - Pf6N2E2_4472 0.80 +0.5
5,206,715 - Pf6N2E2_4472 0.80 -0.8
5,206,982 + Pf6N2E2_4472 0.89 +0.4
5,207,071 + +0.7
5,207,072 - -0.7
5,207,307 + -0.2
5,207,307 + -0.2
5,207,307 + +0.3
5,207,307 + -0.6
5,207,307 + -0.2
5,207,307 + -0.5
5,207,307 + -0.8
5,207,307 + -0.6
5,207,308 - -0.1
5,207,308 - -1.1
5,207,308 - -0.5
5,207,308 - -0.3
5,207,308 - +0.5
5,207,308 - -0.3
5,207,308 - +0.8
5,207,308 - +0.2
5,207,308 - +0.0
5,207,311 + -0.3
5,207,312 - +0.1
5,207,370 + Pf6N2E2_4473 0.11 -0.1
5,207,370 + Pf6N2E2_4473 0.11 +0.2
5,207,371 - Pf6N2E2_4473 0.11 +0.9
5,207,371 - Pf6N2E2_4473 0.11 -0.5
5,207,371 - Pf6N2E2_4473 0.11 -0.3
5,207,551 + Pf6N2E2_4473 0.29 -0.7
5,207,551 + Pf6N2E2_4473 0.29 -0.9
5,207,551 + Pf6N2E2_4473 0.29 -0.6
5,207,551 + Pf6N2E2_4473 0.29 +0.1
5,207,563 + Pf6N2E2_4473 0.31 +0.5
5,207,563 + Pf6N2E2_4473 0.31 -0.2
5,207,563 + Pf6N2E2_4473 0.31 -0.9
5,207,563 + Pf6N2E2_4473 0.31 +0.6
5,207,563 + Pf6N2E2_4473 0.31 +0.6
5,207,563 + Pf6N2E2_4473 0.31 -0.4
5,207,563 + Pf6N2E2_4473 0.31 -0.1
5,207,564 - Pf6N2E2_4473 0.31 +0.2
5,207,564 - Pf6N2E2_4473 0.31 +0.3
5,207,564 - Pf6N2E2_4473 0.31 -0.4
5,207,564 - Pf6N2E2_4473 0.31 -0.2
5,207,564 - Pf6N2E2_4473 0.31 -0.8
5,207,564 - Pf6N2E2_4473 0.31 -0.6
5,207,564 - Pf6N2E2_4473 0.31 +0.6
5,207,564 - Pf6N2E2_4473 0.31 +0.4
5,207,682 + Pf6N2E2_4473 0.43 +0.3
5,207,682 + Pf6N2E2_4473 0.43 +0.1
5,207,682 + Pf6N2E2_4473 0.43 +1.2
5,207,683 - Pf6N2E2_4473 0.43 +0.3
5,207,683 - Pf6N2E2_4473 0.43 +2.4
5,207,683 - Pf6N2E2_4473 0.43 +0.5
5,207,683 - Pf6N2E2_4473 0.43 -0.2
5,207,683 - Pf6N2E2_4473 0.43 +0.9
5,207,683 - Pf6N2E2_4473 0.43 +0.4
5,207,746 - Pf6N2E2_4473 0.49 -1.3
5,207,828 - Pf6N2E2_4473 0.58 +0.2
5,208,215 + -0.5
5,208,215 + -0.5
5,208,215 + -0.9
5,208,215 + +0.2
5,208,215 + +0.2
5,208,215 + +0.8
5,208,216 - +0.4
5,208,216 - -0.1
5,208,252 - +0.7
5,208,253 + +0.5
5,208,253 + -1.4
5,208,253 + +0.7
5,208,254 - -1.9
5,208,254 - +0.3
5,208,353 + -1.2
5,208,427 + Pf6N2E2_4474 0.25 +0.1
5,208,428 - Pf6N2E2_4474 0.25 +0.2
5,208,428 - Pf6N2E2_4474 0.25 +0.4
5,208,520 + Pf6N2E2_4474 0.46 +0.5
5,208,520 + Pf6N2E2_4474 0.46 +0.1
5,208,520 + Pf6N2E2_4474 0.46 +0.1
5,208,520 + Pf6N2E2_4474 0.46 -0.3
5,208,520 + Pf6N2E2_4474 0.46 -0.2
5,208,520 + Pf6N2E2_4474 0.46 +1.1
5,208,520 + Pf6N2E2_4474 0.46 -0.7
5,208,520 + Pf6N2E2_4474 0.46 +0.2
5,208,521 - Pf6N2E2_4474 0.46 +0.2
5,208,521 - Pf6N2E2_4474 0.46 +0.6
5,208,521 - Pf6N2E2_4474 0.46 -0.1
5,208,521 - Pf6N2E2_4474 0.46 -0.2
5,208,521 - Pf6N2E2_4474 0.46 +0.2
5,208,521 - Pf6N2E2_4474 0.46 +0.5
5,208,521 - Pf6N2E2_4474 0.46 +0.4
5,208,616 + Pf6N2E2_4474 0.67 +0.5
5,208,616 + Pf6N2E2_4474 0.67 -0.4
5,208,617 - Pf6N2E2_4474 0.67 +0.6
5,208,670 + Pf6N2E2_4474 0.79 +0.2
5,208,670 + Pf6N2E2_4474 0.79 +0.5
5,208,670 + Pf6N2E2_4474 0.79 +0.2
5,208,670 + Pf6N2E2_4474 0.79 +0.6
5,208,671 - Pf6N2E2_4474 0.79 +0.8
5,208,671 - Pf6N2E2_4474 0.79 -0.8
5,208,726 + -0.3
5,208,757 + +0.7
5,208,758 - -2.3
5,208,771 + -0.7
5,208,772 - +1.0
5,208,810 - +0.8
5,208,907 + -0.6
5,208,937 + -0.2
5,208,938 - +0.6
5,208,938 - +0.7
5,208,938 - +0.7
5,209,153 - -0.2
5,209,154 + -2.9
5,209,154 + -1.1
5,209,154 + -0.9
5,209,154 + -0.9
5,209,154 + -0.7
5,209,154 + -0.2
5,209,154 + -0.8
5,209,154 + -0.4
5,209,155 - -1.4
5,209,155 - -0.4
5,209,155 - -1.2
5,209,155 - -0.8
5,209,155 - -2.2
5,209,155 - -0.8
5,209,189 + -1.5
5,209,189 + -2.1
5,209,190 - +0.7
5,209,190 - -1.1

Or see this region's nucleotide sequence