Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19190

Experiment: CDM1 without Cyanocobalamin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cyanocobalamin
2,079,280	+				+0.4
2,079,280	+				-0.3
2,079,280	+				+0.0
2,079,308	-				-0.2
2,079,308	-				+0.6
2,079,308	-				-0.9
2,079,313	-				+0.4
2,079,318	-				-0.9
2,079,318	-				-0.2
2,079,319	+				+0.5
2,079,323	-				+0.1
2,079,325	-				+0.5
2,079,325	-				-0.4
2,079,327	+				-0.4
2,079,327	+				-1.7
2,079,327	+				+0.7
2,079,327	+				+0.1
2,079,327	+				+1.1
2,079,327	+				-0.1
2,079,327	+				+1.1
2,079,327	+				+0.7
2,079,327	+				+0.1
2,079,335	-				+0.1
2,079,335	-				-0.8
2,079,335	-				-0.2
2,079,335	-				+0.2
2,079,335	-				+0.4
2,079,335	-				-0.7
2,079,337	-				+0.1
2,079,337	-				+0.9
2,079,337	-				-0.5
2,079,355	-				-0.1
2,079,380	+				+0.2
2,079,380	+				+0.8
2,079,388	+				-1.2
2,079,396	-				+0.5
2,079,398	+				+2.5
2,079,398	+				+1.0
2,079,398	+				-0.3
2,079,406	+				+0.5
2,079,406	-				-0.2
2,079,406	-				+0.2
2,079,406	-				-0.3
2,079,406	-				-1.9
2,079,406	-				+1.2
2,079,406	-				-0.5
2,079,406	-				-0.1
2,079,406	-				-0.0
2,079,406	-				+0.3
2,079,414	-				+1.0
2,080,111	+				+0.5
2,080,111	+				+0.8
2,080,111	+				+1.7
2,080,119	-				+0.6
2,080,119	-				-3.0
2,080,119	-				-0.6
2,080,119	-				+0.2
2,080,133	+				-0.2
2,080,141	-				+0.7
2,080,151	-				-0.0
2,080,161	-				-1.1
2,080,161	-				-0.8
2,080,162	-				+0.6
2,080,168	+				+0.7
2,080,175	+				+0.9
2,080,183	-				-0.6
2,080,183	-				+0.1
2,080,183	-				+1.4
2,080,187	+				-1.4
2,080,195	-				-0.5
2,080,195	-				+0.6
2,080,212	+				+0.7
2,080,236	+				-0.2
2,080,239	-				+0.2
2,080,240	+				-0.6
2,080,259	-				+0.8
2,080,269	-				+0.7
2,080,302	+				-2.9
2,080,356	+				-0.8
2,080,357	+				+0.1
2,080,384	+				-1.9
2,080,386	+				-2.8
2,080,403	+		BBR_RS19190	0.11	+0.1
2,080,426	+		BBR_RS19190	0.13	-1.8
2,080,429	+		BBR_RS19190	0.13	-2.5
2,080,485	-		BBR_RS19190	0.18	-1.3
2,080,485	-		BBR_RS19190	0.18	-1.9
2,080,582	+		BBR_RS19190	0.26	-0.6
2,080,583	-		BBR_RS19190	0.26	-1.9
2,080,589	-		BBR_RS19190	0.26	-0.8
2,080,596	-		BBR_RS19190	0.27	+0.8
2,080,635	+		BBR_RS19190	0.30	-0.8
2,080,644	-		BBR_RS19190	0.31	-1.7
2,080,651	-		BBR_RS19190	0.31	-1.9
2,080,686	-		BBR_RS19190	0.34	-0.4
2,080,687	+		BBR_RS19190	0.34	-0.4
2,080,695	-		BBR_RS19190	0.35	+0.1
2,080,697	+		BBR_RS19190	0.35	-1.4
2,080,729	-		BBR_RS19190	0.38	-2.3
2,080,752	+		BBR_RS19190	0.40	-1.1
2,080,752	+		BBR_RS19190	0.40	-0.2
2,080,760	-		BBR_RS19190	0.40	+0.1
2,080,778	+		BBR_RS19190	0.42	-2.8
2,080,800	-		BBR_RS19190	0.44	-0.9
2,080,800	-		BBR_RS19190	0.44	+2.4
2,080,823	+		BBR_RS19190	0.45	-0.4
2,080,858	+		BBR_RS19190	0.48	+0.1
2,080,866	-		BBR_RS19190	0.49	+0.1
2,080,866	-		BBR_RS19190	0.49	+0.4
2,080,870	+		BBR_RS19190	0.49	-0.8
2,080,884	-		BBR_RS19190	0.50	-2.6
2,080,928	-		BBR_RS19190	0.54	-1.2
2,081,055	+		BBR_RS19190	0.64	-1.8
2,081,062	+		BBR_RS19190	0.65	-0.9
2,081,124	+		BBR_RS19190	0.70	-1.1
2,081,124	+		BBR_RS19190	0.70	-0.4
2,081,132	-		BBR_RS19190	0.70	-3.0
2,081,132	-		BBR_RS19190	0.70	-2.8
2,081,148	-		BBR_RS19190	0.72	-0.4
2,081,152	+		BBR_RS19190	0.72	-0.2
2,081,167	-		BBR_RS19190	0.73	-1.9
2,081,177	-		BBR_RS19190	0.74	-1.7
2,081,177	-		BBR_RS19190	0.74	-1.9
2,081,191	-		BBR_RS19190	0.75	-2.1
2,081,193	+		BBR_RS19190	0.75	-1.6
2,081,193	+		BBR_RS19190	0.75	-1.2
2,081,193	+		BBR_RS19190	0.75	-1.8
2,081,250	-		BBR_RS19190	0.80	+0.8
2,081,279	-		BBR_RS19190	0.82	-1.1
2,081,284	-		BBR_RS19190	0.83	-2.3
2,081,301	+		BBR_RS19190	0.84	-1.5
2,081,302	-		BBR_RS19190	0.84	-0.9
2,081,316	-		BBR_RS19190	0.85	-0.2
2,081,332	+		BBR_RS19190	0.87	-1.3
2,081,336	-		BBR_RS19190	0.87	-0.9
2,081,336	-		BBR_RS19190	0.87	+0.1
2,081,336	-		BBR_RS19190	0.87	-0.8
2,081,350	-		BBR_RS19190	0.88	-2.1
2,081,380	+				-0.6
2,081,388	-				+1.2
2,081,388	-				+1.3
2,081,400	-				+0.6
2,081,400	-				-2.9
2,081,400	-				-0.0
2,081,400	-				-0.4
2,081,400	-				+1.2
2,081,400	-				-0.4
2,081,428	+				-1.5
2,081,428	-				-3.6
2,081,428	-				-2.5
2,081,433	-				-2.9
2,081,460	-				-0.2
2,081,500	-				-2.3
2,081,523	+				-1.0
2,081,523	+				-2.0
2,081,536	-				-0.0
2,081,536	-				-0.2
2,081,536	-				-0.6
2,081,536	-				+0.8
2,081,537	-				+0.9
2,081,549	+				-0.2
2,081,551	+				+0.4
2,081,557	-				-0.3
2,081,557	-				+0.7
2,081,559	-				-0.2
2,081,559	-				+1.0
2,081,571	-				+0.1
2,081,590	-				+0.1
2,081,591	+				-0.2
2,081,595	+				-3.1
2,081,599	-				+1.2
2,081,599	-				-1.4
2,081,648	+				+0.6
2,081,660	+				+0.6
2,081,660	+				-0.2
2,081,660	+				+1.0
2,081,668	-				-0.5
2,081,668	-				+1.3
2,081,668	-				-0.2
2,081,675	-		BBR_RS19195	0.10	+0.1
2,081,686	-		BBR_RS19195	0.11	+0.6
2,081,696	-		BBR_RS19195	0.12	-0.1
2,081,696	-		BBR_RS19195	0.12	+0.7
2,081,698	+		BBR_RS19195	0.12	-0.4
2,081,699	+		BBR_RS19195	0.12	+0.3
2,081,707	-		BBR_RS19195	0.13	-0.4
2,081,713	+		BBR_RS19195	0.13	+0.2
2,081,726	+		BBR_RS19195	0.15	-3.1
2,081,727	+		BBR_RS19195	0.15	-1.0
2,081,730	-		BBR_RS19195	0.15	+0.1
2,081,731	+		BBR_RS19195	0.15	+0.0
2,081,731	+		BBR_RS19195	0.15	-2.0
2,081,732	-		BBR_RS19195	0.15	+0.2
2,081,739	+		BBR_RS19195	0.16	-0.8
2,081,740	-		BBR_RS19195	0.16	+0.4
2,081,740	-		BBR_RS19195	0.16	+0.1
2,081,740	-		BBR_RS19195	0.16	+0.5
2,081,740	-		BBR_RS19195	0.16	+0.6
2,081,812	+		BBR_RS19195	0.22	-0.1
2,081,815	+		BBR_RS19195	0.22	-1.3
2,081,815	+		BBR_RS19195	0.22	+0.2
2,081,823	-		BBR_RS19195	0.23	+0.7
2,081,833	+		BBR_RS19195	0.24	-0.9
2,081,833	+		BBR_RS19195	0.24	-0.1
2,081,847	+		BBR_RS19195	0.25	+1.7
2,081,847	+		BBR_RS19195	0.25	-0.7
2,081,855	-		BBR_RS19195	0.26	+0.6
2,081,855	-		BBR_RS19195	0.26	+0.1
2,081,855	-		BBR_RS19195	0.26	+1.1
2,081,855	-		BBR_RS19195	0.26	-0.3
2,081,861	+		BBR_RS19195	0.26	+0.2
2,081,862	+		BBR_RS19195	0.27	-0.4
2,081,862	+		BBR_RS19195	0.27	-0.5
2,081,862	+		BBR_RS19195	0.27	-0.5
2,081,862	+		BBR_RS19195	0.27	+0.8
2,081,870	-		BBR_RS19195	0.27	+0.9
2,081,870	-		BBR_RS19195	0.27	+1.3
2,081,870	-		BBR_RS19195	0.27	-0.2
2,081,872	+		BBR_RS19195	0.27	+1.2
2,081,872	+		BBR_RS19195	0.27	-1.3
2,081,906	+		BBR_RS19195	0.30	-2.2
2,081,914	+		BBR_RS19195	0.31	+0.9
2,081,914	+		BBR_RS19195	0.31	+0.4
2,081,925	+		BBR_RS19195	0.32	-0.4
2,081,933	-		BBR_RS19195	0.33	+1.2
2,081,933	-		BBR_RS19195	0.33	+0.9
2,081,933	-		BBR_RS19195	0.33	+0.5
2,081,933	-		BBR_RS19195	0.33	+0.3
2,081,935	+		BBR_RS19195	0.33	-0.6
2,081,938	+		BBR_RS19195	0.33	+0.1
2,081,951	-		BBR_RS19195	0.34	+0.3
2,081,951	-		BBR_RS19195	0.34	-1.6
2,081,963	+		BBR_RS19195	0.35	+1.4
2,081,963	+		BBR_RS19195	0.35	-0.7
2,081,963	+		BBR_RS19195	0.35	+0.6
2,081,971	-		BBR_RS19195	0.36	-1.1
2,081,971	-		BBR_RS19195	0.36	-0.2
2,081,971	-		BBR_RS19195	0.36	+0.0
2,081,999	-		BBR_RS19195	0.39	+0.9
2,081,999	-		BBR_RS19195	0.39	+0.1
2,082,010	+		BBR_RS19195	0.40	+0.1
2,082,026	-		BBR_RS19195	0.41	+1.7
2,082,037	+		BBR_RS19195	0.42	+1.3
2,082,053	+		BBR_RS19195	0.43	+0.8
2,082,053	+		BBR_RS19195	0.43	+1.1
2,082,054	+		BBR_RS19195	0.43	-0.5
2,082,062	-		BBR_RS19195	0.44	+1.1
2,082,079	+		BBR_RS19195	0.46	-0.1
2,082,085	+		BBR_RS19195	0.46	-1.8
2,082,092	+		BBR_RS19195	0.47	-0.2
2,082,092	+		BBR_RS19195	0.47	+1.1
2,082,100	-		BBR_RS19195	0.47	-0.3
2,082,100	-		BBR_RS19195	0.47	-0.4
2,082,100	-		BBR_RS19195	0.47	+0.7
2,082,102	+		BBR_RS19195	0.48	+0.4
2,082,102	+		BBR_RS19195	0.48	+0.2
2,082,102	+		BBR_RS19195	0.48	-0.3
2,082,102	+		BBR_RS19195	0.48	-0.6
2,082,105	-		BBR_RS19195	0.48	+0.5
2,082,105	-		BBR_RS19195	0.48	-0.0
2,082,166	-		BBR_RS19195	0.53	-1.1
2,082,171	+		BBR_RS19195	0.54	+0.5
2,082,178	+		BBR_RS19195	0.54	+0.3
2,082,187	-		BBR_RS19195	0.55	-0.3
2,082,189	+		BBR_RS19195	0.55	-0.2
2,082,189	-		BBR_RS19195	0.55	-2.5
2,082,191	-		BBR_RS19195	0.55	+0.8
2,082,206	-		BBR_RS19195	0.57	+0.7
2,082,206	-		BBR_RS19195	0.57	+0.4
2,082,206	-		BBR_RS19195	0.57	-0.4
2,082,215	+		BBR_RS19195	0.58	+0.6
2,082,215	+		BBR_RS19195	0.58	-0.2
2,082,215	-		BBR_RS19195	0.58	-0.0
2,082,223	-		BBR_RS19195	0.58	+0.7
2,082,223	-		BBR_RS19195	0.58	-0.7
2,082,223	-		BBR_RS19195	0.58	+1.1
2,082,225	+		BBR_RS19195	0.58	-1.2
2,082,243	-		BBR_RS19195	0.60	-0.4
2,082,244	+		BBR_RS19195	0.60	+0.1
2,082,244	+		BBR_RS19195	0.60	-2.4
2,082,250	+		BBR_RS19195	0.61	+1.2
2,082,252	+		BBR_RS19195	0.61	-0.3
2,082,252	-		BBR_RS19195	0.61	+0.4
2,082,252	-		BBR_RS19195	0.61	+0.3
2,082,252	-		BBR_RS19195	0.61	-0.2
2,082,252	-		BBR_RS19195	0.61	+0.2
2,082,252	-		BBR_RS19195	0.61	-0.5
2,082,260	-		BBR_RS19195	0.62	+0.9
2,082,273	-		BBR_RS19195	0.63	-0.8
2,082,300	+		BBR_RS19195	0.65	+0.7
2,082,308	-		BBR_RS19195	0.66	-0.4
2,082,321	-		BBR_RS19195	0.67	+0.0
2,082,321	-		BBR_RS19195	0.67	-0.6
2,082,321	-		BBR_RS19195	0.67	-0.3
2,082,321	-		BBR_RS19195	0.67	-0.4
2,082,345	+		BBR_RS19195	0.69	-0.4
2,082,376	-		BBR_RS19195	0.72	+0.1
2,082,421	+		BBR_RS19195	0.76	-0.3
2,082,427	-		BBR_RS19195	0.76	-1.4
2,082,434	+		BBR_RS19195	0.77	-0.2
2,082,434	+		BBR_RS19195	0.77	-0.0
2,082,442	-		BBR_RS19195	0.78	-0.5
2,082,442	-		BBR_RS19195	0.78	+0.6
2,082,442	-		BBR_RS19195	0.78	-0.4
2,082,442	-		BBR_RS19195	0.78	-0.9
2,082,442	-		BBR_RS19195	0.78	+0.3
2,082,442	-		BBR_RS19195	0.78	-1.2
2,082,442	-		BBR_RS19195	0.78	+0.4
2,082,442	-		BBR_RS19195	0.78	+0.3
2,082,442	-		BBR_RS19195	0.78	+0.7
2,082,443	-		BBR_RS19195	0.78	+0.2
2,082,452	+		BBR_RS19195	0.78	+0.3
2,082,452	-		BBR_RS19195	0.78	+0.5
2,082,460	-		BBR_RS19195	0.79	-1.4
2,082,479	+		BBR_RS19195	0.81	+1.1
2,082,491	+		BBR_RS19195	0.82	+0.2