Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19120

Experiment: CDM1 without Cyanocobalamin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cyanocobalamin
2,060,605	-				-1.3
2,060,620	+				-0.3
2,060,628	-				+0.9
2,060,628	-				+0.1
2,060,650	+		BBR_RS19110	0.13	-1.5
2,060,650	+		BBR_RS19110	0.13	+0.1
2,060,650	+		BBR_RS19110	0.13	-0.8
2,060,650	+		BBR_RS19110	0.13	-0.2
2,060,653	-		BBR_RS19110	0.13	-0.0
2,060,658	-		BBR_RS19110	0.14	+0.3
2,060,661	+		BBR_RS19110	0.15	+1.0
2,060,667	-		BBR_RS19110	0.16	+0.5
2,060,667	-		BBR_RS19110	0.16	+0.8
2,060,669	-		BBR_RS19110	0.16	+1.7
2,060,669	-		BBR_RS19110	0.16	-0.0
2,060,669	-		BBR_RS19110	0.16	+0.4
2,060,670	-		BBR_RS19110	0.16	-0.4
2,060,672	+		BBR_RS19110	0.17	+0.2
2,060,676	+		BBR_RS19110	0.17	-0.1
2,060,676	+		BBR_RS19110	0.17	-0.4
2,060,701	-		BBR_RS19110	0.22	+1.1
2,060,701	-		BBR_RS19110	0.22	+0.0
2,060,739	-		BBR_RS19110	0.28	+0.6
2,060,751	+		BBR_RS19110	0.31	+0.5
2,060,751	+		BBR_RS19110	0.31	-1.0
2,060,753	-		BBR_RS19110	0.31	+0.4
2,060,759	-		BBR_RS19110	0.32	+1.1
2,060,759	-		BBR_RS19110	0.32	+1.7
2,060,764	-		BBR_RS19110	0.33	+0.0
2,060,764	-		BBR_RS19110	0.33	+0.8
2,060,769	+		BBR_RS19110	0.34	-0.2
2,060,769	-		BBR_RS19110	0.34	+0.0
2,060,777	-		BBR_RS19110	0.35	-0.7
2,060,777	-		BBR_RS19110	0.35	+0.3
2,060,777	-		BBR_RS19110	0.35	-0.7
2,060,793	+		BBR_RS19110	0.38	+0.6
2,060,795	+		BBR_RS19110	0.38	+0.5
2,060,795	+		BBR_RS19110	0.38	-0.6
2,060,822	-		BBR_RS19110	0.43	-0.1
2,060,833	+		BBR_RS19110	0.45	+1.3
2,060,843	-		BBR_RS19110	0.47	-0.7
2,060,851	-		BBR_RS19110	0.48	+0.3
2,060,859	+		BBR_RS19110	0.50	+0.3
2,060,859	+		BBR_RS19110	0.50	+0.7
2,060,867	-		BBR_RS19110	0.51	+0.1
2,060,867	-		BBR_RS19110	0.51	+0.7
2,060,885	+		BBR_RS19110	0.54	-0.5
2,060,932	+		BBR_RS19110	0.62	+0.6
2,060,936	+		BBR_RS19110	0.63	-0.2
2,060,939	+		BBR_RS19110	0.64	-0.1
2,060,940	-		BBR_RS19110	0.64	+0.6
2,060,942	+		BBR_RS19110	0.64	+0.3
2,060,965	-		BBR_RS19110	0.68	+0.6
2,060,967	-		BBR_RS19110	0.69	+0.6
2,060,974	+		BBR_RS19110	0.70	+0.3
2,060,977	-		BBR_RS19110	0.70	+0.0
2,061,006	+		BBR_RS19110	0.75	-0.5
2,061,009	-		BBR_RS19110	0.76	+0.6
2,061,009	-		BBR_RS19110	0.76	-0.7
2,061,022	-		BBR_RS19110	0.78	+1.8
2,061,022	-		BBR_RS19110	0.78	+0.4
2,061,024	+		BBR_RS19110	0.79	+0.0
2,061,032	-		BBR_RS19110	0.80	-0.4
2,061,050	+		BBR_RS19110	0.83	+1.4
2,061,060	+		BBR_RS19110	0.85	-0.4
2,061,081	-		BBR_RS19110	0.89	-3.7
2,061,095	+				-1.0
2,061,095	+				+0.5
2,061,105	-				-0.6
2,061,107	-				+0.6
2,061,117	-				+0.1
2,061,131	+				+0.3
2,061,139	-				+0.5
2,061,163	+				+0.4
2,061,187	+				+0.1
2,061,199	+				-0.5
2,061,200	+				-0.8
2,061,205	-				+0.5
2,061,205	-				+1.0
2,061,222	+				-1.2
2,061,244	-				+0.9
2,061,246	-				+0.6
2,061,248	-				+0.7
2,061,262	-				-0.4
2,061,281	-				+0.6
2,061,285	+				-0.1
2,061,285	+				+0.1
2,061,285	+				+1.1
2,061,290	-				-0.6
2,061,293	-				+0.4
2,061,293	-				-0.6
2,061,295	+				+1.1
2,061,295	+				-0.0
2,061,295	+				+0.0
2,061,297	+				+1.2
2,061,303	-				+0.5
2,061,303	-				+0.3
2,061,308	-				+0.9
2,061,313	-				+0.9
2,061,315	-				+1.9
2,061,316	+				+0.4
2,061,317	-				-0.3
2,061,319	+				+0.1
2,061,327	-				+0.2
2,061,354	+				-0.3
2,061,366	+				-0.3
2,061,366	+				+0.2
2,061,369	+				+0.0
2,061,374	+				-1.4
2,061,375	-				+0.0
2,061,377	-				+1.3
2,061,377	-				+0.4
2,061,383	-				+0.6
2,061,401	+				-2.1
2,061,404	+		BBR_RS19115	0.10	-0.7
2,061,406	+		BBR_RS19115	0.11	-0.6
2,061,412	-		BBR_RS19115	0.14	+0.1
2,061,414	-		BBR_RS19115	0.15	+1.4
2,061,435	-		BBR_RS19115	0.25	+0.9
2,061,438	-		BBR_RS19115	0.27	+1.6
2,061,456	+		BBR_RS19115	0.36	-1.5
2,061,477	-		BBR_RS19115	0.46	-0.2
2,061,491	+		BBR_RS19115	0.53	+0.4
2,061,499	-		BBR_RS19115	0.57	+2.4
2,061,562	-		BBR_RS19115	0.89	-0.2
2,061,569	-				-0.6
2,061,569	-				-0.4
2,061,575	+				-0.9
2,061,584	+				+0.4
2,061,584	+				-0.6
2,061,592	-				+0.6
2,061,593	-				-0.7
2,061,595	-				+0.1
2,061,595	-				+0.3
2,061,595	-				+0.1
2,061,618	-				+0.7
2,061,669	-				-3.1
2,061,676	-				-3.4
2,061,676	-				-2.2
2,061,722	-				-2.6
2,061,735	+				-1.4
2,061,799	+				-1.1
2,061,799	+				-2.2
2,061,807	-				-2.9
2,061,811	+				-3.6
2,061,811	+				-3.0
2,061,811	+				-2.2
2,061,825	+				-2.5
2,061,833	-				-1.4
2,061,859	+				-4.1
2,061,859	+				-1.5
2,061,867	+				-1.5
2,061,867	-				-4.8
2,061,867	-				-2.5
2,061,867	-				-2.8
2,061,867	-				-3.0
2,061,867	-				-2.9
2,061,867	-				-1.4
2,061,882	+				-4.2
2,061,894	+				-2.0
2,061,937	+				-0.2
2,061,963	+		BBR_RS19120	0.10	-2.5
2,061,963	+		BBR_RS19120	0.10	-0.4
2,061,966	-		BBR_RS19120	0.10	-3.9
2,061,966	-		BBR_RS19120	0.10	-1.2
2,061,968	+		BBR_RS19120	0.11	-3.2
2,061,971	-		BBR_RS19120	0.11	-3.5
2,061,981	-		BBR_RS19120	0.11	-1.3
2,062,028	-		BBR_RS19120	0.12	-2.3
2,062,028	-		BBR_RS19120	0.12	-1.1
2,062,099	-		BBR_RS19120	0.14	-4.5
2,062,128	-		BBR_RS19120	0.15	-1.9
2,062,282	-		BBR_RS19120	0.19	-2.4
2,062,309	-		BBR_RS19120	0.20	-3.5
2,062,313	-		BBR_RS19120	0.20	-2.3
2,062,374	+		BBR_RS19120	0.22	-4.2
2,062,374	+		BBR_RS19120	0.22	-0.2
2,062,382	-		BBR_RS19120	0.22	-2.2
2,062,397	-		BBR_RS19120	0.22	-0.9
2,062,398	-		BBR_RS19120	0.22	-1.1
2,062,422	+		BBR_RS19120	0.23	-2.7
2,062,430	-		BBR_RS19120	0.23	-4.5
2,062,446	+		BBR_RS19120	0.24	-2.3
2,062,454	+		BBR_RS19120	0.24	-0.2
2,062,454	-		BBR_RS19120	0.24	-3.6
2,062,482	+		BBR_RS19120	0.25	-3.0
2,062,499	+		BBR_RS19120	0.25	-0.4
2,062,512	-		BBR_RS19120	0.26	-3.2
2,062,517	-		BBR_RS19120	0.26	-1.4
2,062,566	-		BBR_RS19120	0.27	-2.0
2,062,644	-		BBR_RS19120	0.29	-0.4
2,062,644	-		BBR_RS19120	0.29	-4.0
2,062,718	+		BBR_RS19120	0.31	-0.8
2,062,749	-		BBR_RS19120	0.32	-2.5
2,062,762	-		BBR_RS19120	0.32	-3.3
2,062,762	-		BBR_RS19120	0.32	-4.5
2,062,799	-		BBR_RS19120	0.33	-1.4
2,062,842	-		BBR_RS19120	0.35	-1.1
2,062,842	-		BBR_RS19120	0.35	-1.5
2,062,847	-		BBR_RS19120	0.35	-0.8
2,062,865	+		BBR_RS19120	0.35	-3.2
2,062,875	+		BBR_RS19120	0.36	-3.8
2,062,897	+		BBR_RS19120	0.36	-1.2
2,062,905	-		BBR_RS19120	0.36	-1.5
2,062,905	-		BBR_RS19120	0.36	+1.4
2,063,022	-		BBR_RS19120	0.40	-1.7
2,063,024	-		BBR_RS19120	0.40	-2.1
2,063,081	-		BBR_RS19120	0.41	-1.1
2,063,098	+		BBR_RS19120	0.42	-5.1
2,063,120	+		BBR_RS19120	0.42	-3.5
2,063,123	-		BBR_RS19120	0.42	-2.9
2,063,130	-		BBR_RS19120	0.43	-3.4
2,063,130	-		BBR_RS19120	0.43	-1.4
2,063,138	-		BBR_RS19120	0.43	+2.4
2,063,212	-		BBR_RS19120	0.45	-2.5
2,063,212	-		BBR_RS19120	0.45	-2.1
2,063,222	-		BBR_RS19120	0.45	-3.5
2,063,222	-		BBR_RS19120	0.45	-2.1
2,063,222	-		BBR_RS19120	0.45	+1.4
2,063,305	+		BBR_RS19120	0.47	-0.6
2,063,439	+		BBR_RS19120	0.51	-3.5
2,063,468	-		BBR_RS19120	0.52	-3.3
2,063,498	-		BBR_RS19120	0.53	-2.7
2,063,548	-		BBR_RS19120	0.54	-4.1
2,063,555	-		BBR_RS19120	0.54	-3.2
2,063,555	-		BBR_RS19120	0.54	-4.5
2,063,559	+		BBR_RS19120	0.54	-0.2
2,063,567	-		BBR_RS19120	0.55	-3.9
2,063,644	-		BBR_RS19120	0.57	-1.9
2,063,705	+		BBR_RS19120	0.58	+0.8
2,063,713	-		BBR_RS19120	0.59	-1.8
2,063,736	-		BBR_RS19120	0.59	-1.9
2,063,810	-		BBR_RS19120	0.61	-3.5
2,063,819	+		BBR_RS19120	0.62	-2.3
2,063,822	-		BBR_RS19120	0.62	-2.1
2,063,822	-		BBR_RS19120	0.62	-2.6
2,063,822	-		BBR_RS19120	0.62	-2.7
2,063,939	-		BBR_RS19120	0.65	-3.0
2,064,027	+		BBR_RS19120	0.67	-2.5
2,064,056	-		BBR_RS19120	0.68	-4.1
2,064,080	-		BBR_RS19120	0.69	-2.4
2,064,111	+		BBR_RS19120	0.70	-1.9
2,064,170	-		BBR_RS19120	0.71	-3.7
2,064,175	-		BBR_RS19120	0.71	-3.2
2,064,191	+		BBR_RS19120	0.72	-3.1
2,064,192	-		BBR_RS19120	0.72	-4.1
2,064,314	-		BBR_RS19120	0.75	+0.8
2,064,396	+		BBR_RS19120	0.78	-2.9
2,064,404	-		BBR_RS19120	0.78	-3.1
2,064,404	-		BBR_RS19120	0.78	-4.1
2,064,404	-		BBR_RS19120	0.78	-1.2
2,064,413	-		BBR_RS19120	0.78	-4.0
2,064,447	+		BBR_RS19120	0.79	-2.9
2,064,455	-		BBR_RS19120	0.79	-0.3
2,064,455	-		BBR_RS19120	0.79	+0.3
2,064,455	-		BBR_RS19120	0.79	+0.4
2,064,460	-		BBR_RS19120	0.79	-1.2
2,064,539	-		BBR_RS19120	0.82	-1.7
2,064,563	-		BBR_RS19120	0.82	-1.6
2,064,608	-		BBR_RS19120	0.83	-0.2
2,064,635	-		BBR_RS19120	0.84	+0.3
2,064,637	-		BBR_RS19120	0.84	-2.7
2,064,679	-		BBR_RS19120	0.85	-2.0
2,064,695	-		BBR_RS19120	0.86	-1.5
2,064,696	-		BBR_RS19120	0.86	-4.5
2,064,717	-		BBR_RS19120	0.86	-1.7
2,064,742	+		BBR_RS19120	0.87	-1.8
2,064,742	+		BBR_RS19120	0.87	-5.5
2,064,750	-		BBR_RS19120	0.87	-2.7
2,064,750	-		BBR_RS19120	0.87	+0.2
2,064,790	+		BBR_RS19120	0.88	-1.6
2,064,795	-		BBR_RS19120	0.89	-1.0
2,064,803	+		BBR_RS19120	0.89	-1.6
2,064,852	+				-2.1
2,064,860	-				-3.0
2,064,860	-				-1.2
2,064,873	+				-3.1
2,064,881	-				-2.2
2,064,903	-				-3.4
2,064,905	-				-3.4
2,064,957	-				-4.6
2,064,960	+				-2.1
2,064,962	-				-3.2
2,064,992	-				-0.9
2,065,000	-				-1.1
2,065,002	+				+0.4
2,065,061	-				-2.7
2,065,071	-				-0.2
2,065,085	-				-2.9
2,065,205	-				-1.1
2,065,208	+				-4.4
2,065,219	+				-0.2
2,065,221	+				-0.7
2,065,221	+				-4.1
2,065,227	-				+0.5
2,065,239	+				-1.5
2,065,255	-				-0.2
2,065,261	+				-2.6
2,065,261	+				-3.1
2,065,269	-				-2.2
2,065,269	-				-1.0
2,065,269	-				-0.7
2,065,269	-				-2.3
2,065,269	-				-0.2
2,065,271	-				-4.1
2,065,282	+				-2.1
2,065,316	-				-3.4
2,065,318	-				-1.2
2,065,326	+				+0.2
2,065,326	+				-2.6
2,065,326	+				-2.4
2,065,326	+				-1.6
2,065,364	-		BBR_RS19125	0.11	-1.2
2,065,364	-		BBR_RS19125	0.11	-3.7
2,065,364	-		BBR_RS19125	0.11	-0.1
2,065,371	-		BBR_RS19125	0.12	-0.4
2,065,381	-		BBR_RS19125	0.13	-2.0
2,065,381	-		BBR_RS19125	0.13	-2.9
2,065,390	+		BBR_RS19125	0.13	-3.3
2,065,464	-		BBR_RS19125	0.19	-2.7
2,065,464	-		BBR_RS19125	0.19	-1.9
2,065,478	+		BBR_RS19125	0.20	-0.9
2,065,488	-		BBR_RS19125	0.21	-1.2
2,065,488	-		BBR_RS19125	0.21	-3.6
2,065,488	-		BBR_RS19125	0.21	-0.7
2,065,494	-		BBR_RS19125	0.21	-2.3
2,065,516	-		BBR_RS19125	0.23	-4.2
2,065,516	-		BBR_RS19125	0.23	-2.6
2,065,521	-		BBR_RS19125	0.23	-1.4
2,065,526	-		BBR_RS19125	0.24	-1.1
2,065,546	-		BBR_RS19125	0.25	-3.5
2,065,563	-		BBR_RS19125	0.26	-1.3
2,065,581	-		BBR_RS19125	0.28	-1.3
2,065,581	-		BBR_RS19125	0.28	-2.6
2,065,595	-		BBR_RS19125	0.29	+0.2
2,065,630	-		BBR_RS19125	0.32	-3.3
2,065,637	+		BBR_RS19125	0.32	-1.1
2,065,640	-		BBR_RS19125	0.32	-2.4
2,065,640	-		BBR_RS19125	0.32	-1.4
2,065,645	-		BBR_RS19125	0.33	+1.1
2,065,653	-		BBR_RS19125	0.33	-2.0
2,065,658	-		BBR_RS19125	0.34	-0.3
2,065,675	-		BBR_RS19125	0.35	-3.9
2,065,675	-		BBR_RS19125	0.35	-1.0
2,065,681	-		BBR_RS19125	0.35	-1.8
2,065,735	+		BBR_RS19125	0.40	+2.4
2,065,741	-		BBR_RS19125	0.40	-0.6
2,065,745	-		BBR_RS19125	0.40	-2.1
2,065,745	-		BBR_RS19125	0.40	-2.1
2,065,753	-		BBR_RS19125	0.41	-0.9
2,065,753	-		BBR_RS19125	0.41	-1.6
2,065,774	-		BBR_RS19125	0.43	-4.3
2,065,778	-		BBR_RS19125	0.43	-2.6
2,065,779	+		BBR_RS19125	0.43	-2.4
2,065,797	-		BBR_RS19125	0.44	-3.8
2,065,800	+		BBR_RS19125	0.45	-0.2
2,065,808	-		BBR_RS19125	0.45	-2.9
2,065,808	-		BBR_RS19125	0.45	-2.1
2,065,876	-		BBR_RS19125	0.50	-3.7
2,065,876	-		BBR_RS19125	0.50	-3.6
2,065,881	-		BBR_RS19125	0.51	-4.7
2,065,889	-		BBR_RS19125	0.51	-2.4
2,065,955	-		BBR_RS19125	0.56	-1.2
2,065,957	-		BBR_RS19125	0.57	-1.8
2,065,967	-		BBR_RS19125	0.57	+0.1
2,065,978	-		BBR_RS19125	0.58	-1.6
2,066,023	-		BBR_RS19125	0.62	-1.9
2,066,097	-		BBR_RS19125	0.67	-1.7
2,066,169	-		BBR_RS19125	0.73	-3.8
2,066,199	-		BBR_RS19125	0.75	-1.1
2,066,199	-		BBR_RS19125	0.75	-1.9