Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19050

Experiment: CDM1 without Cyanocobalamin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Cyanocobalamin
2,050,542	+		BBR_RS19045	0.22	-0.4
2,050,545	-		BBR_RS19045	0.22	+0.0
2,050,545	-		BBR_RS19045	0.22	+0.3
2,050,575	-		BBR_RS19045	0.24	-1.9
2,050,579	+		BBR_RS19045	0.25	+1.3
2,050,587	-		BBR_RS19045	0.25	-0.3
2,050,594	+		BBR_RS19045	0.26	+0.9
2,050,594	+		BBR_RS19045	0.26	+0.4
2,050,594	+		BBR_RS19045	0.26	-2.3
2,050,597	-		BBR_RS19045	0.26	-0.6
2,050,613	+		BBR_RS19045	0.27	+0.3
2,050,621	-		BBR_RS19045	0.28	-0.2
2,050,621	-		BBR_RS19045	0.28	-0.3
2,050,621	-		BBR_RS19045	0.28	+0.7
2,050,621	-		BBR_RS19045	0.28	-1.1
2,050,622	+		BBR_RS19045	0.28	-0.2
2,050,633	+		BBR_RS19045	0.29	+1.5
2,050,641	-		BBR_RS19045	0.30	+1.0
2,050,641	-		BBR_RS19045	0.30	-0.0
2,050,655	+		BBR_RS19045	0.31	-0.5
2,050,663	+		BBR_RS19045	0.31	+0.0
2,050,663	+		BBR_RS19045	0.31	-0.1
2,050,663	-		BBR_RS19045	0.31	-1.9
2,050,663	-		BBR_RS19045	0.31	+1.2
2,050,729	+		BBR_RS19045	0.37	-0.1
2,050,819	+		BBR_RS19045	0.44	-2.2
2,050,819	+		BBR_RS19045	0.44	-1.8
2,050,819	+		BBR_RS19045	0.44	-0.4
2,050,824	+		BBR_RS19045	0.44	-1.0
2,050,824	+		BBR_RS19045	0.44	-0.2
2,050,827	+		BBR_RS19045	0.44	-2.0
2,050,827	-		BBR_RS19045	0.44	-0.1
2,050,828	+		BBR_RS19045	0.44	+0.0
2,050,833	+		BBR_RS19045	0.45	+0.0
2,050,841	-		BBR_RS19045	0.45	+0.1
2,050,895	+		BBR_RS19045	0.50	-0.2
2,050,895	+		BBR_RS19045	0.50	-1.2
2,050,895	+		BBR_RS19045	0.50	+0.2
2,050,897	+		BBR_RS19045	0.50	-0.6
2,050,902	+		BBR_RS19045	0.50	-0.5
2,050,903	-		BBR_RS19045	0.50	-0.7
2,050,903	-		BBR_RS19045	0.50	-0.1
2,050,903	-		BBR_RS19045	0.50	+0.3
2,050,934	+		BBR_RS19045	0.53	+0.6
2,050,939	+		BBR_RS19045	0.53	+1.9
2,050,942	-		BBR_RS19045	0.53	+0.9
2,050,942	-		BBR_RS19045	0.53	+0.1
2,050,942	-		BBR_RS19045	0.53	-0.1
2,050,943	-		BBR_RS19045	0.53	-3.2
2,050,947	+		BBR_RS19045	0.54	-1.0
2,050,949	+		BBR_RS19045	0.54	-0.3
2,050,955	-		BBR_RS19045	0.54	+0.7
2,050,955	-		BBR_RS19045	0.54	-0.2
2,050,955	-		BBR_RS19045	0.54	+1.6
2,050,955	-		BBR_RS19045	0.54	-0.6
2,050,957	+		BBR_RS19045	0.54	+0.8
2,050,978	+		BBR_RS19045	0.56	-1.1
2,050,984	+		BBR_RS19045	0.57	-1.7
2,051,013	-		BBR_RS19045	0.59	-0.1
2,051,013	-		BBR_RS19045	0.59	-0.9
2,051,017	-		BBR_RS19045	0.59	+0.3
2,051,053	+		BBR_RS19045	0.62	-0.4
2,051,053	+		BBR_RS19045	0.62	+0.4
2,051,061	-		BBR_RS19045	0.63	+0.1
2,051,071	-		BBR_RS19045	0.63	+0.0
2,051,071	-		BBR_RS19045	0.63	+0.2
2,051,081	-		BBR_RS19045	0.64	+1.3
2,051,087	+		BBR_RS19045	0.65	+0.4
2,051,088	-		BBR_RS19045	0.65	-0.0
2,051,130	-		BBR_RS19045	0.68	+0.0
2,051,132	+		BBR_RS19045	0.68	+0.3
2,051,133	+		BBR_RS19045	0.68	+0.3
2,051,139	+		BBR_RS19045	0.69	-1.9
2,051,140	-		BBR_RS19045	0.69	-0.2
2,051,142	-		BBR_RS19045	0.69	-0.9
2,051,154	+		BBR_RS19045	0.70	-0.3
2,051,205	+		BBR_RS19045	0.74	-0.2
2,051,210	+		BBR_RS19045	0.74	-0.3
2,051,218	-		BBR_RS19045	0.75	+0.4
2,051,218	-		BBR_RS19045	0.75	-0.0
2,051,218	-		BBR_RS19045	0.75	-0.4
2,051,232	-		BBR_RS19045	0.76	+0.7
2,051,296	+		BBR_RS19045	0.81	+0.2
2,051,333	-		BBR_RS19045	0.84	+1.0
2,051,337	-		BBR_RS19045	0.84	-0.1
2,051,352	+		BBR_RS19045	0.85	+0.1
2,051,352	-		BBR_RS19045	0.85	+0.8
2,051,352	-		BBR_RS19045	0.85	+0.2
2,051,357	+		BBR_RS19045	0.86	-1.0
2,051,362	+		BBR_RS19045	0.86	-1.5
2,051,362	+		BBR_RS19045	0.86	-1.0
2,051,380	-		BBR_RS19045	0.88	+0.0
2,051,386	+		BBR_RS19045	0.88	-0.6
2,051,386	+		BBR_RS19045	0.88	+0.7
2,051,386	-		BBR_RS19045	0.88	-0.6
2,051,399	+		BBR_RS19045	0.89	+0.3
2,051,404	+		BBR_RS19045	0.89	-0.9
2,051,407	-		BBR_RS19045	0.90	+0.9
2,051,424	+				+0.4
2,051,424	+				-0.3
2,051,425	-				-0.5
2,051,447	+				-0.6
2,051,447	+				-1.6
2,051,449	+				+0.1
2,051,449	-				+0.7
2,051,471	-				+0.2
2,051,481	+				-0.1
2,051,515	+				+0.5
2,051,520	+				+0.8
2,051,520	+				-1.1
2,051,530	+				+0.1
2,051,541	+				-1.5
2,051,543	-				-0.6
2,051,551	+				-1.5
2,051,563	+				-2.0
2,051,571	-				-3.5
2,051,593	+				-1.4
2,051,605	+				-0.9
2,051,617	+				-1.5
2,051,625	-				-2.8
2,051,634	+				-1.9
2,051,634	+				-2.4
2,051,647	-				+1.0
2,051,654	+				-1.2
2,051,660	+		BBR_RS19050	0.10	-1.2
2,051,677	-		BBR_RS19050	0.12	-2.0
2,051,695	+		BBR_RS19050	0.13	-2.1
2,051,697	-		BBR_RS19050	0.13	-1.6
2,051,703	-		BBR_RS19050	0.14	-1.1
2,051,704	+		BBR_RS19050	0.14	-1.9
2,051,704	+		BBR_RS19050	0.14	-0.3
2,051,704	+		BBR_RS19050	0.14	-1.9
2,051,704	+		BBR_RS19050	0.14	-1.1
2,051,712	-		BBR_RS19050	0.15	-1.1
2,051,714	-		BBR_RS19050	0.15	-0.6
2,051,714	-		BBR_RS19050	0.15	-1.2
2,051,716	+		BBR_RS19050	0.15	-0.4
2,051,720	-		BBR_RS19050	0.15	-1.8
2,051,740	+		BBR_RS19050	0.17	-2.4
2,051,743	+		BBR_RS19050	0.17	-2.6
2,051,766	-		BBR_RS19050	0.19	-1.4
2,051,785	+		BBR_RS19050	0.21	-0.5
2,051,791	+		BBR_RS19050	0.21	-2.1
2,051,793	-		BBR_RS19050	0.21	-2.3
2,051,799	-		BBR_RS19050	0.22	-1.9
2,051,803	+		BBR_RS19050	0.22	-1.8
2,051,803	+		BBR_RS19050	0.22	-0.8
2,051,812	-		BBR_RS19050	0.23	-1.4
2,051,823	+		BBR_RS19050	0.24	-2.4
2,051,831	-		BBR_RS19050	0.25	-0.5
2,051,836	-		BBR_RS19050	0.25	-0.5
2,051,852	-		BBR_RS19050	0.26	-1.4
2,051,873	-		BBR_RS19050	0.28	-2.1
2,051,878	-		BBR_RS19050	0.29	-1.5
2,051,887	-		BBR_RS19050	0.29	-1.3
2,051,938	+		BBR_RS19050	0.34	-0.5
2,051,950	+		BBR_RS19050	0.35	-1.9
2,051,950	+		BBR_RS19050	0.35	-0.3
2,051,958	-		BBR_RS19050	0.35	-2.0
2,051,958	-		BBR_RS19050	0.35	-2.7
2,051,958	-		BBR_RS19050	0.35	-1.0
2,051,960	-		BBR_RS19050	0.36	-1.6
2,051,960	-		BBR_RS19050	0.36	-1.0
2,052,004	+		BBR_RS19050	0.39	+0.2
2,052,004	+		BBR_RS19050	0.39	-0.3
2,052,015	-		BBR_RS19050	0.40	-2.0
2,052,019	-		BBR_RS19050	0.40	-1.9
2,052,023	+		BBR_RS19050	0.41	-1.2
2,052,032	+		BBR_RS19050	0.42	-1.7
2,052,044	+		BBR_RS19050	0.43	-2.3
2,052,044	+		BBR_RS19050	0.43	-2.6
2,052,079	-		BBR_RS19050	0.46	-0.2
2,052,089	+		BBR_RS19050	0.46	-1.7
2,052,096	-		BBR_RS19050	0.47	-1.2
2,052,098	-		BBR_RS19050	0.47	-3.1
2,052,105	-		BBR_RS19050	0.48	-1.2
2,052,128	-		BBR_RS19050	0.50	-2.2
2,052,140	+		BBR_RS19050	0.51	-2.9
2,052,147	+		BBR_RS19050	0.51	-1.1
2,052,147	+		BBR_RS19050	0.51	-2.0
2,052,152	+		BBR_RS19050	0.52	-2.1
2,052,152	+		BBR_RS19050	0.52	-1.9
2,052,155	-		BBR_RS19050	0.52	-2.2
2,052,155	-		BBR_RS19050	0.52	-2.6
2,052,155	-		BBR_RS19050	0.52	-0.8
2,052,173	-		BBR_RS19050	0.53	-2.9
2,052,183	+		BBR_RS19050	0.54	-1.9
2,052,249	-		BBR_RS19050	0.60	-1.2
2,052,250	+		BBR_RS19050	0.60	-1.9
2,052,258	-		BBR_RS19050	0.61	-1.8
2,052,296	-		BBR_RS19050	0.64	-1.5
2,052,296	-		BBR_RS19050	0.64	-0.4
2,052,301	+		BBR_RS19050	0.64	-0.8
2,052,309	-		BBR_RS19050	0.65	-0.8
2,052,314	-		BBR_RS19050	0.65	-2.6
2,052,364	+		BBR_RS19050	0.70	-0.0
2,052,364	+		BBR_RS19050	0.70	-0.8
2,052,394	-		BBR_RS19050	0.72	-0.8
2,052,394	-		BBR_RS19050	0.72	-1.4
2,052,394	-		BBR_RS19050	0.72	-0.9
2,052,425	+		BBR_RS19050	0.75	-1.7
2,052,463	+		BBR_RS19050	0.78	-1.7
2,052,464	-		BBR_RS19050	0.78	-2.3
2,052,469	-		BBR_RS19050	0.78	-3.0
2,052,470	+		BBR_RS19050	0.78	-1.2
2,052,478	-		BBR_RS19050	0.79	-2.0
2,052,492	-		BBR_RS19050	0.80	-1.6
2,052,505	+		BBR_RS19050	0.81	-0.7
2,052,531	-		BBR_RS19050	0.84	-1.4
2,052,540	-		BBR_RS19050	0.84	-1.8
2,052,576	+		BBR_RS19050	0.87	-1.4
2,052,576	+		BBR_RS19050	0.87	-2.4
2,052,584	-		BBR_RS19050	0.88	-2.9
2,052,645	+				-1.0
2,052,650	+				-1.7
2,052,660	+				-1.7
2,052,663	-				+0.5
2,052,663	-				-3.0
2,052,663	-				-2.2
2,052,663	-				-0.8
2,052,669	+				-0.6
2,052,677	-				-2.4
2,052,686	-				-2.3
2,052,686	-				-1.4
2,052,731	-				+0.7
2,052,809	-				-1.0
2,052,850	+		BBR_RS19055	0.10	-4.2
2,052,904	-		BBR_RS19055	0.27	-1.2
2,052,904	-		BBR_RS19055	0.27	-2.3
2,053,145	+				-2.2
2,053,180	+				-3.4
2,053,188	-				+0.7
2,053,188	-				+0.6
2,053,194	+				-0.7
2,053,194	+				+0.2
2,053,194	+				+0.2
2,053,199	+				+1.4
2,053,201	+				+0.1
2,053,202	-				+0.6
2,053,202	-				+1.7
2,053,206	+				+0.7
2,053,209	-				+1.3
2,053,214	-				-0.6
2,053,214	-				+1.5
2,053,214	-				+0.9
2,053,223	-				-0.5
2,053,223	-				+0.8
2,053,228	-				-0.6
2,053,248	+				+0.6
2,053,255	+				+0.3
2,053,255	+				+1.1
2,053,255	+				+0.0
2,053,283	-				+1.1
2,053,296	-				+1.4
2,053,323	-				+0.7
2,053,338	+				-0.3
2,053,346	-				-0.2
2,053,361	-		BBR_RS19060	0.10	+0.7
2,053,364	+		BBR_RS19060	0.11	+0.0
2,053,364	+		BBR_RS19060	0.11	+1.3
2,053,371	-		BBR_RS19060	0.11	+0.3
2,053,374	+		BBR_RS19060	0.11	+0.2
2,053,394	+		BBR_RS19060	0.13	-0.6
2,053,415	-		BBR_RS19060	0.14	+1.1
2,053,423	+		BBR_RS19060	0.14	-0.6
2,053,423	-		BBR_RS19060	0.14	+1.0
2,053,423	-		BBR_RS19060	0.14	+1.4
2,053,428	+		BBR_RS19060	0.15	+0.2
2,053,493	+		BBR_RS19060	0.19	+0.5
2,053,493	+		BBR_RS19060	0.19	+0.3
2,053,501	+		BBR_RS19060	0.20	+1.5
2,053,501	-		BBR_RS19060	0.20	+0.6
2,053,501	-		BBR_RS19060	0.20	-0.0
2,053,501	-		BBR_RS19060	0.20	+1.1
2,053,506	-		BBR_RS19060	0.20	+1.0
2,053,509	-		BBR_RS19060	0.20	+0.4
2,053,538	+		BBR_RS19060	0.22	+0.9
2,053,541	-		BBR_RS19060	0.22	+0.8
2,053,545	+		BBR_RS19060	0.22	-1.1
2,053,546	-		BBR_RS19060	0.22	+0.6
2,053,550	+		BBR_RS19060	0.23	-0.1
2,053,551	+		BBR_RS19060	0.23	-0.8
2,053,552	-		BBR_RS19060	0.23	+0.1
2,053,556	+		BBR_RS19060	0.23	+0.5
2,053,559	-		BBR_RS19060	0.23	-1.5
2,053,559	-		BBR_RS19060	0.23	+1.4
2,053,559	-		BBR_RS19060	0.23	+0.6
2,053,564	-		BBR_RS19060	0.24	+1.4
2,053,575	+		BBR_RS19060	0.24	+0.8
2,053,583	-		BBR_RS19060	0.25	-0.4
2,053,588	-		BBR_RS19060	0.25	+1.1
2,053,590	+		BBR_RS19060	0.25	-2.1
2,053,606	+		BBR_RS19060	0.26	-0.4
2,053,614	-		BBR_RS19060	0.27	+0.7
2,053,614	-		BBR_RS19060	0.27	+1.1
2,053,614	-		BBR_RS19060	0.27	+0.5
2,053,619	-		BBR_RS19060	0.27	-2.5
2,053,624	-		BBR_RS19060	0.28	+0.6
2,053,631	-		BBR_RS19060	0.28	+0.2
2,053,633	-		BBR_RS19060	0.28	-0.4
2,053,634	-		BBR_RS19060	0.28	+0.5
2,053,641	+		BBR_RS19060	0.29	-2.3
2,053,649	-		BBR_RS19060	0.29	+0.9
2,053,649	-		BBR_RS19060	0.29	+0.7
2,053,674	-		BBR_RS19060	0.31	+0.6
2,053,690	-		BBR_RS19060	0.32	+0.4
2,053,695	+		BBR_RS19060	0.32	-0.6
2,053,704	-		BBR_RS19060	0.33	-0.0
2,053,707	-		BBR_RS19060	0.33	+1.6
2,053,709	-		BBR_RS19060	0.33	+0.8
2,053,711	+		BBR_RS19060	0.33	-1.6
2,053,714	-		BBR_RS19060	0.33	+0.3