Experiment: CDM1 without Cyanocobalamin
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13450 and BBR_RS13455 are separated by 81 nucleotides BBR_RS13455 and BBR_RS13460 are separated by 499 nucleotides
BBR_RS13450: BBR_RS13450 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 790,705 to 791,457
_RS13450
BBR_RS13455: BBR_RS13455 - formate-dependent phosphoribosylglycinamide formyltransferase, at 791,539 to 792,840
_RS13455
BBR_RS13460: BBR_RS13460 - aminotransferase, at 793,340 to 794,590
_RS13460
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 790.616 kb on + strand at 790.662 kb on - strand at 790.673 kb on + strand at 790.688 kb on + strand at 790.724 kb on + strand at 790.730 kb on + strand at 790.786 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.041 kb on + strand, within BBR_RS13450 at 791.098 kb on + strand, within BBR_RS13450 at 791.341 kb on + strand, within BBR_RS13450 at 791.408 kb on + strand at 791.472 kb on - strand at 791.490 kb on + strand at 791.520 kb on - strand at 791.523 kb on + strand at 791.526 kb on - strand at 791.598 kb on - strand at 791.630 kb on + strand at 791.754 kb on - strand, within BBR_RS13455 at 791.791 kb on + strand, within BBR_RS13455 at 791.854 kb on + strand, within BBR_RS13455 at 791.916 kb on - strand, within BBR_RS13455 at 791.940 kb on + strand, within BBR_RS13455 at 792.175 kb on + strand, within BBR_RS13455 at 792.241 kb on - strand, within BBR_RS13455 at 792.304 kb on + strand, within BBR_RS13455 at 792.495 kb on + strand, within BBR_RS13455 at 792.534 kb on - strand, within BBR_RS13455 at 792.549 kb on + strand, within BBR_RS13455 at 792.562 kb on - strand, within BBR_RS13455 at 792.750 kb on - strand at 792.759 kb on + strand at 792.828 kb on - strand at 792.837 kb on - strand at 792.853 kb on - strand at 792.865 kb on + strand at 792.865 kb on + strand at 792.865 kb on + strand at 792.865 kb on + strand at 792.865 kb on + strand at 792.865 kb on + strand at 792.873 kb on - strand at 792.873 kb on - strand at 792.887 kb on + strand at 792.929 kb on - strand at 792.929 kb on - strand at 792.931 kb on - strand at 792.999 kb on + strand at 792.999 kb on + strand at 792.999 kb on + strand at 792.999 kb on + strand at 792.999 kb on + strand at 792.999 kb on + strand at 793.006 kb on - strand at 793.007 kb on - strand at 793.007 kb on - strand at 793.007 kb on - strand at 793.022 kb on - strand at 793.048 kb on + strand at 793.050 kb on + strand at 793.050 kb on + strand at 793.096 kb on + strand at 793.106 kb on + strand at 793.114 kb on - strand at 793.114 kb on - strand at 793.116 kb on + strand at 793.121 kb on + strand at 793.124 kb on - strand at 793.129 kb on + strand at 793.129 kb on + strand at 793.131 kb on + strand at 793.158 kb on + strand at 793.262 kb on + strand at 793.262 kb on + strand at 793.270 kb on - strand at 793.274 kb on + strand at 793.312 kb on + strand at 793.325 kb on - strand at 793.325 kb on - strand at 793.325 kb on - strand at 793.325 kb on - strand at 793.352 kb on + strand at 793.369 kb on + strand at 793.418 kb on - strand at 793.488 kb on + strand, within BBR_RS13460 at 793.597 kb on - strand, within BBR_RS13460 at 793.598 kb on + strand, within BBR_RS13460 at 793.599 kb on - strand, within BBR_RS13460 at 793.614 kb on + strand, within BBR_RS13460 at 793.616 kb on - strand, within BBR_RS13460 at 793.761 kb on - strand, within BBR_RS13460 at 793.821 kb on + strand, within BBR_RS13460 at 793.829 kb on - strand, within BBR_RS13460 at 793.835 kb on + strand, within BBR_RS13460
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Cyanocobalamin remove 790,616 + +1.6 790,662 - +0.5 790,673 + +0.4 790,688 + -1.7 790,724 + +1.3 790,730 + +0.3 790,786 + BBR_RS13450 0.11 +0.5 791,041 + BBR_RS13450 0.45 -2.0 791,041 + BBR_RS13450 0.45 -1.8 791,098 + BBR_RS13450 0.52 -2.7 791,341 + BBR_RS13450 0.84 +0.0 791,408 + -1.0 791,472 - -0.1 791,490 + +0.5 791,520 - -0.1 791,523 + -0.2 791,526 - -1.0 791,598 - -0.3 791,630 + -1.6 791,754 - BBR_RS13455 0.17 -0.9 791,791 + BBR_RS13455 0.19 +0.5 791,854 + BBR_RS13455 0.24 -1.4 791,916 - BBR_RS13455 0.29 -0.2 791,940 + BBR_RS13455 0.31 -0.6 792,175 + BBR_RS13455 0.49 -2.0 792,241 - BBR_RS13455 0.54 -0.2 792,304 + BBR_RS13455 0.59 -2.9 792,495 + BBR_RS13455 0.73 -0.9 792,534 - BBR_RS13455 0.76 +1.0 792,549 + BBR_RS13455 0.78 -1.5 792,562 - BBR_RS13455 0.79 +1.3 792,750 - +1.0 792,759 + +0.2 792,828 - -0.4 792,837 - +0.5 792,853 - +0.3 792,865 + -0.3 792,865 + -0.9 792,865 + -1.6 792,865 + -0.1 792,865 + +0.4 792,865 + -0.1 792,873 - -0.1 792,873 - -0.3 792,887 + +1.4 792,929 - +0.4 792,929 - -0.5 792,931 - +0.1 792,999 + +0.4 792,999 + -0.0 792,999 + +0.3 792,999 + -1.8 792,999 + -0.6 792,999 + -2.9 793,006 - -1.3 793,007 - -0.6 793,007 - -0.4 793,007 - -0.6 793,022 - +0.8 793,048 + -0.9 793,050 + -0.4 793,050 + +0.3 793,096 + -1.3 793,106 + +0.0 793,114 - -0.1 793,114 - +0.3 793,116 + -1.2 793,121 + -2.8 793,124 - -1.8 793,129 + -0.9 793,129 + +0.7 793,131 + -0.3 793,158 + -0.6 793,262 + -1.0 793,262 + +0.9 793,270 - +0.2 793,274 + -0.5 793,312 + -0.5 793,325 - -0.4 793,325 - -0.1 793,325 - +0.3 793,325 - -0.8 793,352 + -0.0 793,369 + +0.0 793,418 - +1.1 793,488 + BBR_RS13460 0.12 -0.1 793,597 - BBR_RS13460 0.21 -0.0 793,598 + BBR_RS13460 0.21 -1.3 793,599 - BBR_RS13460 0.21 +0.2 793,614 + BBR_RS13460 0.22 -0.7 793,616 - BBR_RS13460 0.22 -0.6 793,761 - BBR_RS13460 0.34 -0.2 793,821 + BBR_RS13460 0.38 +0.2 793,829 - BBR_RS13460 0.39 -0.3 793,835 + BBR_RS13460 0.40 -0.3
Or see this region's nucleotide sequence