Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12810

Experiment: CDM1 without Cyanocobalamin

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS20525 and BBR_RS12805 are separated by 109 nucleotidesBBR_RS12805 and BBR_RS12810 are separated by 166 nucleotidesBBR_RS12810 and BBR_RS12815 are separated by 306 nucleotides BBR_RS20525: BBR_RS20525 - DUF3800 domain-containing protein, at 621,501 to 622,313 _RS20525 BBR_RS12805: BBR_RS12805 - hypothetical protein, at 622,423 to 622,620 _RS12805 BBR_RS12810: BBR_RS12810 - hypothetical protein, at 622,787 to 624,178 _RS12810 BBR_RS12815: BBR_RS12815 - hypothetical protein, at 624,485 to 624,919 _RS12815 Position (kb) 622 623 624 625Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 621.899 kb on + strand, within BBR_RS20525at 621.912 kb on - strand, within BBR_RS20525at 621.930 kb on + strand, within BBR_RS20525at 621.932 kb on + strand, within BBR_RS20525at 621.938 kb on - strand, within BBR_RS20525at 621.940 kb on - strand, within BBR_RS20525at 621.950 kb on - strand, within BBR_RS20525at 621.954 kb on - strand, within BBR_RS20525at 622.045 kb on + strand, within BBR_RS20525at 622.112 kb on + strand, within BBR_RS20525at 622.174 kb on - strand, within BBR_RS20525at 622.204 kb on - strand, within BBR_RS20525at 622.269 kb on + strandat 622.269 kb on + strandat 622.277 kb on + strandat 622.289 kb on + strandat 622.372 kb on - strandat 622.410 kb on - strandat 622.437 kb on + strandat 622.468 kb on - strand, within BBR_RS12805at 622.470 kb on + strand, within BBR_RS12805at 622.563 kb on + strand, within BBR_RS12805at 622.563 kb on + strand, within BBR_RS12805at 622.607 kb on - strandat 622.632 kb on - strandat 622.749 kb on - strandat 622.759 kb on - strandat 622.771 kb on - strandat 622.786 kb on + strandat 622.793 kb on - strandat 622.802 kb on - strandat 622.827 kb on + strandat 622.839 kb on + strandat 622.882 kb on + strandat 622.884 kb on + strandat 622.890 kb on + strandat 622.892 kb on - strandat 622.914 kb on + strandat 622.914 kb on + strandat 622.936 kb on - strand, within BBR_RS12810at 622.936 kb on - strand, within BBR_RS12810at 622.965 kb on - strand, within BBR_RS12810at 623.015 kb on + strand, within BBR_RS12810at 623.021 kb on + strand, within BBR_RS12810at 623.094 kb on + strand, within BBR_RS12810at 623.103 kb on - strand, within BBR_RS12810at 623.125 kb on - strand, within BBR_RS12810at 623.125 kb on - strand, within BBR_RS12810at 623.132 kb on - strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.136 kb on + strand, within BBR_RS12810at 623.198 kb on + strand, within BBR_RS12810at 623.206 kb on - strand, within BBR_RS12810at 623.206 kb on - strand, within BBR_RS12810at 623.224 kb on + strand, within BBR_RS12810at 623.224 kb on + strand, within BBR_RS12810at 623.242 kb on - strand, within BBR_RS12810at 623.277 kb on - strand, within BBR_RS12810at 623.319 kb on - strand, within BBR_RS12810at 623.326 kb on + strand, within BBR_RS12810at 623.326 kb on + strand, within BBR_RS12810at 623.334 kb on - strand, within BBR_RS12810at 623.350 kb on + strand, within BBR_RS12810at 623.350 kb on + strand, within BBR_RS12810at 623.357 kb on - strand, within BBR_RS12810at 623.393 kb on + strand, within BBR_RS12810at 623.409 kb on + strand, within BBR_RS12810at 623.409 kb on + strand, within BBR_RS12810at 623.414 kb on + strand, within BBR_RS12810at 623.417 kb on - strand, within BBR_RS12810at 623.441 kb on - strand, within BBR_RS12810at 623.497 kb on + strand, within BBR_RS12810at 623.572 kb on - strand, within BBR_RS12810at 623.591 kb on + strand, within BBR_RS12810at 623.597 kb on + strand, within BBR_RS12810at 623.655 kb on + strand, within BBR_RS12810at 623.673 kb on + strand, within BBR_RS12810at 623.678 kb on - strand, within BBR_RS12810at 623.705 kb on - strand, within BBR_RS12810at 623.719 kb on - strand, within BBR_RS12810at 623.731 kb on - strand, within BBR_RS12810at 623.731 kb on - strand, within BBR_RS12810at 623.762 kb on - strand, within BBR_RS12810at 623.781 kb on - strand, within BBR_RS12810at 623.788 kb on - strand, within BBR_RS12810at 623.819 kb on + strand, within BBR_RS12810at 623.843 kb on + strand, within BBR_RS12810at 623.853 kb on + strand, within BBR_RS12810at 623.861 kb on - strand, within BBR_RS12810at 623.917 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.934 kb on + strand, within BBR_RS12810at 623.946 kb on + strand, within BBR_RS12810at 623.981 kb on - strand, within BBR_RS12810at 624.023 kb on - strand, within BBR_RS12810at 624.035 kb on + strand, within BBR_RS12810at 624.052 kb on + strandat 624.144 kb on - strandat 624.177 kb on - strandat 624.179 kb on + strandat 624.187 kb on - strandat 624.191 kb on + strandat 624.191 kb on + strandat 624.191 kb on + strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.199 kb on - strandat 624.227 kb on + strandat 624.233 kb on - strandat 624.233 kb on - strandat 624.243 kb on - strandat 624.257 kb on - strandat 624.283 kb on - strandat 624.285 kb on + strandat 624.293 kb on - strandat 624.361 kb on + strandat 624.369 kb on - strandat 624.369 kb on - strandat 624.373 kb on + strandat 624.455 kb on + strandat 624.455 kb on + strandat 624.455 kb on - strandat 624.492 kb on + strandat 624.493 kb on - strandat 624.519 kb on - strandat 624.519 kb on - strandat 624.520 kb on - strandat 624.528 kb on - strandat 624.557 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.571 kb on + strand, within BBR_RS12815at 624.599 kb on + strand, within BBR_RS12815at 624.632 kb on - strand, within BBR_RS12815at 624.670 kb on + strand, within BBR_RS12815at 624.672 kb on - strand, within BBR_RS12815at 624.693 kb on + strand, within BBR_RS12815at 624.696 kb on - strand, within BBR_RS12815at 624.700 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.701 kb on - strand, within BBR_RS12815at 624.717 kb on + strand, within BBR_RS12815at 624.725 kb on - strand, within BBR_RS12815at 624.735 kb on - strand, within BBR_RS12815at 624.761 kb on + strand, within BBR_RS12815at 624.788 kb on - strand, within BBR_RS12815at 624.852 kb on - strand, within BBR_RS12815at 624.859 kb on - strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.873 kb on + strand, within BBR_RS12815at 624.881 kb on - strandat 624.881 kb on - strandat 624.899 kb on - strandat 624.928 kb on + strandat 624.936 kb on - strandat 624.936 kb on - strandat 625.094 kb on + strandat 625.095 kb on - strandat 625.095 kb on - strandat 625.100 kb on - strandat 625.117 kb on - strandat 625.137 kb on + strandat 625.148 kb on + strandat 625.168 kb on + strandat 625.168 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Cyanocobalamin
remove
621,899 + BBR_RS20525 0.49 -2.8
621,912 - BBR_RS20525 0.51 -2.4
621,930 + BBR_RS20525 0.53 -0.5
621,932 + BBR_RS20525 0.53 +0.3
621,938 - BBR_RS20525 0.54 -1.1
621,940 - BBR_RS20525 0.54 -0.3
621,950 - BBR_RS20525 0.55 -1.1
621,954 - BBR_RS20525 0.56 -1.0
622,045 + BBR_RS20525 0.67 -0.6
622,112 + BBR_RS20525 0.75 +0.2
622,174 - BBR_RS20525 0.83 -1.1
622,204 - BBR_RS20525 0.86 +0.2
622,269 + -0.8
622,269 + +0.4
622,277 + -3.0
622,289 + -1.0
622,372 - -0.1
622,410 - -1.0
622,437 + -1.4
622,468 - BBR_RS12805 0.23 +0.2
622,470 + BBR_RS12805 0.24 -1.6
622,563 + BBR_RS12805 0.71 -0.9
622,563 + BBR_RS12805 0.71 -0.0
622,607 - -0.2
622,632 - -1.0
622,749 - +1.0
622,759 - -1.3
622,771 - -0.2
622,786 + -0.8
622,793 - -2.9
622,802 - +0.4
622,827 + -1.4
622,839 + +0.4
622,882 + -0.2
622,884 + -2.1
622,890 + -0.4
622,892 - -0.8
622,914 + -1.7
622,914 + -0.4
622,936 - BBR_RS12810 0.11 -1.5
622,936 - BBR_RS12810 0.11 -2.3
622,965 - BBR_RS12810 0.13 -1.1
623,015 + BBR_RS12810 0.16 -1.6
623,021 + BBR_RS12810 0.17 -2.1
623,094 + BBR_RS12810 0.22 -0.6
623,103 - BBR_RS12810 0.23 -3.1
623,125 - BBR_RS12810 0.24 -0.9
623,125 - BBR_RS12810 0.24 -0.6
623,132 - BBR_RS12810 0.25 -1.3
623,136 + BBR_RS12810 0.25 -2.2
623,136 + BBR_RS12810 0.25 +0.6
623,136 + BBR_RS12810 0.25 -2.0
623,198 + BBR_RS12810 0.30 -2.6
623,206 - BBR_RS12810 0.30 +0.1
623,206 - BBR_RS12810 0.30 -2.2
623,224 + BBR_RS12810 0.31 -2.4
623,224 + BBR_RS12810 0.31 -2.5
623,242 - BBR_RS12810 0.33 -1.9
623,277 - BBR_RS12810 0.35 -2.7
623,319 - BBR_RS12810 0.38 -1.1
623,326 + BBR_RS12810 0.39 -1.6
623,326 + BBR_RS12810 0.39 +1.4
623,334 - BBR_RS12810 0.39 -1.2
623,350 + BBR_RS12810 0.40 -2.1
623,350 + BBR_RS12810 0.40 -0.6
623,357 - BBR_RS12810 0.41 -0.2
623,393 + BBR_RS12810 0.44 +1.6
623,409 + BBR_RS12810 0.45 -0.6
623,409 + BBR_RS12810 0.45 -0.5
623,414 + BBR_RS12810 0.45 +0.0
623,417 - BBR_RS12810 0.45 +0.3
623,441 - BBR_RS12810 0.47 -1.3
623,497 + BBR_RS12810 0.51 -2.4
623,572 - BBR_RS12810 0.56 -1.6
623,591 + BBR_RS12810 0.58 +0.9
623,597 + BBR_RS12810 0.58 -3.2
623,655 + BBR_RS12810 0.62 +0.6
623,673 + BBR_RS12810 0.64 -3.1
623,678 - BBR_RS12810 0.64 -0.7
623,705 - BBR_RS12810 0.66 -0.5
623,719 - BBR_RS12810 0.67 -2.9
623,731 - BBR_RS12810 0.68 -1.6
623,731 - BBR_RS12810 0.68 -0.9
623,762 - BBR_RS12810 0.70 -2.7
623,781 - BBR_RS12810 0.71 -2.5
623,788 - BBR_RS12810 0.72 -2.0
623,819 + BBR_RS12810 0.74 -0.6
623,843 + BBR_RS12810 0.76 -1.2
623,853 + BBR_RS12810 0.77 -1.9
623,861 - BBR_RS12810 0.77 -2.6
623,917 + BBR_RS12810 0.81 -0.6
623,934 + BBR_RS12810 0.82 -1.0
623,934 + BBR_RS12810 0.82 -1.2
623,934 + BBR_RS12810 0.82 -0.7
623,946 + BBR_RS12810 0.83 -1.4
623,981 - BBR_RS12810 0.86 -1.3
624,023 - BBR_RS12810 0.89 -1.6
624,035 + BBR_RS12810 0.90 +0.4
624,052 + -0.6
624,144 - -0.6
624,177 - -0.7
624,179 + -1.0
624,187 - -2.4
624,191 + -0.6
624,191 + -1.8
624,191 + -0.5
624,199 - +1.6
624,199 - +0.3
624,199 - +0.1
624,199 - +3.6
624,227 + -1.3
624,233 - +0.7
624,233 - -0.7
624,243 - +0.9
624,257 - +0.0
624,283 - +1.2
624,285 + -2.1
624,293 - +0.1
624,361 + +0.9
624,369 - -0.6
624,369 - +0.6
624,373 + -1.7
624,455 + -0.5
624,455 + -2.9
624,455 - -0.1
624,492 + -1.2
624,493 - -0.6
624,519 - -1.8
624,519 - -0.4
624,520 - -0.2
624,528 - -0.1
624,557 + BBR_RS12815 0.17 -1.5
624,571 + BBR_RS12815 0.20 -1.6
624,571 + BBR_RS12815 0.20 -2.1
624,599 + BBR_RS12815 0.26 -3.0
624,632 - BBR_RS12815 0.34 -1.0
624,670 + BBR_RS12815 0.43 -0.3
624,672 - BBR_RS12815 0.43 -0.3
624,693 + BBR_RS12815 0.48 -0.2
624,696 - BBR_RS12815 0.49 -0.2
624,700 - BBR_RS12815 0.49 -0.3
624,701 - BBR_RS12815 0.50 -0.2
624,701 - BBR_RS12815 0.50 -0.3
624,701 - BBR_RS12815 0.50 +0.3
624,717 + BBR_RS12815 0.53 -1.0
624,725 - BBR_RS12815 0.55 -0.4
624,735 - BBR_RS12815 0.57 -2.0
624,761 + BBR_RS12815 0.63 -0.4
624,788 - BBR_RS12815 0.70 +0.2
624,852 - BBR_RS12815 0.84 -0.8
624,859 - BBR_RS12815 0.86 -0.1
624,873 + BBR_RS12815 0.89 +0.2
624,873 + BBR_RS12815 0.89 -0.8
624,873 + BBR_RS12815 0.89 -3.1
624,881 - -2.7
624,881 - -2.0
624,899 - +0.0
624,928 + -4.0
624,936 - +0.0
624,936 - -0.6
625,094 + -0.5
625,095 - +0.6
625,095 - -0.6
625,100 - -0.3
625,117 - -0.5
625,137 + -3.4
625,148 + +0.3
625,168 + +1.4
625,168 + -2.4

Or see this region's nucleotide sequence