Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_868

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_866 and Ac3H11_867 overlap by 4 nucleotidesAc3H11_867 and Ac3H11_868 are separated by 105 nucleotidesAc3H11_868 and Ac3H11_869 are separated by 227 nucleotides Ac3H11_866 - ATP-dependent DNA helicase Rep, at 147,684 to 149,663 _866 Ac3H11_867 - hypothetical protein, at 149,660 to 150,061 _867 Ac3H11_868 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 150,167 to 151,366 _868 Ac3H11_869 - Auxin Efflux Carrier, at 151,594 to 152,547 _869 Position (kb) 150 151 152Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 149.862 kb on + strand, within Ac3H11_867at 150.011 kb on + strand, within Ac3H11_867at 150.575 kb on + strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.701 kb on + strand, within Ac3H11_868at 150.716 kb on + strand, within Ac3H11_868at 150.717 kb on - strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.851 kb on + strand, within Ac3H11_868at 150.851 kb on + strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 151.049 kb on + strand, within Ac3H11_868at 151.050 kb on - strand, within Ac3H11_868at 151.050 kb on - strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.115 kb on + strand, within Ac3H11_868at 151.116 kb on - strand, within Ac3H11_868at 151.116 kb on - strand, within Ac3H11_868at 151.116 kb on - strand, within Ac3H11_868at 151.127 kb on + strand, within Ac3H11_868at 151.127 kb on + strand, within Ac3H11_868at 151.127 kb on + strand, within Ac3H11_868at 151.127 kb on + strand, within Ac3H11_868at 151.127 kb on + strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.128 kb on - strand, within Ac3H11_868at 151.205 kb on + strand, within Ac3H11_868at 151.205 kb on + strand, within Ac3H11_868at 151.205 kb on + strand, within Ac3H11_868at 151.206 kb on - strand, within Ac3H11_868at 151.206 kb on - strand, within Ac3H11_868at 151.206 kb on - strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.208 kb on + strand, within Ac3H11_868at 151.209 kb on - strand, within Ac3H11_868at 151.209 kb on - strand, within Ac3H11_868at 151.209 kb on - strand, within Ac3H11_868at 151.209 kb on - strand, within Ac3H11_868at 151.209 kb on - strand, within Ac3H11_868at 151.226 kb on + strand, within Ac3H11_868at 151.226 kb on + strand, within Ac3H11_868at 151.226 kb on + strand, within Ac3H11_868at 151.226 kb on + strand, within Ac3H11_868at 151.227 kb on - strand, within Ac3H11_868at 151.227 kb on - strand, within Ac3H11_868at 151.319 kb on + strandat 151.418 kb on - strandat 151.418 kb on - strandat 151.426 kb on + strandat 151.426 kb on + strandat 151.427 kb on - strandat 151.427 kb on - strandat 151.427 kb on - strandat 151.452 kb on + strandat 151.452 kb on + strandat 151.452 kb on + strandat 151.452 kb on + strandat 151.452 kb on + strandat 151.453 kb on - strandat 151.453 kb on - strandat 151.453 kb on - strandat 151.453 kb on - strandat 151.453 kb on - strandat 151.456 kb on + strandat 151.456 kb on + strandat 151.456 kb on + strandat 151.499 kb on + strandat 151.586 kb on + strandat 151.586 kb on + strandat 151.586 kb on + strandat 151.586 kb on + strandat 151.586 kb on + strandat 151.586 kb on + strandat 151.587 kb on - strandat 151.714 kb on + strand, within Ac3H11_869at 151.714 kb on + strand, within Ac3H11_869at 151.715 kb on - strand, within Ac3H11_869at 151.715 kb on - strand, within Ac3H11_869at 151.715 kb on - strand, within Ac3H11_869at 151.739 kb on - strand, within Ac3H11_869at 151.739 kb on - strand, within Ac3H11_869at 151.755 kb on + strand, within Ac3H11_869at 151.755 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.798 kb on + strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 151.799 kb on - strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.284 kb on + strand, within Ac3H11_869at 152.285 kb on - strand, within Ac3H11_869at 152.285 kb on - strand, within Ac3H11_869at 152.285 kb on - strand, within Ac3H11_869

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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149,862 + Ac3H11_867 0.50 -1.5
150,011 + Ac3H11_867 0.87 +1.5
150,575 + Ac3H11_868 0.34 -1.0
150,576 - Ac3H11_868 0.34 +0.6
150,576 - Ac3H11_868 0.34 +0.2
150,576 - Ac3H11_868 0.34 -0.2
150,576 - Ac3H11_868 0.34 -2.3
150,576 - Ac3H11_868 0.34 -2.4
150,593 + Ac3H11_868 0.35 -0.2
150,593 + Ac3H11_868 0.35 -1.1
150,593 + Ac3H11_868 0.35 +1.6
150,593 + Ac3H11_868 0.35 +0.2
150,593 + Ac3H11_868 0.35 +1.4
150,593 + Ac3H11_868 0.35 +0.4
150,593 + Ac3H11_868 0.35 +0.6
150,593 + Ac3H11_868 0.35 +1.3
150,593 + Ac3H11_868 0.35 +1.7
150,593 + Ac3H11_868 0.35 +2.4
150,593 + Ac3H11_868 0.35 -2.0
150,593 + Ac3H11_868 0.35 -2.1
150,593 + Ac3H11_868 0.35 +0.7
150,593 + Ac3H11_868 0.35 -0.3
150,593 + Ac3H11_868 0.35 +0.3
150,593 + Ac3H11_868 0.35 -0.5
150,593 + Ac3H11_868 0.35 -4.6
150,594 - Ac3H11_868 0.36 -1.4
150,594 - Ac3H11_868 0.36 +1.3
150,594 - Ac3H11_868 0.36 +2.5
150,594 - Ac3H11_868 0.36 -2.6
150,594 - Ac3H11_868 0.36 -0.3
150,594 - Ac3H11_868 0.36 +0.9
150,594 - Ac3H11_868 0.36 -1.2
150,594 - Ac3H11_868 0.36 -1.5
150,594 - Ac3H11_868 0.36 -2.6
150,594 - Ac3H11_868 0.36 -3.0
150,594 - Ac3H11_868 0.36 -2.4
150,701 + Ac3H11_868 0.45 +0.6
150,716 + Ac3H11_868 0.46 -1.6
150,717 - Ac3H11_868 0.46 -2.4
150,845 + Ac3H11_868 0.56 +1.0
150,845 + Ac3H11_868 0.56 -0.2
150,845 + Ac3H11_868 0.56 -0.3
150,845 + Ac3H11_868 0.56 -2.2
150,845 + Ac3H11_868 0.56 -1.3
150,846 - Ac3H11_868 0.57 -0.7
150,846 - Ac3H11_868 0.57 -1.0
150,846 - Ac3H11_868 0.57 -3.1
150,846 - Ac3H11_868 0.57 -1.1
150,846 - Ac3H11_868 0.57 +1.4
150,846 - Ac3H11_868 0.57 -2.0
150,846 - Ac3H11_868 0.57 -0.0
150,851 + Ac3H11_868 0.57 +0.8
150,851 + Ac3H11_868 0.57 -0.3
150,852 - Ac3H11_868 0.57 -0.8
150,852 - Ac3H11_868 0.57 -1.5
150,852 - Ac3H11_868 0.57 -1.3
150,852 - Ac3H11_868 0.57 -3.2
150,852 - Ac3H11_868 0.57 -0.4
150,852 - Ac3H11_868 0.57 +1.6
150,852 - Ac3H11_868 0.57 -2.1
151,049 + Ac3H11_868 0.73 +2.5
151,050 - Ac3H11_868 0.74 +0.3
151,050 - Ac3H11_868 0.74 +0.7
151,115 + Ac3H11_868 0.79 -1.6
151,115 + Ac3H11_868 0.79 +0.4
151,115 + Ac3H11_868 0.79 +2.7
151,115 + Ac3H11_868 0.79 +1.9
151,115 + Ac3H11_868 0.79 +0.4
151,115 + Ac3H11_868 0.79 +1.2
151,115 + Ac3H11_868 0.79 -1.0
151,115 + Ac3H11_868 0.79 +0.3
151,116 - Ac3H11_868 0.79 +1.5
151,116 - Ac3H11_868 0.79 +1.7
151,116 - Ac3H11_868 0.79 -0.1
151,127 + Ac3H11_868 0.80 +0.0
151,127 + Ac3H11_868 0.80 +0.8
151,127 + Ac3H11_868 0.80 -2.1
151,127 + Ac3H11_868 0.80 -2.0
151,127 + Ac3H11_868 0.80 -1.0
151,128 - Ac3H11_868 0.80 +1.1
151,128 - Ac3H11_868 0.80 +0.9
151,128 - Ac3H11_868 0.80 +0.8
151,128 - Ac3H11_868 0.80 -1.9
151,128 - Ac3H11_868 0.80 -0.2
151,128 - Ac3H11_868 0.80 -0.1
151,205 + Ac3H11_868 0.86 -2.3
151,205 + Ac3H11_868 0.86 -0.1
151,205 + Ac3H11_868 0.86 -1.9
151,206 - Ac3H11_868 0.87 +0.1
151,206 - Ac3H11_868 0.87 -1.6
151,206 - Ac3H11_868 0.87 -2.2
151,208 + Ac3H11_868 0.87 -0.1
151,208 + Ac3H11_868 0.87 +0.6
151,208 + Ac3H11_868 0.87 -0.2
151,208 + Ac3H11_868 0.87 +0.4
151,208 + Ac3H11_868 0.87 -3.0
151,208 + Ac3H11_868 0.87 +0.7
151,209 - Ac3H11_868 0.87 -0.1
151,209 - Ac3H11_868 0.87 +1.0
151,209 - Ac3H11_868 0.87 +0.2
151,209 - Ac3H11_868 0.87 +0.6
151,209 - Ac3H11_868 0.87 -3.3
151,226 + Ac3H11_868 0.88 -1.4
151,226 + Ac3H11_868 0.88 +2.0
151,226 + Ac3H11_868 0.88 -3.4
151,226 + Ac3H11_868 0.88 -3.8
151,227 - Ac3H11_868 0.88 -1.1
151,227 - Ac3H11_868 0.88 -0.4
151,319 + +0.7
151,418 - -0.0
151,418 - +0.1
151,426 + -2.1
151,426 + -0.5
151,427 - -2.5
151,427 - -0.5
151,427 - +1.1
151,452 + +1.5
151,452 + +0.3
151,452 + -3.5
151,452 + +1.5
151,452 + -1.9
151,453 - -0.6
151,453 - -1.7
151,453 - -0.2
151,453 - -0.3
151,453 - +0.9
151,456 + -0.8
151,456 + +0.3
151,456 + +2.2
151,499 + -0.3
151,586 + -2.7
151,586 + +1.6
151,586 + -2.4
151,586 + +1.5
151,586 + +1.2
151,586 + +0.3
151,587 - -0.3
151,714 + Ac3H11_869 0.13 -0.6
151,714 + Ac3H11_869 0.13 +0.7
151,715 - Ac3H11_869 0.13 -0.5
151,715 - Ac3H11_869 0.13 -0.1
151,715 - Ac3H11_869 0.13 +0.1
151,739 - Ac3H11_869 0.15 -0.3
151,739 - Ac3H11_869 0.15 -4.2
151,755 + Ac3H11_869 0.17 +1.0
151,755 + Ac3H11_869 0.17 -1.4
151,798 + Ac3H11_869 0.21 -1.5
151,798 + Ac3H11_869 0.21 +1.1
151,798 + Ac3H11_869 0.21 -4.1
151,798 + Ac3H11_869 0.21 -2.1
151,798 + Ac3H11_869 0.21 -1.2
151,798 + Ac3H11_869 0.21 +0.8
151,798 + Ac3H11_869 0.21 +0.5
151,798 + Ac3H11_869 0.21 +0.1
151,798 + Ac3H11_869 0.21 +1.9
151,798 + Ac3H11_869 0.21 -2.9
151,798 + Ac3H11_869 0.21 -2.4
151,798 + Ac3H11_869 0.21 +1.9
151,798 + Ac3H11_869 0.21 -0.6
151,798 + Ac3H11_869 0.21 +0.5
151,798 + Ac3H11_869 0.21 -3.6
151,798 + Ac3H11_869 0.21 +1.6
151,798 + Ac3H11_869 0.21 +1.2
151,798 + Ac3H11_869 0.21 -1.4
151,798 + Ac3H11_869 0.21 -1.5
151,798 + Ac3H11_869 0.21 +1.0
151,798 + Ac3H11_869 0.21 -2.5
151,798 + Ac3H11_869 0.21 +0.3
151,798 + Ac3H11_869 0.21 -2.6
151,798 + Ac3H11_869 0.21 -0.6
151,799 - Ac3H11_869 0.21 -1.9
151,799 - Ac3H11_869 0.21 +0.3
151,799 - Ac3H11_869 0.21 +3.9
151,799 - Ac3H11_869 0.21 -1.2
151,799 - Ac3H11_869 0.21 -1.1
151,799 - Ac3H11_869 0.21 +1.0
151,799 - Ac3H11_869 0.21 +0.5
151,799 - Ac3H11_869 0.21 +1.3
151,799 - Ac3H11_869 0.21 +1.2
151,799 - Ac3H11_869 0.21 -1.5
151,799 - Ac3H11_869 0.21 +0.1
151,799 - Ac3H11_869 0.21 +2.2
151,799 - Ac3H11_869 0.21 +1.3
151,799 - Ac3H11_869 0.21 -0.4
151,799 - Ac3H11_869 0.21 +0.6
151,799 - Ac3H11_869 0.21 +0.0
151,799 - Ac3H11_869 0.21 -0.3
151,799 - Ac3H11_869 0.21 +0.3
151,799 - Ac3H11_869 0.21 +1.0
151,799 - Ac3H11_869 0.21 -1.1
151,799 - Ac3H11_869 0.21 -0.6
151,799 - Ac3H11_869 0.21 +1.7
151,799 - Ac3H11_869 0.21 -1.1
151,799 - Ac3H11_869 0.21 -0.9
151,799 - Ac3H11_869 0.21 -3.5
151,799 - Ac3H11_869 0.21 +0.2
151,799 - Ac3H11_869 0.21 -2.8
151,799 - Ac3H11_869 0.21 -2.9
151,799 - Ac3H11_869 0.21 +1.0
151,799 - Ac3H11_869 0.21 -1.0
151,799 - Ac3H11_869 0.21 -0.8
151,799 - Ac3H11_869 0.21 -1.2
152,284 + Ac3H11_869 0.72 -3.0
152,284 + Ac3H11_869 0.72 +1.1
152,284 + Ac3H11_869 0.72 -1.3
152,284 + Ac3H11_869 0.72 -0.0
152,284 + Ac3H11_869 0.72 +1.3
152,284 + Ac3H11_869 0.72 +1.9
152,285 - Ac3H11_869 0.72 +1.0
152,285 - Ac3H11_869 0.72 -0.1
152,285 - Ac3H11_869 0.72 +1.5

Or see this region's nucleotide sequence