Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_841

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_840 and Ac3H11_841 are separated by 17 nucleotidesAc3H11_841 and Ac3H11_842 are separated by 181 nucleotides Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745 _840 Ac3H11_841 - hypothetical protein, at 122,763 to 123,155 _841 Ac3H11_842 - Predicted transcriptional regulator, at 123,337 to 124,068 _842 Position (kb) 122 123 124Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 121.788 kb on - strandat 121.788 kb on - strandat 121.798 kb on + strandat 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 122.009 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.726 kb on + strandat 122.726 kb on + strandat 123.036 kb on - strand, within Ac3H11_841at 123.118 kb on + strandat 123.119 kb on - strandat 123.119 kb on - strandat 123.119 kb on - strandat 123.323 kb on - strandat 123.323 kb on - strandat 123.398 kb on + strandat 123.398 kb on + strandat 123.566 kb on + strand, within Ac3H11_842at 123.567 kb on - strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 124.004 kb on + strandat 124.004 kb on + strandat 124.004 kb on + strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.114 kb on - strandat 124.114 kb on - strandat 124.118 kb on - strandat 124.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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121,788 - -0.4
121,788 - +2.9
121,798 + +1.0
121,859 + Ac3H11_840 0.14 +1.6
121,859 + Ac3H11_840 0.14 +0.5
121,859 + Ac3H11_840 0.14 -3.7
121,859 + Ac3H11_840 0.14 +2.1
121,859 + Ac3H11_840 0.14 -1.7
121,859 + Ac3H11_840 0.14 +2.0
121,859 + Ac3H11_840 0.14 +2.0
121,859 + Ac3H11_840 0.14 +0.5
121,859 + Ac3H11_840 0.14 -1.1
121,860 - Ac3H11_840 0.14 -2.5
121,860 - Ac3H11_840 0.14 +2.8
121,860 - Ac3H11_840 0.14 -2.6
121,860 - Ac3H11_840 0.14 -0.3
121,860 - Ac3H11_840 0.14 -2.2
122,009 + Ac3H11_840 0.28 +0.5
122,279 + Ac3H11_840 0.55 +1.8
122,279 + Ac3H11_840 0.55 -4.0
122,280 - Ac3H11_840 0.55 -1.6
122,280 - Ac3H11_840 0.55 +1.1
122,280 - Ac3H11_840 0.55 +1.6
122,701 + -1.1
122,701 + -0.3
122,701 + +1.8
122,701 + +0.9
122,701 + +1.0
122,701 + +1.4
122,702 - +2.1
122,702 - +0.1
122,702 - -1.7
122,702 - +0.1
122,702 - +0.6
122,702 - +1.0
122,726 + -1.9
122,726 + -0.4
123,036 - Ac3H11_841 0.69 -3.1
123,118 + +1.1
123,119 - +1.6
123,119 - -1.5
123,119 - -2.2
123,323 - -1.2
123,323 - -2.7
123,398 + +1.1
123,398 + -1.3
123,566 + Ac3H11_842 0.31 -0.2
123,567 - Ac3H11_842 0.31 -0.7
123,593 + Ac3H11_842 0.35 +0.1
123,593 + Ac3H11_842 0.35 -2.7
123,593 + Ac3H11_842 0.35 +0.5
123,594 - Ac3H11_842 0.35 -0.3
123,594 - Ac3H11_842 0.35 -0.3
123,594 - Ac3H11_842 0.35 +1.3
123,594 - Ac3H11_842 0.35 +0.9
123,594 - Ac3H11_842 0.35 +2.0
123,704 + Ac3H11_842 0.50 -1.5
123,704 + Ac3H11_842 0.50 -1.5
123,704 + Ac3H11_842 0.50 -2.3
123,705 - Ac3H11_842 0.50 +2.7
123,705 - Ac3H11_842 0.50 -0.3
123,735 - Ac3H11_842 0.54 -2.7
123,735 - Ac3H11_842 0.54 -1.9
123,735 - Ac3H11_842 0.54 -0.5
124,004 + +1.0
124,004 + -1.1
124,004 + -0.9
124,005 - +1.7
124,005 - +1.7
124,005 - -2.4
124,005 - -2.7
124,114 - +0.1
124,114 - +0.1
124,118 - +0.7
124,118 - +2.9

Or see this region's nucleotide sequence