Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_69

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_68 and Ac3H11_69 are separated by 16 nucleotidesAc3H11_69 and Ac3H11_70 are separated by 93 nucleotides Ac3H11_68 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 70,564 to 71,550 _68 Ac3H11_69 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 71,567 to 72,640 _69 Ac3H11_70 - D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22), at 72,734 to 74,878 _70 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 70.826 kb on - strand, within Ac3H11_68at 71.443 kb on + strand, within Ac3H11_68at 71.444 kb on - strand, within Ac3H11_68at 71.488 kb on - strandat 71.750 kb on + strand, within Ac3H11_69at 71.751 kb on - strand, within Ac3H11_69at 72.116 kb on + strand, within Ac3H11_69at 72.116 kb on + strand, within Ac3H11_69at 72.117 kb on - strand, within Ac3H11_69at 72.119 kb on + strand, within Ac3H11_69at 72.119 kb on + strand, within Ac3H11_69at 72.119 kb on + strand, within Ac3H11_69at 72.254 kb on + strand, within Ac3H11_69at 72.255 kb on - strand, within Ac3H11_69at 72.329 kb on + strand, within Ac3H11_69at 72.330 kb on - strand, within Ac3H11_69at 72.414 kb on - strand, within Ac3H11_69at 72.414 kb on - strand, within Ac3H11_69at 72.459 kb on - strand, within Ac3H11_69at 72.578 kb on + strandat 72.579 kb on - strandat 72.579 kb on - strandat 72.884 kb on + strandat 72.884 kb on + strandat 72.884 kb on + strandat 72.884 kb on + strandat 72.884 kb on + strandat 72.885 kb on - strandat 73.068 kb on - strand, within Ac3H11_70at 73.260 kb on - strand, within Ac3H11_70at 73.260 kb on - strand, within Ac3H11_70at 73.314 kb on - strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.565 kb on + strand, within Ac3H11_70at 73.566 kb on - strand, within Ac3H11_70at 73.566 kb on - strand, within Ac3H11_70

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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70,826 - Ac3H11_68 0.27 -0.7
71,443 + Ac3H11_68 0.89 -1.8
71,444 - Ac3H11_68 0.89 +1.5
71,488 - +1.7
71,750 + Ac3H11_69 0.17 +1.5
71,751 - Ac3H11_69 0.17 -0.1
72,116 + Ac3H11_69 0.51 +1.7
72,116 + Ac3H11_69 0.51 +1.1
72,117 - Ac3H11_69 0.51 -2.9
72,119 + Ac3H11_69 0.51 +1.1
72,119 + Ac3H11_69 0.51 -1.5
72,119 + Ac3H11_69 0.51 +0.8
72,254 + Ac3H11_69 0.64 -1.8
72,255 - Ac3H11_69 0.64 +3.8
72,329 + Ac3H11_69 0.71 -1.9
72,330 - Ac3H11_69 0.71 +2.5
72,414 - Ac3H11_69 0.79 +0.3
72,414 - Ac3H11_69 0.79 +2.1
72,459 - Ac3H11_69 0.83 +0.1
72,578 + +0.8
72,579 - -0.7
72,579 - +1.2
72,884 + -1.0
72,884 + -0.0
72,884 + +1.2
72,884 + -2.0
72,884 + -0.6
72,885 - +1.0
73,068 - Ac3H11_70 0.16 +2.0
73,260 - Ac3H11_70 0.25 -0.5
73,260 - Ac3H11_70 0.25 -3.2
73,314 - Ac3H11_70 0.27 -1.2
73,565 + Ac3H11_70 0.39 +0.1
73,565 + Ac3H11_70 0.39 +1.9
73,565 + Ac3H11_70 0.39 -1.8
73,565 + Ac3H11_70 0.39 -1.3
73,565 + Ac3H11_70 0.39 +2.1
73,565 + Ac3H11_70 0.39 +0.3
73,566 - Ac3H11_70 0.39 -0.5
73,566 - Ac3H11_70 0.39 -2.4

Or see this region's nucleotide sequence