Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4468

Experiment: Cisplatin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4466 and Ac3H11_4467 are separated by 125 nucleotidesAc3H11_4467 and Ac3H11_4468 are separated by 108 nucleotidesAc3H11_4468 and Ac3H11_4469 overlap by 1 nucleotidesAc3H11_4469 and Ac3H11_4470 are separated by 231 nucleotides Ac3H11_4466 - rRNA small subunit methyltransferase I, at 50,084 to 51,037 _4466 Ac3H11_4467 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 51,163 to 51,468 _4467 Ac3H11_4468 - Phosphoheptose isomerase (EC 5.3.1.-), at 51,577 to 52,176 _4468 Ac3H11_4469 - 21 kDa hemolysin precursor, at 52,176 to 52,841 _4469 Ac3H11_4470 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 53,073 to 53,987 _4470 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.727 kb on + strand, within Ac3H11_4466at 50.727 kb on + strand, within Ac3H11_4466at 50.958 kb on + strandat 50.958 kb on + strandat 50.958 kb on + strandat 50.958 kb on + strandat 50.958 kb on + strandat 50.977 kb on - strandat 51.367 kb on + strand, within Ac3H11_4467at 51.367 kb on + strand, within Ac3H11_4467at 51.368 kb on - strand, within Ac3H11_4467at 51.368 kb on - strand, within Ac3H11_4467at 51.466 kb on + strandat 51.466 kb on + strandat 51.466 kb on + strandat 51.466 kb on + strandat 51.466 kb on + strandat 51.466 kb on + strandat 51.467 kb on - strandat 51.467 kb on - strandat 51.467 kb on - strandat 51.467 kb on - strandat 51.502 kb on + strandat 51.502 kb on + strandat 51.502 kb on + strandat 51.503 kb on - strandat 51.503 kb on - strandat 51.538 kb on - strandat 51.538 kb on - strandat 51.549 kb on - strandat 51.563 kb on - strandat 51.563 kb on - strandat 51.563 kb on - strandat 51.563 kb on - strandat 51.628 kb on + strandat 51.628 kb on + strandat 51.628 kb on + strandat 51.628 kb on + strandat 51.629 kb on - strandat 52.151 kb on + strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.152 kb on - strandat 52.419 kb on + strand, within Ac3H11_4469at 52.419 kb on + strand, within Ac3H11_4469at 52.419 kb on + strand, within Ac3H11_4469at 52.420 kb on - strand, within Ac3H11_4469at 52.420 kb on - strand, within Ac3H11_4469at 52.665 kb on + strand, within Ac3H11_4469at 52.665 kb on + strand, within Ac3H11_4469at 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.074 kb on + strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.075 kb on - strandat 53.102 kb on + strandat 53.103 kb on - strandat 53.103 kb on - strandat 53.140 kb on + strandat 53.140 kb on + strandat 53.140 kb on + strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strandat 53.141 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
remove
50,727 + Ac3H11_4466 0.67 +0.1
50,727 + Ac3H11_4466 0.67 -0.3
50,958 + -2.2
50,958 + -0.3
50,958 + -0.7
50,958 + -0.3
50,958 + +0.1
50,977 - +2.6
51,367 + Ac3H11_4467 0.67 +0.8
51,367 + Ac3H11_4467 0.67 -1.3
51,368 - Ac3H11_4467 0.67 -2.9
51,368 - Ac3H11_4467 0.67 +1.2
51,466 + +3.6
51,466 + +1.3
51,466 + +1.2
51,466 + -0.0
51,466 + -0.8
51,466 + -1.8
51,467 - +1.9
51,467 - +1.5
51,467 - -0.6
51,467 - -0.8
51,502 + -1.9
51,502 + +1.1
51,502 + +2.5
51,503 - -1.9
51,503 - -2.4
51,538 - +0.8
51,538 - -1.3
51,549 - +0.6
51,563 - +0.3
51,563 - +2.9
51,563 - -0.6
51,563 - +1.1
51,628 + -2.0
51,628 + -2.2
51,628 + +1.0
51,628 + -0.9
51,629 - -2.3
52,151 + +0.7
52,152 - +0.4
52,152 - +0.7
52,152 - -3.6
52,152 - -1.2
52,419 + Ac3H11_4469 0.36 -1.7
52,419 + Ac3H11_4469 0.36 -1.0
52,419 + Ac3H11_4469 0.36 -1.5
52,420 - Ac3H11_4469 0.37 -2.3
52,420 - Ac3H11_4469 0.37 -1.2
52,665 + Ac3H11_4469 0.73 -1.9
52,665 + Ac3H11_4469 0.73 -1.5
53,074 + +1.9
53,074 + +1.0
53,074 + -0.6
53,074 + -1.4
53,074 + -2.0
53,074 + +0.1
53,074 + -0.4
53,074 + +0.3
53,074 + -0.5
53,074 + +0.9
53,075 - +1.0
53,075 - -0.1
53,075 - +1.8
53,075 - -2.7
53,102 + -1.1
53,103 - +1.2
53,103 - +0.5
53,140 + +2.0
53,140 + -2.6
53,140 + +0.7
53,141 - -0.2
53,141 - +0.7
53,141 - -3.5
53,141 - -2.7
53,141 - +0.3
53,141 - -3.1

Or see this region's nucleotide sequence