Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4401

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4400 and Ac3H11_4401 are separated by 50 nucleotidesAc3H11_4401 and Ac3H11_4402 are separated by 175 nucleotidesAc3H11_4402 and Ac3H11_4403 overlap by 4 nucleotides Ac3H11_4400 - putative LysR-family transcriptional regulator, at 196,833 to 197,729 _4400 Ac3H11_4401 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 197,780 to 198,607 _4401 Ac3H11_4402 - Uracil-DNA glycosylase, family 1, at 198,783 to 199,340 _4402 Ac3H11_4403 - hypothetical protein, at 199,337 to 199,966 _4403 Position (kb) 197 198 199Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.134 kb on + strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.143 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400at 197.782 kb on - strandat 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 198.099 kb on + strand, within Ac3H11_4401at 198.099 kb on + strand, within Ac3H11_4401at 198.100 kb on - strand, within Ac3H11_4401at 198.201 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.668 kb on + strandat 198.668 kb on + strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.710 kb on + strandat 198.739 kb on + strandat 198.739 kb on + strandat 198.739 kb on + strandat 198.740 kb on - strandat 198.835 kb on + strandat 198.835 kb on + strandat 198.836 kb on - strandat 198.836 kb on - strandat 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strandat 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.892 kb on + strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.893 kb on - strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.898 kb on + strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.899 kb on - strand, within Ac3H11_4402at 198.916 kb on + strand, within Ac3H11_4402at 198.917 kb on - strand, within Ac3H11_4402at 198.917 kb on - strand, within Ac3H11_4402at 198.917 kb on - strand, within Ac3H11_4402at 198.917 kb on - strand, within Ac3H11_4402at 198.917 kb on - strand, within Ac3H11_4402at 199.072 kb on + strand, within Ac3H11_4402at 199.072 kb on + strand, within Ac3H11_4402at 199.073 kb on - strand, within Ac3H11_4402at 199.073 kb on - strand, within Ac3H11_4402at 199.073 kb on - strand, within Ac3H11_4402at 199.073 kb on - strand, within Ac3H11_4402at 199.246 kb on + strand, within Ac3H11_4402at 199.246 kb on + strand, within Ac3H11_4402at 199.246 kb on + strand, within Ac3H11_4402at 199.246 kb on + strand, within Ac3H11_4402at 199.246 kb on + strand, within Ac3H11_4402at 199.247 kb on - strand, within Ac3H11_4402at 199.371 kb on + strandat 199.371 kb on + strandat 199.371 kb on + strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.372 kb on - strandat 199.413 kb on + strand, within Ac3H11_4403at 199.413 kb on + strand, within Ac3H11_4403at 199.413 kb on + strand, within Ac3H11_4403at 199.414 kb on - strand, within Ac3H11_4403at 199.414 kb on - strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.416 kb on + strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.417 kb on - strand, within Ac3H11_4403at 199.440 kb on + strand, within Ac3H11_4403at 199.440 kb on + strand, within Ac3H11_4403at 199.440 kb on + strand, within Ac3H11_4403at 199.440 kb on + strand, within Ac3H11_4403at 199.441 kb on - strand, within Ac3H11_4403at 199.441 kb on - strand, within Ac3H11_4403at 199.441 kb on - strand, within Ac3H11_4403at 199.518 kb on + strand, within Ac3H11_4403at 199.518 kb on + strand, within Ac3H11_4403at 199.519 kb on - strand, within Ac3H11_4403

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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197,020 + Ac3H11_4400 0.21 +1.0
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -2.5
197,020 + Ac3H11_4400 0.21 +1.1
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -4.5
197,020 + Ac3H11_4400 0.21 -4.0
197,020 + Ac3H11_4400 0.21 -1.0
197,020 + Ac3H11_4400 0.21 +2.7
197,020 + Ac3H11_4400 0.21 -0.8
197,020 + Ac3H11_4400 0.21 +1.9
197,020 + Ac3H11_4400 0.21 -2.3
197,020 + Ac3H11_4400 0.21 +0.5
197,021 - Ac3H11_4400 0.21 -0.6
197,021 - Ac3H11_4400 0.21 -2.1
197,021 - Ac3H11_4400 0.21 +0.6
197,021 - Ac3H11_4400 0.21 -1.3
197,021 - Ac3H11_4400 0.21 -3.4
197,021 - Ac3H11_4400 0.21 -2.7
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -0.3
197,021 - Ac3H11_4400 0.21 -0.3
197,026 + Ac3H11_4400 0.22 -1.1
197,026 + Ac3H11_4400 0.22 +0.8
197,027 - Ac3H11_4400 0.22 +0.5
197,027 - Ac3H11_4400 0.22 +1.9
197,134 + Ac3H11_4400 0.34 +1.2
197,135 - Ac3H11_4400 0.34 +0.1
197,135 - Ac3H11_4400 0.34 -0.1
197,143 + Ac3H11_4400 0.35 -0.8
197,290 + Ac3H11_4400 0.51 +0.7
197,290 + Ac3H11_4400 0.51 +2.5
197,290 + Ac3H11_4400 0.51 +1.9
197,291 - Ac3H11_4400 0.51 +1.0
197,291 - Ac3H11_4400 0.51 +0.7
197,782 - +1.9
197,868 + Ac3H11_4401 0.11 -4.4
197,868 + Ac3H11_4401 0.11 -2.7
197,868 + Ac3H11_4401 0.11 -4.9
197,868 + Ac3H11_4401 0.11 -2.6
197,868 + Ac3H11_4401 0.11 -3.7
197,869 - Ac3H11_4401 0.11 -5.2
197,869 - Ac3H11_4401 0.11 -2.9
197,869 - Ac3H11_4401 0.11 -1.5
197,869 - Ac3H11_4401 0.11 -0.3
197,869 - Ac3H11_4401 0.11 -1.5
197,869 - Ac3H11_4401 0.11 -0.9
198,099 + Ac3H11_4401 0.39 -2.5
198,099 + Ac3H11_4401 0.39 -3.3
198,100 - Ac3H11_4401 0.39 -1.1
198,201 + Ac3H11_4401 0.51 -4.1
198,486 + Ac3H11_4401 0.85 -3.5
198,486 + Ac3H11_4401 0.85 -3.2
198,486 + Ac3H11_4401 0.85 -2.0
198,486 + Ac3H11_4401 0.85 -0.9
198,487 - Ac3H11_4401 0.85 -1.7
198,487 - Ac3H11_4401 0.85 -2.0
198,487 - Ac3H11_4401 0.85 -1.7
198,668 + -3.8
198,668 + -1.6
198,669 - +1.6
198,669 - +1.1
198,669 - +0.9
198,669 - +0.6
198,710 + -1.2
198,739 + -0.7
198,739 + +1.2
198,739 + +1.3
198,740 - -1.7
198,835 + -0.0
198,835 + +2.0
198,836 - -2.9
198,836 - +1.8
198,892 + Ac3H11_4402 0.20 -0.3
198,892 + Ac3H11_4402 0.20 +2.2
198,892 + Ac3H11_4402 0.20 -0.4
198,892 + Ac3H11_4402 0.20 +1.2
198,892 + Ac3H11_4402 0.20 -0.3
198,892 + +0.1
198,892 + Ac3H11_4402 0.20 -1.1
198,892 + Ac3H11_4402 0.20 +0.3
198,892 + Ac3H11_4402 0.20 +2.0
198,892 + Ac3H11_4402 0.20 -0.1
198,892 + Ac3H11_4402 0.20 -2.3
198,892 + Ac3H11_4402 0.20 +0.9
198,892 + Ac3H11_4402 0.20 +3.6
198,892 + Ac3H11_4402 0.20 +0.2
198,892 + Ac3H11_4402 0.20 +0.5
198,892 + Ac3H11_4402 0.20 -1.1
198,893 - Ac3H11_4402 0.20 -0.8
198,893 - Ac3H11_4402 0.20 -1.4
198,893 - Ac3H11_4402 0.20 +0.2
198,893 - Ac3H11_4402 0.20 +0.7
198,893 - Ac3H11_4402 0.20 +2.6
198,893 - Ac3H11_4402 0.20 -2.3
198,893 - Ac3H11_4402 0.20 +0.1
198,893 - Ac3H11_4402 0.20 +0.7
198,893 - Ac3H11_4402 0.20 +0.4
198,893 - Ac3H11_4402 0.20 -2.5
198,893 - Ac3H11_4402 0.20 +1.6
198,893 - Ac3H11_4402 0.20 -0.4
198,893 - Ac3H11_4402 0.20 +1.3
198,893 - Ac3H11_4402 0.20 +1.2
198,893 - Ac3H11_4402 0.20 -0.1
198,893 - Ac3H11_4402 0.20 +0.6
198,893 - Ac3H11_4402 0.20 +0.8
198,893 - Ac3H11_4402 0.20 -1.2
198,893 - Ac3H11_4402 0.20 +1.2
198,893 - Ac3H11_4402 0.20 +1.6
198,898 + Ac3H11_4402 0.21 +2.3
198,898 + Ac3H11_4402 0.21 -0.7
198,898 + Ac3H11_4402 0.21 -0.6
198,898 + Ac3H11_4402 0.21 +3.0
198,898 + Ac3H11_4402 0.21 -2.2
198,898 + Ac3H11_4402 0.21 -0.5
198,898 + Ac3H11_4402 0.21 +0.3
198,898 + Ac3H11_4402 0.21 -2.6
198,898 + Ac3H11_4402 0.21 -0.6
198,898 + Ac3H11_4402 0.21 +0.8
198,898 + Ac3H11_4402 0.21 +2.5
198,898 + Ac3H11_4402 0.21 -0.3
198,898 + Ac3H11_4402 0.21 +1.0
198,898 + Ac3H11_4402 0.21 +0.6
198,898 + Ac3H11_4402 0.21 +0.9
198,898 + Ac3H11_4402 0.21 +0.7
198,898 + Ac3H11_4402 0.21 +0.9
198,898 + Ac3H11_4402 0.21 -2.8
198,898 + Ac3H11_4402 0.21 +1.1
198,898 + Ac3H11_4402 0.21 -0.8
198,899 - Ac3H11_4402 0.21 -0.0
198,899 - Ac3H11_4402 0.21 +0.2
198,899 - Ac3H11_4402 0.21 -1.1
198,899 - Ac3H11_4402 0.21 +2.4
198,899 - Ac3H11_4402 0.21 +0.9
198,899 - Ac3H11_4402 0.21 -2.5
198,899 - Ac3H11_4402 0.21 +0.6
198,899 - Ac3H11_4402 0.21 +0.7
198,899 - Ac3H11_4402 0.21 -2.7
198,899 - Ac3H11_4402 0.21 -0.3
198,899 - Ac3H11_4402 0.21 +2.2
198,916 + Ac3H11_4402 0.24 +0.7
198,917 - Ac3H11_4402 0.24 +1.8
198,917 - Ac3H11_4402 0.24 -2.6
198,917 - Ac3H11_4402 0.24 -1.9
198,917 - Ac3H11_4402 0.24 +1.0
198,917 - Ac3H11_4402 0.24 +1.2
199,072 + Ac3H11_4402 0.52 -0.0
199,072 + Ac3H11_4402 0.52 -0.1
199,073 - Ac3H11_4402 0.52 -3.0
199,073 - Ac3H11_4402 0.52 -3.6
199,073 - Ac3H11_4402 0.52 +2.5
199,073 - Ac3H11_4402 0.52 -1.8
199,246 + Ac3H11_4402 0.83 -0.0
199,246 + Ac3H11_4402 0.83 +1.6
199,246 + Ac3H11_4402 0.83 -2.9
199,246 + Ac3H11_4402 0.83 -2.7
199,246 + Ac3H11_4402 0.83 +1.0
199,247 - Ac3H11_4402 0.83 +2.3
199,371 + -0.6
199,371 + +1.2
199,371 + -2.5
199,372 - -1.6
199,372 - +2.7
199,372 - -0.2
199,372 - +2.5
199,372 - -0.7
199,372 - +0.3
199,372 - -2.1
199,413 + Ac3H11_4403 0.12 +1.2
199,413 + Ac3H11_4403 0.12 +2.2
199,413 + Ac3H11_4403 0.12 -1.1
199,414 - Ac3H11_4403 0.12 -1.7
199,414 - Ac3H11_4403 0.12 +0.6
199,416 + Ac3H11_4403 0.13 -0.0
199,416 + Ac3H11_4403 0.13 -1.3
199,416 + Ac3H11_4403 0.13 -2.9
199,416 + Ac3H11_4403 0.13 +0.8
199,416 + Ac3H11_4403 0.13 +0.4
199,416 + Ac3H11_4403 0.13 +0.7
199,416 + Ac3H11_4403 0.13 +1.1
199,416 + Ac3H11_4403 0.13 +0.3
199,416 + Ac3H11_4403 0.13 -2.5
199,416 + Ac3H11_4403 0.13 -0.7
199,416 + Ac3H11_4403 0.13 -0.3
199,416 + Ac3H11_4403 0.13 -3.1
199,417 - Ac3H11_4403 0.13 +1.1
199,417 - Ac3H11_4403 0.13 +1.0
199,417 - Ac3H11_4403 0.13 -3.7
199,417 - Ac3H11_4403 0.13 -0.4
199,417 - Ac3H11_4403 0.13 -3.5
199,417 - Ac3H11_4403 0.13 +1.1
199,417 - Ac3H11_4403 0.13 +0.9
199,417 - Ac3H11_4403 0.13 +2.3
199,417 - Ac3H11_4403 0.13 +1.5
199,417 - Ac3H11_4403 0.13 -2.7
199,417 - Ac3H11_4403 0.13 -1.5
199,417 - Ac3H11_4403 0.13 -2.5
199,440 + Ac3H11_4403 0.16 -2.2
199,440 + Ac3H11_4403 0.16 -0.9
199,440 + Ac3H11_4403 0.16 +0.8
199,440 + Ac3H11_4403 0.16 +0.2
199,441 - Ac3H11_4403 0.17 -0.9
199,441 - Ac3H11_4403 0.17 -3.0
199,441 - Ac3H11_4403 0.17 -0.8
199,518 + Ac3H11_4403 0.29 +2.9
199,518 + Ac3H11_4403 0.29 +1.2
199,519 - Ac3H11_4403 0.29 +1.0

Or see this region's nucleotide sequence