Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4400

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4399 and Ac3H11_4400 are separated by 146 nucleotidesAc3H11_4400 and Ac3H11_4401 are separated by 50 nucleotides Ac3H11_4399 - Tricarboxylate transport protein TctC, at 195,709 to 196,686 _4399 Ac3H11_4400 - putative LysR-family transcriptional regulator, at 196,833 to 197,729 _4400 Ac3H11_4401 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 197,780 to 198,607 _4401 Position (kb) 196 197 198Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 195.947 kb on + strand, within Ac3H11_4399at 195.947 kb on + strand, within Ac3H11_4399at 195.948 kb on - strand, within Ac3H11_4399at 195.948 kb on - strand, within Ac3H11_4399at 196.076 kb on + strand, within Ac3H11_4399at 196.128 kb on - strand, within Ac3H11_4399at 196.214 kb on + strand, within Ac3H11_4399at 196.214 kb on + strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.415 kb on + strand, within Ac3H11_4399at 196.416 kb on - strand, within Ac3H11_4399at 196.416 kb on - strand, within Ac3H11_4399at 196.552 kb on - strand, within Ac3H11_4399at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.134 kb on + strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.143 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400at 197.782 kb on - strandat 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.868 kb on + strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 197.869 kb on - strand, within Ac3H11_4401at 198.099 kb on + strand, within Ac3H11_4401at 198.099 kb on + strand, within Ac3H11_4401at 198.100 kb on - strand, within Ac3H11_4401at 198.201 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.486 kb on + strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.487 kb on - strand, within Ac3H11_4401at 198.668 kb on + strandat 198.668 kb on + strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.669 kb on - strandat 198.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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195,947 + Ac3H11_4399 0.24 -0.3
195,947 + Ac3H11_4399 0.24 +0.8
195,948 - Ac3H11_4399 0.24 +1.0
195,948 - Ac3H11_4399 0.24 +2.1
196,076 + Ac3H11_4399 0.38 -1.8
196,128 - Ac3H11_4399 0.43 +0.0
196,214 + Ac3H11_4399 0.52 -1.7
196,214 + Ac3H11_4399 0.52 -3.4
196,215 - Ac3H11_4399 0.52 -2.9
196,215 - Ac3H11_4399 0.52 -1.1
196,215 - Ac3H11_4399 0.52 -2.7
196,215 - Ac3H11_4399 0.52 -1.1
196,349 + Ac3H11_4399 0.65 -2.8
196,349 + Ac3H11_4399 0.65 -0.3
196,349 + Ac3H11_4399 0.65 -2.3
196,349 + Ac3H11_4399 0.65 +0.7
196,349 + Ac3H11_4399 0.65 -0.9
196,349 + Ac3H11_4399 0.65 +1.3
196,350 - Ac3H11_4399 0.66 -2.7
196,350 - Ac3H11_4399 0.66 +1.1
196,350 - Ac3H11_4399 0.66 -1.2
196,350 - Ac3H11_4399 0.66 -2.0
196,415 + Ac3H11_4399 0.72 +0.7
196,416 - Ac3H11_4399 0.72 -0.0
196,416 - Ac3H11_4399 0.72 +1.6
196,552 - Ac3H11_4399 0.86 +1.9
197,020 + Ac3H11_4400 0.21 +1.0
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -2.5
197,020 + Ac3H11_4400 0.21 +1.1
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -4.5
197,020 + Ac3H11_4400 0.21 -4.0
197,020 + Ac3H11_4400 0.21 -1.0
197,020 + Ac3H11_4400 0.21 +2.7
197,020 + Ac3H11_4400 0.21 -0.8
197,020 + Ac3H11_4400 0.21 +1.9
197,020 + Ac3H11_4400 0.21 -2.3
197,020 + Ac3H11_4400 0.21 +0.5
197,021 - Ac3H11_4400 0.21 -0.6
197,021 - Ac3H11_4400 0.21 -2.1
197,021 - Ac3H11_4400 0.21 +0.6
197,021 - Ac3H11_4400 0.21 -1.3
197,021 - Ac3H11_4400 0.21 -3.4
197,021 - Ac3H11_4400 0.21 -2.7
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -0.3
197,021 - Ac3H11_4400 0.21 -0.3
197,026 + Ac3H11_4400 0.22 -1.1
197,026 + Ac3H11_4400 0.22 +0.8
197,027 - Ac3H11_4400 0.22 +0.5
197,027 - Ac3H11_4400 0.22 +1.9
197,134 + Ac3H11_4400 0.34 +1.2
197,135 - Ac3H11_4400 0.34 +0.1
197,135 - Ac3H11_4400 0.34 -0.1
197,143 + Ac3H11_4400 0.35 -0.8
197,290 + Ac3H11_4400 0.51 +0.7
197,290 + Ac3H11_4400 0.51 +2.5
197,290 + Ac3H11_4400 0.51 +1.9
197,291 - Ac3H11_4400 0.51 +1.0
197,291 - Ac3H11_4400 0.51 +0.7
197,782 - +1.9
197,868 + Ac3H11_4401 0.11 -4.4
197,868 + Ac3H11_4401 0.11 -2.7
197,868 + Ac3H11_4401 0.11 -4.9
197,868 + Ac3H11_4401 0.11 -2.6
197,868 + Ac3H11_4401 0.11 -3.7
197,869 - Ac3H11_4401 0.11 -5.2
197,869 - Ac3H11_4401 0.11 -2.9
197,869 - Ac3H11_4401 0.11 -1.5
197,869 - Ac3H11_4401 0.11 -0.3
197,869 - Ac3H11_4401 0.11 -1.5
197,869 - Ac3H11_4401 0.11 -0.9
198,099 + Ac3H11_4401 0.39 -2.5
198,099 + Ac3H11_4401 0.39 -3.3
198,100 - Ac3H11_4401 0.39 -1.1
198,201 + Ac3H11_4401 0.51 -4.1
198,486 + Ac3H11_4401 0.85 -3.5
198,486 + Ac3H11_4401 0.85 -3.2
198,486 + Ac3H11_4401 0.85 -2.0
198,486 + Ac3H11_4401 0.85 -0.9
198,487 - Ac3H11_4401 0.85 -1.7
198,487 - Ac3H11_4401 0.85 -2.0
198,487 - Ac3H11_4401 0.85 -1.7
198,668 + -3.8
198,668 + -1.6
198,669 - +1.6
198,669 - +1.1
198,669 - +0.9
198,669 - +0.6
198,710 + -1.2

Or see this region's nucleotide sequence