Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4399

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4398 and Ac3H11_4399 overlap by 4 nucleotidesAc3H11_4399 and Ac3H11_4400 are separated by 146 nucleotides Ac3H11_4398 - ortholog of Bordetella pertussis (BX470248) BP3300, at 194,702 to 195,712 _4398 Ac3H11_4399 - Tricarboxylate transport protein TctC, at 195,709 to 196,686 _4399 Ac3H11_4400 - putative LysR-family transcriptional regulator, at 196,833 to 197,729 _4400 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 194.791 kb on - strandat 194.791 kb on - strandat 194.865 kb on + strand, within Ac3H11_4398at 194.865 kb on + strand, within Ac3H11_4398at 194.865 kb on + strand, within Ac3H11_4398at 194.866 kb on - strand, within Ac3H11_4398at 195.189 kb on + strand, within Ac3H11_4398at 195.189 kb on + strand, within Ac3H11_4398at 195.189 kb on + strand, within Ac3H11_4398at 195.190 kb on - strand, within Ac3H11_4398at 195.215 kb on + strand, within Ac3H11_4398at 195.215 kb on + strand, within Ac3H11_4398at 195.216 kb on - strand, within Ac3H11_4398at 195.216 kb on - strand, within Ac3H11_4398at 195.216 kb on - strand, within Ac3H11_4398at 195.216 kb on - strand, within Ac3H11_4398at 195.746 kb on + strandat 195.746 kb on + strandat 195.746 kb on + strandat 195.746 kb on + strandat 195.747 kb on - strandat 195.747 kb on - strandat 195.747 kb on - strandat 195.747 kb on - strandat 195.747 kb on - strandat 195.747 kb on - strandat 195.947 kb on + strand, within Ac3H11_4399at 195.947 kb on + strand, within Ac3H11_4399at 195.948 kb on - strand, within Ac3H11_4399at 195.948 kb on - strand, within Ac3H11_4399at 196.076 kb on + strand, within Ac3H11_4399at 196.128 kb on - strand, within Ac3H11_4399at 196.214 kb on + strand, within Ac3H11_4399at 196.214 kb on + strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.215 kb on - strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.349 kb on + strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.350 kb on - strand, within Ac3H11_4399at 196.415 kb on + strand, within Ac3H11_4399at 196.416 kb on - strand, within Ac3H11_4399at 196.416 kb on - strand, within Ac3H11_4399at 196.552 kb on - strand, within Ac3H11_4399at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.020 kb on + strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.021 kb on - strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.026 kb on + strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.027 kb on - strand, within Ac3H11_4400at 197.134 kb on + strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.135 kb on - strand, within Ac3H11_4400at 197.143 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.290 kb on + strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400at 197.291 kb on - strand, within Ac3H11_4400

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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194,791 - +1.5
194,791 - -1.7
194,865 + Ac3H11_4398 0.16 -0.8
194,865 + Ac3H11_4398 0.16 +2.1
194,865 + Ac3H11_4398 0.16 -2.7
194,866 - Ac3H11_4398 0.16 +0.1
195,189 + Ac3H11_4398 0.48 -1.1
195,189 + Ac3H11_4398 0.48 -0.3
195,189 + Ac3H11_4398 0.48 -2.7
195,190 - Ac3H11_4398 0.48 +2.6
195,215 + Ac3H11_4398 0.51 +0.2
195,215 + Ac3H11_4398 0.51 -1.5
195,216 - Ac3H11_4398 0.51 -1.7
195,216 - Ac3H11_4398 0.51 +1.7
195,216 - Ac3H11_4398 0.51 -1.3
195,216 - Ac3H11_4398 0.51 -1.4
195,746 + -0.6
195,746 + +0.3
195,746 + +1.2
195,746 + +0.8
195,747 - +1.4
195,747 - -1.1
195,747 - -0.3
195,747 - -0.3
195,747 - +0.0
195,747 - +1.8
195,947 + Ac3H11_4399 0.24 -0.3
195,947 + Ac3H11_4399 0.24 +0.8
195,948 - Ac3H11_4399 0.24 +1.0
195,948 - Ac3H11_4399 0.24 +2.1
196,076 + Ac3H11_4399 0.38 -1.8
196,128 - Ac3H11_4399 0.43 +0.0
196,214 + Ac3H11_4399 0.52 -1.7
196,214 + Ac3H11_4399 0.52 -3.4
196,215 - Ac3H11_4399 0.52 -2.9
196,215 - Ac3H11_4399 0.52 -1.1
196,215 - Ac3H11_4399 0.52 -2.7
196,215 - Ac3H11_4399 0.52 -1.1
196,349 + Ac3H11_4399 0.65 -2.8
196,349 + Ac3H11_4399 0.65 -0.3
196,349 + Ac3H11_4399 0.65 -2.3
196,349 + Ac3H11_4399 0.65 +0.7
196,349 + Ac3H11_4399 0.65 -0.9
196,349 + Ac3H11_4399 0.65 +1.3
196,350 - Ac3H11_4399 0.66 -2.7
196,350 - Ac3H11_4399 0.66 +1.1
196,350 - Ac3H11_4399 0.66 -1.2
196,350 - Ac3H11_4399 0.66 -2.0
196,415 + Ac3H11_4399 0.72 +0.7
196,416 - Ac3H11_4399 0.72 -0.0
196,416 - Ac3H11_4399 0.72 +1.6
196,552 - Ac3H11_4399 0.86 +1.9
197,020 + Ac3H11_4400 0.21 +1.0
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -2.5
197,020 + Ac3H11_4400 0.21 +1.1
197,020 + Ac3H11_4400 0.21 -1.5
197,020 + Ac3H11_4400 0.21 -4.5
197,020 + Ac3H11_4400 0.21 -4.0
197,020 + Ac3H11_4400 0.21 -1.0
197,020 + Ac3H11_4400 0.21 +2.7
197,020 + Ac3H11_4400 0.21 -0.8
197,020 + Ac3H11_4400 0.21 +1.9
197,020 + Ac3H11_4400 0.21 -2.3
197,020 + Ac3H11_4400 0.21 +0.5
197,021 - Ac3H11_4400 0.21 -0.6
197,021 - Ac3H11_4400 0.21 -2.1
197,021 - Ac3H11_4400 0.21 +0.6
197,021 - Ac3H11_4400 0.21 -1.3
197,021 - Ac3H11_4400 0.21 -3.4
197,021 - Ac3H11_4400 0.21 -2.7
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -1.0
197,021 - Ac3H11_4400 0.21 -0.3
197,021 - Ac3H11_4400 0.21 -0.3
197,026 + Ac3H11_4400 0.22 -1.1
197,026 + Ac3H11_4400 0.22 +0.8
197,027 - Ac3H11_4400 0.22 +0.5
197,027 - Ac3H11_4400 0.22 +1.9
197,134 + Ac3H11_4400 0.34 +1.2
197,135 - Ac3H11_4400 0.34 +0.1
197,135 - Ac3H11_4400 0.34 -0.1
197,143 + Ac3H11_4400 0.35 -0.8
197,290 + Ac3H11_4400 0.51 +0.7
197,290 + Ac3H11_4400 0.51 +2.5
197,290 + Ac3H11_4400 0.51 +1.9
197,291 - Ac3H11_4400 0.51 +1.0
197,291 - Ac3H11_4400 0.51 +0.7

Or see this region's nucleotide sequence