Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4396 and Ac3H11_4397 are separated by 272 nucleotides Ac3H11_4397 and Ac3H11_4398 are separated by 115 nucleotides Ac3H11_4398 and Ac3H11_4399 overlap by 4 nucleotides
Ac3H11_4396 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 191,909 to 193,873
_4396
Ac3H11_4397 - thioesterase superfamily, at 194,146 to 194,586
_4397
Ac3H11_4398 - ortholog of Bordetella pertussis (BX470248) BP3300, at 194,702 to 195,712
_4398
Ac3H11_4399 - Tricarboxylate transport protein TctC, at 195,709 to 196,686
_4399
Position (kb) 194
195
196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.806 kb on + strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.807 kb on - strand at 193.924 kb on + strand at 193.924 kb on + strand at 193.925 kb on - strand at 193.925 kb on - strand at 194.007 kb on + strand at 194.017 kb on + strand at 194.017 kb on + strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.018 kb on - strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.111 kb on + strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.112 kb on - strand at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.365 kb on + strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.366 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.462 kb on - strand, within Ac3H11_4397 at 194.636 kb on + strand at 194.636 kb on + strand at 194.637 kb on - strand at 194.646 kb on - strand at 194.703 kb on + strand at 194.703 kb on + strand at 194.703 kb on + strand at 194.704 kb on - strand at 194.791 kb on - strand at 194.791 kb on - strand at 194.865 kb on + strand, within Ac3H11_4398 at 194.865 kb on + strand, within Ac3H11_4398 at 194.865 kb on + strand, within Ac3H11_4398 at 194.866 kb on - strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.189 kb on + strand, within Ac3H11_4398 at 195.190 kb on - strand, within Ac3H11_4398 at 195.215 kb on + strand, within Ac3H11_4398 at 195.215 kb on + strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.216 kb on - strand, within Ac3H11_4398 at 195.746 kb on + strand at 195.746 kb on + strand at 195.746 kb on + strand at 195.746 kb on + strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.747 kb on - strand at 195.947 kb on + strand, within Ac3H11_4399 at 195.947 kb on + strand, within Ac3H11_4399 at 195.948 kb on - strand, within Ac3H11_4399 at 195.948 kb on - strand, within Ac3H11_4399 at 196.076 kb on + strand, within Ac3H11_4399 at 196.128 kb on - strand, within Ac3H11_4399 at 196.214 kb on + strand, within Ac3H11_4399 at 196.214 kb on + strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.215 kb on - strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.349 kb on + strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.350 kb on - strand, within Ac3H11_4399 at 196.415 kb on + strand, within Ac3H11_4399 at 196.416 kb on - strand, within Ac3H11_4399 at 196.416 kb on - strand, within Ac3H11_4399 at 196.552 kb on - strand, within Ac3H11_4399
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 193,806 + -0.4 193,806 + -3.2 193,806 + +0.9 193,806 + -1.2 193,806 + +1.8 193,806 + -1.4 193,807 - -1.6 193,807 - -0.3 193,807 - +0.4 193,807 - +1.6 193,807 - +1.0 193,807 - -4.1 193,924 + +0.2 193,924 + +0.4 193,925 - -0.5 193,925 - +0.6 194,007 + +1.2 194,017 + -2.9 194,017 + -0.0 194,018 - +4.0 194,018 - -1.3 194,018 - +1.3 194,018 - +1.7 194,018 - -0.1 194,018 - +0.1 194,111 + +0.2 194,111 + -0.8 194,111 + -1.9 194,111 + -0.8 194,111 + -1.9 194,111 + +0.2 194,112 - +2.9 194,112 - +0.4 194,112 - -0.1 194,112 - -2.7 194,365 + Ac3H11_4397 0.50 -1.8 194,365 + Ac3H11_4397 0.50 +0.1 194,365 + Ac3H11_4397 0.50 +0.9 194,365 + Ac3H11_4397 0.50 +0.3 194,365 + Ac3H11_4397 0.50 -0.6 194,366 - Ac3H11_4397 0.50 +0.2 194,366 - Ac3H11_4397 0.50 -3.0 194,366 - Ac3H11_4397 0.50 -0.7 194,366 - Ac3H11_4397 0.50 +1.7 194,462 - Ac3H11_4397 0.72 -0.8 194,462 - Ac3H11_4397 0.72 -4.2 194,462 - Ac3H11_4397 0.72 +1.5 194,462 - Ac3H11_4397 0.72 -3.3 194,462 - Ac3H11_4397 0.72 -1.3 194,636 + -0.3 194,636 + -0.9 194,637 - +0.5 194,646 - -0.1 194,703 + -0.5 194,703 + +0.8 194,703 + -1.3 194,704 - +1.0 194,791 - +1.5 194,791 - -1.7 194,865 + Ac3H11_4398 0.16 -0.8 194,865 + Ac3H11_4398 0.16 +2.1 194,865 + Ac3H11_4398 0.16 -2.7 194,866 - Ac3H11_4398 0.16 +0.1 195,189 + Ac3H11_4398 0.48 -1.1 195,189 + Ac3H11_4398 0.48 -0.3 195,189 + Ac3H11_4398 0.48 -2.7 195,190 - Ac3H11_4398 0.48 +2.6 195,215 + Ac3H11_4398 0.51 +0.2 195,215 + Ac3H11_4398 0.51 -1.5 195,216 - Ac3H11_4398 0.51 -1.7 195,216 - Ac3H11_4398 0.51 +1.7 195,216 - Ac3H11_4398 0.51 -1.3 195,216 - Ac3H11_4398 0.51 -1.4 195,746 + -0.6 195,746 + +0.3 195,746 + +1.2 195,746 + +0.8 195,747 - +1.4 195,747 - -1.1 195,747 - -0.3 195,747 - -0.3 195,747 - +0.0 195,747 - +1.8 195,947 + Ac3H11_4399 0.24 -0.3 195,947 + Ac3H11_4399 0.24 +0.8 195,948 - Ac3H11_4399 0.24 +1.0 195,948 - Ac3H11_4399 0.24 +2.1 196,076 + Ac3H11_4399 0.38 -1.8 196,128 - Ac3H11_4399 0.43 +0.0 196,214 + Ac3H11_4399 0.52 -1.7 196,214 + Ac3H11_4399 0.52 -3.4 196,215 - Ac3H11_4399 0.52 -2.9 196,215 - Ac3H11_4399 0.52 -1.1 196,215 - Ac3H11_4399 0.52 -2.7 196,215 - Ac3H11_4399 0.52 -1.1 196,349 + Ac3H11_4399 0.65 -2.8 196,349 + Ac3H11_4399 0.65 -0.3 196,349 + Ac3H11_4399 0.65 -2.3 196,349 + Ac3H11_4399 0.65 +0.7 196,349 + Ac3H11_4399 0.65 -0.9 196,349 + Ac3H11_4399 0.65 +1.3 196,350 - Ac3H11_4399 0.66 -2.7 196,350 - Ac3H11_4399 0.66 +1.1 196,350 - Ac3H11_4399 0.66 -1.2 196,350 - Ac3H11_4399 0.66 -2.0 196,415 + Ac3H11_4399 0.72 +0.7 196,416 - Ac3H11_4399 0.72 -0.0 196,416 - Ac3H11_4399 0.72 +1.6 196,552 - Ac3H11_4399 0.86 +1.9
Or see this region's nucleotide sequence