Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_433

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_431 and Ac3H11_432 are separated by 43 nucleotidesAc3H11_432 and Ac3H11_433 are separated by 21 nucleotidesAc3H11_433 and Ac3H11_434 are separated by 99 nucleotides Ac3H11_431 - Lipid-A-disaccharide synthase (EC 2.4.1.182), at 116,800 to 117,963 _431 Ac3H11_432 - Ribonuclease HII (EC 3.1.26.4), at 118,007 to 118,555 _432 Ac3H11_433 - 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-), at 118,577 to 119,350 _433 Ac3H11_434 - hypothetical protein, at 119,450 to 120,211 _434 Position (kb) 118 119 120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 118.171 kb on + strand, within Ac3H11_432at 118.171 kb on + strand, within Ac3H11_432at 118.172 kb on - strand, within Ac3H11_432at 118.172 kb on - strand, within Ac3H11_432at 118.434 kb on - strand, within Ac3H11_432at 118.434 kb on - strand, within Ac3H11_432at 118.434 kb on - strand, within Ac3H11_432at 118.508 kb on + strandat 118.508 kb on + strandat 118.508 kb on + strandat 118.508 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.572 kb on + strandat 118.573 kb on - strandat 118.788 kb on - strand, within Ac3H11_433at 119.004 kb on + strand, within Ac3H11_433at 119.004 kb on + strand, within Ac3H11_433at 119.005 kb on - strand, within Ac3H11_433at 119.005 kb on - strand, within Ac3H11_433at 119.007 kb on + strand, within Ac3H11_433at 119.007 kb on + strand, within Ac3H11_433at 119.008 kb on - strand, within Ac3H11_433at 119.008 kb on - strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.162 kb on + strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.163 kb on - strand, within Ac3H11_433at 119.451 kb on + strandat 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.851 kb on - strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.937 kb on + strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.938 kb on - strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.946 kb on + strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.947 kb on - strand, within Ac3H11_434at 119.965 kb on - strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.994 kb on + strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 119.995 kb on - strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.021 kb on + strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.022 kb on - strand, within Ac3H11_434at 120.180 kb on + strandat 120.180 kb on + strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.181 kb on - strandat 120.307 kb on + strandat 120.307 kb on + strandat 120.308 kb on - strandat 120.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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118,171 + Ac3H11_432 0.30 +1.0
118,171 + Ac3H11_432 0.30 +2.2
118,172 - Ac3H11_432 0.30 -2.5
118,172 - Ac3H11_432 0.30 -0.3
118,434 - Ac3H11_432 0.78 +0.0
118,434 - Ac3H11_432 0.78 +0.3
118,434 - Ac3H11_432 0.78 +3.3
118,508 + +1.3
118,508 + +1.3
118,508 + +1.3
118,508 + +2.5
118,572 + +0.9
118,572 + +0.2
118,572 + +0.3
118,573 - +0.6
118,788 - Ac3H11_433 0.27 +0.5
119,004 + Ac3H11_433 0.55 -1.7
119,004 + Ac3H11_433 0.55 +1.6
119,005 - Ac3H11_433 0.55 -0.8
119,005 - Ac3H11_433 0.55 +1.0
119,007 + Ac3H11_433 0.56 +1.2
119,007 + Ac3H11_433 0.56 +2.1
119,008 - Ac3H11_433 0.56 +1.8
119,008 - Ac3H11_433 0.56 -0.4
119,162 + Ac3H11_433 0.76 -0.1
119,162 + Ac3H11_433 0.76 -1.4
119,162 + Ac3H11_433 0.76 +0.3
119,163 - Ac3H11_433 0.76 +0.4
119,163 - Ac3H11_433 0.76 -0.1
119,163 - Ac3H11_433 0.76 -1.8
119,163 - Ac3H11_433 0.76 -2.6
119,163 - Ac3H11_433 0.76 -2.2
119,451 + +1.5
119,851 - Ac3H11_434 0.53 -1.7
119,851 - Ac3H11_434 0.53 +0.8
119,851 - Ac3H11_434 0.53 -1.3
119,851 - Ac3H11_434 0.53 -0.4
119,937 + Ac3H11_434 0.64 -0.0
119,937 + Ac3H11_434 0.64 +0.7
119,937 + Ac3H11_434 0.64 -0.9
119,937 + Ac3H11_434 0.64 -1.5
119,937 + Ac3H11_434 0.64 -0.0
119,937 + Ac3H11_434 0.64 +1.7
119,937 + Ac3H11_434 0.64 -2.8
119,938 - Ac3H11_434 0.64 +1.5
119,938 - Ac3H11_434 0.64 -4.1
119,938 - Ac3H11_434 0.64 -0.3
119,938 - Ac3H11_434 0.64 -3.5
119,938 - Ac3H11_434 0.64 -2.6
119,938 - Ac3H11_434 0.64 +0.4
119,938 - Ac3H11_434 0.64 -0.4
119,946 + Ac3H11_434 0.65 +0.0
119,946 + Ac3H11_434 0.65 -1.6
119,946 + Ac3H11_434 0.65 -2.5
119,946 + Ac3H11_434 0.65 +1.1
119,946 + Ac3H11_434 0.65 +1.0
119,946 + Ac3H11_434 0.65 +1.3
119,947 - Ac3H11_434 0.65 +1.8
119,947 - Ac3H11_434 0.65 +0.6
119,947 - Ac3H11_434 0.65 -0.5
119,947 - Ac3H11_434 0.65 +0.3
119,947 - Ac3H11_434 0.65 -0.0
119,947 - Ac3H11_434 0.65 -2.5
119,947 - Ac3H11_434 0.65 +0.8
119,947 - Ac3H11_434 0.65 -3.0
119,947 - Ac3H11_434 0.65 +0.9
119,947 - Ac3H11_434 0.65 +2.5
119,965 - Ac3H11_434 0.68 +0.3
119,994 + Ac3H11_434 0.71 +3.4
119,994 + Ac3H11_434 0.71 -2.4
119,994 + Ac3H11_434 0.71 +2.0
119,995 - Ac3H11_434 0.72 +0.8
119,995 - Ac3H11_434 0.72 +2.7
120,021 + Ac3H11_434 0.75 -1.0
120,021 + Ac3H11_434 0.75 +0.2
120,021 + Ac3H11_434 0.75 +1.7
120,021 + Ac3H11_434 0.75 -2.8
120,021 + Ac3H11_434 0.75 +0.3
120,021 + Ac3H11_434 0.75 +0.6
120,021 + Ac3H11_434 0.75 -2.5
120,021 + Ac3H11_434 0.75 +0.4
120,022 - Ac3H11_434 0.75 +1.2
120,022 - Ac3H11_434 0.75 +2.2
120,022 - Ac3H11_434 0.75 -2.8
120,022 - Ac3H11_434 0.75 +0.5
120,022 - Ac3H11_434 0.75 -0.2
120,180 + +0.3
120,180 + -0.5
120,181 - -1.2
120,181 - +0.5
120,181 - -2.5
120,307 + +0.6
120,307 + -1.1
120,308 - -1.7
120,308 - -0.4

Or see this region's nucleotide sequence