Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4193

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4192 and Ac3H11_4193 are separated by 682 nucleotidesAc3H11_4193 and Ac3H11_4194 are separated by 156 nucleotides Ac3H11_4192 - hypothetical protein, at 449,933 to 450,337 _4192 Ac3H11_4193 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 451,020 to 454,256 _4193 Ac3H11_4194 - DNA polymerase-like protein PA0670, at 454,413 to 455,957 _4194 Position (kb) 451 452 453 454 455Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.103 kb on + strand, within Ac3H11_4192at 450.104 kb on - strand, within Ac3H11_4192at 450.104 kb on - strand, within Ac3H11_4192at 450.104 kb on - strand, within Ac3H11_4192at 450.104 kb on - strand, within Ac3H11_4192at 450.104 kb on - strand, within Ac3H11_4192at 450.244 kb on + strand, within Ac3H11_4192at 450.339 kb on + strandat 450.339 kb on + strandat 450.339 kb on + strandat 450.339 kb on + strandat 450.339 kb on + strandat 450.339 kb on + strandat 450.340 kb on - strandat 450.340 kb on - strandat 450.340 kb on - strandat 450.340 kb on - strandat 450.340 kb on - strandat 450.340 kb on - strandat 450.361 kb on - strandat 450.441 kb on + strandat 450.441 kb on + strandat 450.442 kb on - strandat 450.442 kb on - strandat 450.455 kb on + strandat 450.455 kb on + strandat 450.455 kb on + strandat 450.455 kb on + strandat 450.456 kb on - strandat 450.456 kb on - strandat 450.456 kb on - strandat 450.456 kb on - strandat 450.456 kb on - strandat 450.456 kb on - strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.457 kb on + strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.458 kb on - strandat 450.504 kb on + strandat 450.504 kb on + strandat 450.513 kb on + strandat 450.514 kb on - strandat 450.514 kb on - strandat 450.566 kb on - strandat 450.566 kb on - strandat 450.566 kb on - strandat 450.566 kb on - strandat 450.566 kb on - strandat 450.651 kb on + strandat 450.651 kb on + strandat 450.651 kb on + strandat 450.652 kb on - strandat 450.652 kb on - strandat 450.652 kb on - strandat 450.710 kb on + strandat 450.710 kb on + strandat 450.710 kb on + strandat 450.711 kb on - strandat 450.840 kb on + strandat 450.840 kb on + strandat 450.841 kb on - strandat 450.851 kb on + strandat 450.851 kb on + strandat 450.852 kb on - strandat 450.894 kb on + strandat 450.895 kb on - strandat 451.933 kb on + strand, within Ac3H11_4193at 451.933 kb on + strand, within Ac3H11_4193at 451.933 kb on + strand, within Ac3H11_4193at 451.933 kb on + strand, within Ac3H11_4193at 452.012 kb on - strand, within Ac3H11_4193at 452.012 kb on - strand, within Ac3H11_4193at 452.363 kb on - strand, within Ac3H11_4193at 452.428 kb on + strand, within Ac3H11_4193at 452.428 kb on + strand, within Ac3H11_4193at 452.429 kb on - strand, within Ac3H11_4193at 452.429 kb on - strand, within Ac3H11_4193at 452.524 kb on + strand, within Ac3H11_4193at 452.524 kb on + strand, within Ac3H11_4193at 452.524 kb on + strand, within Ac3H11_4193at 452.525 kb on - strand, within Ac3H11_4193at 452.525 kb on - strand, within Ac3H11_4193at 452.525 kb on - strand, within Ac3H11_4193at 452.525 kb on - strand, within Ac3H11_4193at 452.996 kb on - strand, within Ac3H11_4193at 453.037 kb on + strand, within Ac3H11_4193at 453.038 kb on - strand, within Ac3H11_4193at 453.046 kb on + strand, within Ac3H11_4193at 453.052 kb on + strand, within Ac3H11_4193at 453.052 kb on + strand, within Ac3H11_4193at 453.052 kb on + strand, within Ac3H11_4193at 453.052 kb on + strand, within Ac3H11_4193at 453.052 kb on + strand, within Ac3H11_4193at 453.053 kb on - strand, within Ac3H11_4193at 453.053 kb on - strand, within Ac3H11_4193at 453.053 kb on - strand, within Ac3H11_4193at 453.053 kb on - strand, within Ac3H11_4193at 453.053 kb on - strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.187 kb on + strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.188 kb on - strand, within Ac3H11_4193at 453.250 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.280 kb on + strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.281 kb on - strand, within Ac3H11_4193at 453.448 kb on + strand, within Ac3H11_4193at 453.448 kb on + strand, within Ac3H11_4193at 453.448 kb on + strand, within Ac3H11_4193at 453.448 kb on + strand, within Ac3H11_4193at 453.449 kb on - strand, within Ac3H11_4193at 453.449 kb on - strand, within Ac3H11_4193at 453.449 kb on - strand, within Ac3H11_4193at 453.449 kb on - strand, within Ac3H11_4193at 453.449 kb on - strand, within Ac3H11_4193at 453.520 kb on + strand, within Ac3H11_4193at 453.521 kb on - strand, within Ac3H11_4193at 453.820 kb on + strand, within Ac3H11_4193at 453.820 kb on + strand, within Ac3H11_4193at 453.838 kb on - strand, within Ac3H11_4193at 453.928 kb on + strand, within Ac3H11_4193at 453.928 kb on + strand, within Ac3H11_4193at 454.228 kb on + strandat 454.266 kb on - strandat 454.537 kb on + strandat 454.537 kb on + strandat 455.090 kb on - strand, within Ac3H11_4194

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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450,103 + Ac3H11_4192 0.42 -2.9
450,103 + Ac3H11_4192 0.42 +0.8
450,103 + Ac3H11_4192 0.42 +0.2
450,103 + Ac3H11_4192 0.42 -0.4
450,103 + Ac3H11_4192 0.42 -3.1
450,103 + Ac3H11_4192 0.42 +1.0
450,103 + Ac3H11_4192 0.42 +0.9
450,104 - Ac3H11_4192 0.42 +0.1
450,104 - Ac3H11_4192 0.42 +2.0
450,104 - Ac3H11_4192 0.42 +0.2
450,104 - Ac3H11_4192 0.42 +0.7
450,104 - Ac3H11_4192 0.42 +2.0
450,244 + Ac3H11_4192 0.77 -1.0
450,339 + -2.8
450,339 + -0.3
450,339 + +2.5
450,339 + -3.1
450,339 + +0.0
450,339 + -0.9
450,340 - +0.2
450,340 - +1.3
450,340 - +1.4
450,340 - +2.3
450,340 - +1.1
450,340 - -2.4
450,361 - -0.8
450,441 + +1.2
450,441 + -0.2
450,442 - +0.9
450,442 - +0.8
450,455 + -1.0
450,455 + +0.2
450,455 + -2.2
450,455 + +1.4
450,456 - +2.2
450,456 - -0.5
450,456 - +1.0
450,456 - -2.0
450,456 - +0.5
450,456 - +0.5
450,457 + +1.7
450,457 + +0.1
450,457 + -0.2
450,457 + -1.5
450,457 + -0.2
450,457 + +2.4
450,457 + -1.2
450,458 - -0.4
450,458 - -1.1
450,458 - -1.7
450,458 - +1.1
450,458 - -0.7
450,458 - -2.9
450,458 - +2.5
450,458 - -2.6
450,458 - -1.8
450,504 + -0.9
450,504 + -4.0
450,513 + -2.0
450,514 - -0.0
450,514 - -1.7
450,566 - +0.6
450,566 - +2.4
450,566 - +0.5
450,566 - +1.4
450,566 - +1.2
450,651 + -1.7
450,651 + +0.6
450,651 + +0.7
450,652 - +0.8
450,652 - -1.8
450,652 - +1.5
450,710 + +3.6
450,710 + +0.3
450,710 + +0.4
450,711 - +1.5
450,840 + -2.6
450,840 + +1.5
450,841 - -0.7
450,851 + -1.9
450,851 + -0.9
450,852 - -3.1
450,894 + +0.4
450,895 - -0.4
451,933 + Ac3H11_4193 0.28 -2.5
451,933 + Ac3H11_4193 0.28 -1.5
451,933 + Ac3H11_4193 0.28 -2.0
451,933 + Ac3H11_4193 0.28 -4.2
452,012 - Ac3H11_4193 0.31 -1.4
452,012 - Ac3H11_4193 0.31 -1.0
452,363 - Ac3H11_4193 0.41 +0.8
452,428 + Ac3H11_4193 0.43 -2.1
452,428 + Ac3H11_4193 0.43 -0.1
452,429 - Ac3H11_4193 0.44 -2.9
452,429 - Ac3H11_4193 0.44 -2.6
452,524 + Ac3H11_4193 0.46 -0.7
452,524 + Ac3H11_4193 0.46 -3.7
452,524 + Ac3H11_4193 0.46 -3.4
452,525 - Ac3H11_4193 0.46 -2.2
452,525 - Ac3H11_4193 0.46 -1.9
452,525 - Ac3H11_4193 0.46 -3.5
452,525 - Ac3H11_4193 0.46 -1.9
452,996 - Ac3H11_4193 0.61 -2.7
453,037 + Ac3H11_4193 0.62 -1.4
453,038 - Ac3H11_4193 0.62 -3.2
453,046 + Ac3H11_4193 0.63 -1.0
453,052 + Ac3H11_4193 0.63 -3.9
453,052 + Ac3H11_4193 0.63 -2.2
453,052 + Ac3H11_4193 0.63 -3.8
453,052 + Ac3H11_4193 0.63 -3.2
453,052 + Ac3H11_4193 0.63 -2.6
453,053 - Ac3H11_4193 0.63 -1.8
453,053 - Ac3H11_4193 0.63 -3.1
453,053 - Ac3H11_4193 0.63 -4.2
453,053 - Ac3H11_4193 0.63 -2.7
453,053 - Ac3H11_4193 0.63 -3.5
453,187 + Ac3H11_4193 0.67 -3.4
453,187 + Ac3H11_4193 0.67 -1.6
453,187 + Ac3H11_4193 0.67 -2.4
453,187 + Ac3H11_4193 0.67 -3.1
453,187 + Ac3H11_4193 0.67 -3.0
453,187 + Ac3H11_4193 0.67 -2.3
453,187 + Ac3H11_4193 0.67 -4.6
453,187 + Ac3H11_4193 0.67 -3.9
453,188 - Ac3H11_4193 0.67 -2.9
453,188 - Ac3H11_4193 0.67 -2.5
453,188 - Ac3H11_4193 0.67 -3.6
453,188 - Ac3H11_4193 0.67 -1.3
453,188 - Ac3H11_4193 0.67 -2.5
453,188 - Ac3H11_4193 0.67 +1.2
453,188 - Ac3H11_4193 0.67 -0.8
453,188 - Ac3H11_4193 0.67 -3.3
453,250 + Ac3H11_4193 0.69 -2.9
453,280 + Ac3H11_4193 0.70 -3.7
453,280 + Ac3H11_4193 0.70 -2.1
453,280 + Ac3H11_4193 0.70 -3.1
453,280 + Ac3H11_4193 0.70 -4.5
453,280 + Ac3H11_4193 0.70 -3.8
453,280 + Ac3H11_4193 0.70 -3.0
453,280 + Ac3H11_4193 0.70 -2.8
453,281 - Ac3H11_4193 0.70 -2.9
453,281 - Ac3H11_4193 0.70 -3.3
453,281 - Ac3H11_4193 0.70 -3.9
453,281 - Ac3H11_4193 0.70 -3.6
453,281 - Ac3H11_4193 0.70 -2.7
453,281 - Ac3H11_4193 0.70 -2.1
453,281 - Ac3H11_4193 0.70 -0.6
453,281 - Ac3H11_4193 0.70 -2.0
453,281 - Ac3H11_4193 0.70 -1.2
453,281 - Ac3H11_4193 0.70 -1.9
453,281 - Ac3H11_4193 0.70 -3.7
453,448 + Ac3H11_4193 0.75 -2.7
453,448 + Ac3H11_4193 0.75 -3.6
453,448 + Ac3H11_4193 0.75 -3.1
453,448 + Ac3H11_4193 0.75 -2.2
453,449 - Ac3H11_4193 0.75 -2.0
453,449 - Ac3H11_4193 0.75 -2.8
453,449 - Ac3H11_4193 0.75 -2.2
453,449 - Ac3H11_4193 0.75 -0.4
453,449 - Ac3H11_4193 0.75 +0.6
453,520 + Ac3H11_4193 0.77 -2.7
453,521 - Ac3H11_4193 0.77 -2.9
453,820 + Ac3H11_4193 0.86 -3.3
453,820 + Ac3H11_4193 0.86 -2.1
453,838 - Ac3H11_4193 0.87 -1.5
453,928 + Ac3H11_4193 0.90 -1.7
453,928 + Ac3H11_4193 0.90 +1.6
454,228 + -2.7
454,266 - +2.6
454,537 + -1.0
454,537 + -2.2
455,090 - Ac3H11_4194 0.44 -3.8

Or see this region's nucleotide sequence