Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4175 and Ac3H11_4176 are separated by 60 nucleotides Ac3H11_4176 and Ac3H11_4177 are separated by 127 nucleotides Ac3H11_4177 and Ac3H11_4178 are separated by 123 nucleotides
Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675
_4175
Ac3H11_4176 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 431,736 to 432,758
_4176
Ac3H11_4177 - Transcriptional regulator, GntR family, at 432,886 to 433,500
_4177
Ac3H11_4178 - Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain), at 433,624 to 435,042
_4178
Position (kb) 431
432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 430.794 kb on + strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.828 kb on - strand, within Ac3H11_4175 at 430.878 kb on + strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.990 kb on - strand, within Ac3H11_4175 at 431.163 kb on + strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.284 kb on - strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.674 kb on - strand at 431.674 kb on - strand at 431.674 kb on - strand at 432.100 kb on - strand, within Ac3H11_4176 at 432.170 kb on - strand, within Ac3H11_4176 at 432.304 kb on - strand, within Ac3H11_4176 at 432.316 kb on - strand, within Ac3H11_4176 at 432.782 kb on - strand at 432.782 kb on - strand at 432.782 kb on - strand at 432.892 kb on + strand at 432.892 kb on + strand at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.234 kb on + strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.235 kb on - strand, within Ac3H11_4177 at 433.342 kb on + strand, within Ac3H11_4177 at 433.343 kb on - strand, within Ac3H11_4177 at 433.343 kb on - strand, within Ac3H11_4177 at 433.348 kb on + strand, within Ac3H11_4177 at 433.349 kb on - strand, within Ac3H11_4177 at 433.349 kb on - strand, within Ac3H11_4177
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 430,794 + Ac3H11_4175 0.30 +2.6 430,794 + Ac3H11_4175 0.30 -2.0 430,827 + Ac3H11_4175 0.33 -3.0 430,827 + Ac3H11_4175 0.33 +0.6 430,828 - Ac3H11_4175 0.33 +2.1 430,878 + Ac3H11_4175 0.37 +0.0 430,879 - Ac3H11_4175 0.37 +0.6 430,879 - Ac3H11_4175 0.37 +0.0 430,879 - Ac3H11_4175 0.37 -3.7 430,989 + Ac3H11_4175 0.46 +1.2 430,989 + Ac3H11_4175 0.46 +1.2 430,990 - Ac3H11_4175 0.46 -0.7 431,163 + Ac3H11_4175 0.59 +0.4 431,164 - Ac3H11_4175 0.60 +0.5 431,164 - Ac3H11_4175 0.60 +2.1 431,224 - Ac3H11_4175 0.64 +1.3 431,224 - Ac3H11_4175 0.64 +0.7 431,224 - Ac3H11_4175 0.64 +0.6 431,284 - Ac3H11_4175 0.69 -1.9 431,454 + Ac3H11_4175 0.82 -0.6 431,454 + Ac3H11_4175 0.82 +0.6 431,454 + Ac3H11_4175 0.82 +0.6 431,455 - Ac3H11_4175 0.83 +0.0 431,455 - Ac3H11_4175 0.83 +2.0 431,455 - Ac3H11_4175 0.83 -0.3 431,674 - -2.5 431,674 - -3.6 431,674 - -2.1 432,100 - Ac3H11_4176 0.36 -0.4 432,170 - Ac3H11_4176 0.42 +1.0 432,304 - Ac3H11_4176 0.56 -3.2 432,316 - Ac3H11_4176 0.57 +0.9 432,782 - +0.6 432,782 - -3.9 432,782 - -1.5 432,892 + -1.2 432,892 + -3.1 433,234 + Ac3H11_4177 0.57 -2.2 433,234 + Ac3H11_4177 0.57 -0.9 433,234 + Ac3H11_4177 0.57 +1.6 433,234 + Ac3H11_4177 0.57 -2.5 433,234 + Ac3H11_4177 0.57 +2.1 433,234 + Ac3H11_4177 0.57 +0.3 433,234 + Ac3H11_4177 0.57 +1.3 433,235 - Ac3H11_4177 0.57 -0.2 433,235 - Ac3H11_4177 0.57 -2.4 433,235 - Ac3H11_4177 0.57 -2.9 433,235 - Ac3H11_4177 0.57 -2.9 433,342 + Ac3H11_4177 0.74 -1.7 433,343 - Ac3H11_4177 0.74 -0.3 433,343 - Ac3H11_4177 0.74 +1.2 433,348 + Ac3H11_4177 0.75 +0.2 433,349 - Ac3H11_4177 0.75 -1.7 433,349 - Ac3H11_4177 0.75 -3.0
Or see this region's nucleotide sequence