Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3696

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3695 and Ac3H11_3696 are separated by 92 nucleotidesAc3H11_3696 and Ac3H11_3697 are separated by 193 nucleotides Ac3H11_3695 - Two-component response regulator, at 53,110 to 54,198 _3695 Ac3H11_3696 - FIG01198930: hypothetical protein, at 54,291 to 54,977 _3696 Ac3H11_3697 - Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization # coupled to 3.5.2.14 or similar function, at 55,171 to 56,355 _3697 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 53.497 kb on + strand, within Ac3H11_3695at 53.497 kb on + strand, within Ac3H11_3695at 53.497 kb on + strand, within Ac3H11_3695at 53.498 kb on - strand, within Ac3H11_3695at 53.498 kb on - strand, within Ac3H11_3695at 53.626 kb on + strand, within Ac3H11_3695at 53.717 kb on + strand, within Ac3H11_3695at 54.019 kb on + strand, within Ac3H11_3695at 54.019 kb on + strand, within Ac3H11_3695at 54.019 kb on + strand, within Ac3H11_3695at 54.020 kb on - strand, within Ac3H11_3695at 54.239 kb on + strandat 54.261 kb on - strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.292 kb on + strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.293 kb on - strandat 54.424 kb on + strand, within Ac3H11_3696at 54.425 kb on - strand, within Ac3H11_3696at 54.466 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.490 kb on + strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.491 kb on - strand, within Ac3H11_3696at 54.534 kb on + strand, within Ac3H11_3696at 54.685 kb on + strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.686 kb on - strand, within Ac3H11_3696at 54.730 kb on + strand, within Ac3H11_3696at 54.730 kb on + strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.731 kb on - strand, within Ac3H11_3696at 54.740 kb on - strand, within Ac3H11_3696at 54.740 kb on - strand, within Ac3H11_3696at 54.868 kb on + strand, within Ac3H11_3696at 54.869 kb on - strand, within Ac3H11_3696at 55.023 kb on - strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.183 kb on + strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.184 kb on - strandat 55.190 kb on - strandat 55.190 kb on - strandat 55.303 kb on + strand, within Ac3H11_3697at 55.304 kb on - strand, within Ac3H11_3697at 55.331 kb on - strand, within Ac3H11_3697at 55.816 kb on + strand, within Ac3H11_3697at 55.816 kb on + strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.817 kb on - strand, within Ac3H11_3697at 55.957 kb on + strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.958 kb on - strand, within Ac3H11_3697at 55.960 kb on - strand, within Ac3H11_3697at 55.960 kb on - strand, within Ac3H11_3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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53,497 + Ac3H11_3695 0.36 -1.5
53,497 + Ac3H11_3695 0.36 -2.5
53,497 + Ac3H11_3695 0.36 +1.6
53,498 - Ac3H11_3695 0.36 +1.8
53,498 - Ac3H11_3695 0.36 +0.7
53,626 + Ac3H11_3695 0.47 +0.7
53,717 + Ac3H11_3695 0.56 +1.3
54,019 + Ac3H11_3695 0.83 +1.3
54,019 + Ac3H11_3695 0.83 +0.9
54,019 + Ac3H11_3695 0.83 +1.9
54,020 - Ac3H11_3695 0.84 +1.9
54,239 + -1.2
54,261 - -2.2
54,292 + -1.4
54,292 + -0.3
54,292 + -0.1
54,292 + +0.5
54,292 + -1.9
54,292 + -2.7
54,292 + +0.9
54,292 + -2.2
54,293 - -1.5
54,293 - +0.5
54,293 - +0.6
54,293 - -0.7
54,293 - -2.2
54,293 - +1.7
54,424 + Ac3H11_3696 0.19 +1.4
54,425 - Ac3H11_3696 0.20 +0.7
54,466 + Ac3H11_3696 0.25 -2.5
54,490 + Ac3H11_3696 0.29 -0.7
54,490 + Ac3H11_3696 0.29 -2.8
54,490 + Ac3H11_3696 0.29 +1.6
54,490 + Ac3H11_3696 0.29 -1.4
54,490 + Ac3H11_3696 0.29 +1.1
54,491 - Ac3H11_3696 0.29 +2.4
54,491 - Ac3H11_3696 0.29 -1.7
54,491 - Ac3H11_3696 0.29 -0.7
54,491 - Ac3H11_3696 0.29 +0.1
54,491 - Ac3H11_3696 0.29 +2.7
54,534 + Ac3H11_3696 0.35 +2.3
54,685 + Ac3H11_3696 0.57 -0.3
54,686 - Ac3H11_3696 0.57 -0.7
54,686 - Ac3H11_3696 0.57 +0.5
54,686 - Ac3H11_3696 0.57 +0.6
54,686 - Ac3H11_3696 0.57 +0.3
54,686 - Ac3H11_3696 0.57 -1.4
54,730 + Ac3H11_3696 0.64 +2.2
54,730 + Ac3H11_3696 0.64 -0.3
54,731 - Ac3H11_3696 0.64 +1.3
54,731 - Ac3H11_3696 0.64 -1.7
54,731 - Ac3H11_3696 0.64 -2.8
54,731 - Ac3H11_3696 0.64 +2.6
54,740 - Ac3H11_3696 0.65 -0.8
54,740 - Ac3H11_3696 0.65 -3.3
54,868 + Ac3H11_3696 0.84 +1.7
54,869 - Ac3H11_3696 0.84 -1.4
55,023 - +1.0
55,183 + -0.5
55,183 + -0.5
55,183 + -1.5
55,183 + -0.4
55,184 - +1.0
55,184 - +2.9
55,184 - +0.5
55,184 - +1.7
55,184 - +0.6
55,190 - -3.1
55,190 - +1.2
55,303 + Ac3H11_3697 0.11 -0.9
55,304 - Ac3H11_3697 0.11 -1.5
55,331 - Ac3H11_3697 0.14 +0.9
55,816 + Ac3H11_3697 0.54 +1.6
55,816 + Ac3H11_3697 0.54 +1.4
55,817 - Ac3H11_3697 0.55 -2.6
55,817 - Ac3H11_3697 0.55 -2.3
55,817 - Ac3H11_3697 0.55 -0.4
55,957 + Ac3H11_3697 0.66 -2.3
55,958 - Ac3H11_3697 0.66 +0.7
55,958 - Ac3H11_3697 0.66 -1.2
55,958 - Ac3H11_3697 0.66 -0.4
55,960 - Ac3H11_3697 0.67 -0.6
55,960 - Ac3H11_3697 0.67 -1.6

Or see this region's nucleotide sequence