Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3626 and Ac3H11_3627 are separated by 25 nucleotides Ac3H11_3627 and Ac3H11_3628 are separated by 45 nucleotides Ac3H11_3628 and Ac3H11_3629 are separated by 46 nucleotides Ac3H11_3629 and Ac3H11_3630 are separated by 230 nucleotides
Ac3H11_3626 - Probable lipoprotein signal peptide, at 183,201 to 184,250
_3626
Ac3H11_3627 - putative transmembrane protein, at 184,276 to 184,569
_3627
Ac3H11_3628 - putative transmembrane protein, at 184,615 to 185,196
_3628
Ac3H11_3629 - membrane protein, putative, at 185,243 to 185,653
_3629
Ac3H11_3630 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 185,884 to 186,768
_3630
Position (kb) 185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 184.493 kb on + strand, within Ac3H11_3627 at 184.494 kb on - strand, within Ac3H11_3627 at 184.724 kb on + strand, within Ac3H11_3628 at 184.724 kb on + strand, within Ac3H11_3628 at 184.725 kb on - strand, within Ac3H11_3628 at 184.802 kb on + strand, within Ac3H11_3628 at 184.803 kb on - strand, within Ac3H11_3628 at 184.803 kb on - strand, within Ac3H11_3628 at 184.859 kb on + strand, within Ac3H11_3628 at 184.859 kb on + strand, within Ac3H11_3628 at 184.860 kb on - strand, within Ac3H11_3628 at 184.860 kb on - strand, within Ac3H11_3628 at 184.860 kb on - strand, within Ac3H11_3628 at 184.860 kb on - strand, within Ac3H11_3628 at 184.860 kb on - strand, within Ac3H11_3628 at 184.884 kb on - strand, within Ac3H11_3628 at 185.012 kb on + strand, within Ac3H11_3628 at 185.012 kb on + strand at 185.013 kb on - strand, within Ac3H11_3628 at 185.132 kb on + strand, within Ac3H11_3628 at 185.240 kb on + strand at 185.241 kb on - strand at 185.241 kb on - strand at 185.334 kb on + strand, within Ac3H11_3629 at 185.335 kb on - strand, within Ac3H11_3629 at 185.335 kb on - strand, within Ac3H11_3629 at 185.894 kb on + strand at 185.894 kb on + strand at 185.894 kb on + strand at 185.894 kb on + strand at 185.895 kb on - strand at 185.895 kb on - strand at 186.070 kb on + strand, within Ac3H11_3630 at 186.321 kb on + strand, within Ac3H11_3630 at 186.369 kb on - strand, within Ac3H11_3630 at 186.376 kb on - strand, within Ac3H11_3630 at 186.410 kb on + strand, within Ac3H11_3630 at 186.411 kb on - strand, within Ac3H11_3630 at 186.550 kb on + strand, within Ac3H11_3630 at 186.559 kb on + strand, within Ac3H11_3630
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 184,493 + Ac3H11_3627 0.74 -2.3 184,494 - Ac3H11_3627 0.74 +1.3 184,724 + Ac3H11_3628 0.19 +0.4 184,724 + Ac3H11_3628 0.19 +2.6 184,725 - Ac3H11_3628 0.19 +0.9 184,802 + Ac3H11_3628 0.32 -3.3 184,803 - Ac3H11_3628 0.32 +0.3 184,803 - Ac3H11_3628 0.32 -3.2 184,859 + Ac3H11_3628 0.42 -3.4 184,859 + Ac3H11_3628 0.42 +1.7 184,860 - Ac3H11_3628 0.42 -2.7 184,860 - Ac3H11_3628 0.42 +1.0 184,860 - Ac3H11_3628 0.42 +1.0 184,860 - Ac3H11_3628 0.42 -0.6 184,860 - Ac3H11_3628 0.42 +1.4 184,884 - Ac3H11_3628 0.46 -1.3 185,012 + Ac3H11_3628 0.68 +0.2 185,012 + +1.6 185,013 - Ac3H11_3628 0.68 +0.5 185,132 + Ac3H11_3628 0.89 +2.1 185,240 + +4.0 185,241 - -1.7 185,241 - -0.7 185,334 + Ac3H11_3629 0.22 +1.3 185,335 - Ac3H11_3629 0.22 +0.3 185,335 - Ac3H11_3629 0.22 +0.2 185,894 + -2.2 185,894 + -1.9 185,894 + -3.7 185,894 + -0.4 185,895 - -1.4 185,895 - +0.6 186,070 + Ac3H11_3630 0.21 -1.4 186,321 + Ac3H11_3630 0.49 -2.6 186,369 - Ac3H11_3630 0.55 -2.4 186,376 - Ac3H11_3630 0.56 -2.0 186,410 + Ac3H11_3630 0.59 -2.0 186,411 - Ac3H11_3630 0.60 -2.2 186,550 + Ac3H11_3630 0.75 -2.2 186,559 + Ac3H11_3630 0.76 +0.0
Or see this region's nucleotide sequence