Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3510 and Ac3H11_3511 are separated by 80 nucleotides Ac3H11_3511 and Ac3H11_3512 are separated by 40 nucleotides Ac3H11_3512 and Ac3H11_3513 are separated by 345 nucleotides
Ac3H11_3510 - Site-specific DNA methylase, at 57,633 to 58,421
_3510
Ac3H11_3511 - FIG01198229: hypothetical protein, at 58,502 to 59,047
_3511
Ac3H11_3512 - Chromosome 3 SCAF14978, whole genome shotgun sequence, at 59,088 to 59,630
_3512
Ac3H11_3513 - Chemotaxis protein CheV (EC 2.7.3.-), at 59,976 to 60,935
_3513
Position (kb) 58
59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 57.524 kb on + strand at 57.524 kb on + strand at 57.524 kb on + strand at 57.524 kb on + strand at 57.524 kb on + strand at 57.525 kb on - strand at 57.525 kb on - strand at 57.525 kb on - strand at 57.525 kb on - strand at 57.525 kb on - strand at 57.619 kb on - strand at 57.707 kb on + strand at 57.707 kb on + strand at 57.707 kb on + strand at 57.708 kb on - strand at 57.708 kb on - strand at 57.708 kb on - strand at 57.714 kb on + strand, within Ac3H11_3510 at 57.715 kb on - strand, within Ac3H11_3510 at 57.715 kb on - strand, within Ac3H11_3510 at 57.813 kb on + strand, within Ac3H11_3510 at 57.951 kb on + strand, within Ac3H11_3510 at 57.951 kb on + strand, within Ac3H11_3510 at 57.951 kb on + strand, within Ac3H11_3510 at 57.952 kb on - strand, within Ac3H11_3510 at 58.086 kb on + strand, within Ac3H11_3510 at 58.086 kb on + strand, within Ac3H11_3510 at 58.087 kb on - strand, within Ac3H11_3510 at 58.087 kb on - strand, within Ac3H11_3510 at 58.087 kb on - strand, within Ac3H11_3510 at 58.087 kb on - strand, within Ac3H11_3510 at 58.087 kb on - strand, within Ac3H11_3510 at 58.149 kb on + strand, within Ac3H11_3510 at 58.150 kb on - strand, within Ac3H11_3510 at 58.150 kb on - strand, within Ac3H11_3510 at 58.165 kb on - strand, within Ac3H11_3510 at 58.182 kb on + strand, within Ac3H11_3510 at 58.183 kb on - strand, within Ac3H11_3510 at 58.210 kb on - strand, within Ac3H11_3510 at 58.210 kb on - strand, within Ac3H11_3510 at 58.262 kb on + strand, within Ac3H11_3510 at 58.263 kb on - strand, within Ac3H11_3510 at 58.263 kb on - strand, within Ac3H11_3510 at 58.303 kb on - strand, within Ac3H11_3510 at 58.329 kb on + strand, within Ac3H11_3510 at 58.329 kb on + strand, within Ac3H11_3510 at 58.329 kb on + strand, within Ac3H11_3510 at 58.329 kb on + strand, within Ac3H11_3510 at 58.329 kb on + strand, within Ac3H11_3510 at 58.330 kb on - strand, within Ac3H11_3510 at 58.330 kb on - strand, within Ac3H11_3510 at 58.330 kb on - strand, within Ac3H11_3510 at 58.380 kb on + strand at 58.380 kb on + strand at 58.381 kb on - strand at 58.469 kb on - strand at 58.485 kb on - strand at 58.485 kb on - strand at 58.508 kb on - strand at 58.572 kb on + strand, within Ac3H11_3511 at 58.573 kb on - strand, within Ac3H11_3511 at 58.642 kb on - strand, within Ac3H11_3511 at 58.716 kb on + strand, within Ac3H11_3511 at 58.716 kb on + strand, within Ac3H11_3511 at 58.717 kb on - strand, within Ac3H11_3511 at 58.717 kb on - strand, within Ac3H11_3511 at 58.923 kb on + strand, within Ac3H11_3511 at 59.149 kb on + strand, within Ac3H11_3512 at 59.149 kb on + strand, within Ac3H11_3512 at 59.149 kb on + strand, within Ac3H11_3512 at 59.150 kb on - strand, within Ac3H11_3512 at 59.150 kb on - strand, within Ac3H11_3512 at 59.408 kb on - strand, within Ac3H11_3512 at 59.408 kb on - strand, within Ac3H11_3512 at 59.411 kb on - strand, within Ac3H11_3512 at 59.438 kb on - strand, within Ac3H11_3512 at 59.459 kb on - strand, within Ac3H11_3512 at 59.476 kb on + strand, within Ac3H11_3512 at 59.476 kb on + strand, within Ac3H11_3512 at 59.476 kb on + strand, within Ac3H11_3512 at 59.477 kb on - strand, within Ac3H11_3512 at 59.477 kb on - strand, within Ac3H11_3512 at 59.477 kb on - strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.497 kb on + strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.498 kb on - strand, within Ac3H11_3512 at 59.503 kb on + strand, within Ac3H11_3512 at 59.504 kb on - strand, within Ac3H11_3512 at 59.504 kb on - strand, within Ac3H11_3512 at 59.504 kb on - strand, within Ac3H11_3512 at 59.504 kb on - strand, within Ac3H11_3512 at 59.504 kb on - strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.518 kb on + strand, within Ac3H11_3512 at 59.542 kb on + strand, within Ac3H11_3512 at 59.542 kb on + strand, within Ac3H11_3512 at 59.542 kb on + strand, within Ac3H11_3512 at 59.542 kb on + strand, within Ac3H11_3512 at 59.542 kb on + strand, within Ac3H11_3512 at 59.543 kb on - strand, within Ac3H11_3512 at 59.543 kb on - strand, within Ac3H11_3512 at 59.545 kb on + strand, within Ac3H11_3512 at 59.623 kb on + strand at 59.623 kb on + strand at 59.623 kb on + strand at 59.623 kb on + strand at 59.624 kb on - strand at 59.624 kb on - strand at 59.624 kb on - strand at 59.624 kb on - strand at 59.624 kb on - strand at 59.709 kb on - strand at 59.748 kb on + strand at 59.748 kb on + strand at 59.749 kb on - strand at 59.846 kb on - strand at 59.862 kb on - strand at 59.862 kb on - strand at 59.977 kb on + strand at 59.977 kb on + strand at 59.977 kb on + strand at 59.977 kb on + strand at 59.977 kb on + strand at 59.978 kb on - strand at 59.978 kb on - strand at 59.978 kb on - strand at 59.978 kb on - strand at 60.037 kb on + strand at 60.037 kb on + strand at 60.038 kb on - strand at 60.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 57,524 + +0.3 57,524 + +1.0 57,524 + +0.7 57,524 + -2.0 57,524 + +0.3 57,525 - +0.3 57,525 - -0.5 57,525 - +0.8 57,525 - +1.8 57,525 - -2.5 57,619 - +0.6 57,707 + +0.9 57,707 + -0.1 57,707 + -2.1 57,708 - +0.8 57,708 - +0.0 57,708 - +0.4 57,714 + Ac3H11_3510 0.10 +1.9 57,715 - Ac3H11_3510 0.10 -1.7 57,715 - Ac3H11_3510 0.10 +0.0 57,813 + Ac3H11_3510 0.23 -2.9 57,951 + Ac3H11_3510 0.40 +1.4 57,951 + Ac3H11_3510 0.40 -0.8 57,951 + Ac3H11_3510 0.40 -0.7 57,952 - Ac3H11_3510 0.40 +2.3 58,086 + Ac3H11_3510 0.57 -0.0 58,086 + Ac3H11_3510 0.57 +1.9 58,087 - Ac3H11_3510 0.58 +1.7 58,087 - Ac3H11_3510 0.58 +1.4 58,087 - Ac3H11_3510 0.58 -1.0 58,087 - Ac3H11_3510 0.58 +0.5 58,087 - Ac3H11_3510 0.58 +2.3 58,149 + Ac3H11_3510 0.65 -1.3 58,150 - Ac3H11_3510 0.66 +1.9 58,150 - Ac3H11_3510 0.66 -3.5 58,165 - Ac3H11_3510 0.67 +0.6 58,182 + Ac3H11_3510 0.70 +0.1 58,183 - Ac3H11_3510 0.70 -1.4 58,210 - Ac3H11_3510 0.73 -2.5 58,210 - Ac3H11_3510 0.73 +0.5 58,262 + Ac3H11_3510 0.80 +0.6 58,263 - Ac3H11_3510 0.80 +0.2 58,263 - Ac3H11_3510 0.80 +2.6 58,303 - Ac3H11_3510 0.85 -4.2 58,329 + Ac3H11_3510 0.88 +0.6 58,329 + Ac3H11_3510 0.88 -0.7 58,329 + Ac3H11_3510 0.88 +2.6 58,329 + Ac3H11_3510 0.88 -3.0 58,329 + Ac3H11_3510 0.88 +0.1 58,330 - Ac3H11_3510 0.88 -1.9 58,330 - Ac3H11_3510 0.88 -0.9 58,330 - Ac3H11_3510 0.88 +2.8 58,380 + +1.6 58,380 + +0.0 58,381 - -1.2 58,469 - -0.2 58,485 - +1.8 58,485 - +0.9 58,508 - -1.9 58,572 + Ac3H11_3511 0.13 +2.2 58,573 - Ac3H11_3511 0.13 +1.5 58,642 - Ac3H11_3511 0.26 -1.9 58,716 + Ac3H11_3511 0.39 +0.5 58,716 + Ac3H11_3511 0.39 -1.6 58,717 - Ac3H11_3511 0.39 -0.3 58,717 - Ac3H11_3511 0.39 +0.3 58,923 + Ac3H11_3511 0.77 +1.9 59,149 + Ac3H11_3512 0.11 -0.1 59,149 + Ac3H11_3512 0.11 -0.9 59,149 + Ac3H11_3512 0.11 +1.3 59,150 - Ac3H11_3512 0.11 +1.9 59,150 - Ac3H11_3512 0.11 -1.8 59,408 - Ac3H11_3512 0.59 -3.5 59,408 - Ac3H11_3512 0.59 +2.2 59,411 - Ac3H11_3512 0.59 -2.9 59,438 - Ac3H11_3512 0.64 -4.1 59,459 - Ac3H11_3512 0.68 +0.6 59,476 + Ac3H11_3512 0.71 +0.8 59,476 + Ac3H11_3512 0.71 +3.0 59,476 + Ac3H11_3512 0.71 -1.3 59,477 - Ac3H11_3512 0.72 +1.4 59,477 - Ac3H11_3512 0.72 +1.0 59,477 - Ac3H11_3512 0.72 +0.7 59,497 + Ac3H11_3512 0.75 +2.1 59,497 + Ac3H11_3512 0.75 -3.2 59,497 + Ac3H11_3512 0.75 -0.8 59,497 + Ac3H11_3512 0.75 -2.6 59,497 + Ac3H11_3512 0.75 -2.6 59,497 + Ac3H11_3512 0.75 +1.4 59,498 - Ac3H11_3512 0.76 +0.3 59,498 - Ac3H11_3512 0.76 +1.0 59,498 - Ac3H11_3512 0.76 +1.0 59,498 - Ac3H11_3512 0.76 +0.6 59,498 - Ac3H11_3512 0.76 +0.2 59,498 - Ac3H11_3512 0.76 -0.1 59,503 + Ac3H11_3512 0.76 +0.2 59,504 - Ac3H11_3512 0.77 +0.2 59,504 - Ac3H11_3512 0.77 -2.7 59,504 - Ac3H11_3512 0.77 -3.5 59,504 - Ac3H11_3512 0.77 -1.0 59,504 - Ac3H11_3512 0.77 +0.2 59,518 + Ac3H11_3512 0.79 +0.4 59,518 + Ac3H11_3512 0.79 +0.7 59,518 + Ac3H11_3512 0.79 -1.3 59,518 + Ac3H11_3512 0.79 -0.8 59,518 + Ac3H11_3512 0.79 -0.0 59,518 + Ac3H11_3512 0.79 +0.6 59,542 + Ac3H11_3512 0.84 -2.7 59,542 + Ac3H11_3512 0.84 -2.1 59,542 + Ac3H11_3512 0.84 -3.0 59,542 + Ac3H11_3512 0.84 -1.9 59,542 + Ac3H11_3512 0.84 -0.7 59,543 - Ac3H11_3512 0.84 +3.3 59,543 - Ac3H11_3512 0.84 +0.1 59,545 + Ac3H11_3512 0.84 -0.7 59,623 + +0.1 59,623 + +2.1 59,623 + +0.6 59,623 + +0.6 59,624 - +0.1 59,624 - +2.9 59,624 - +3.1 59,624 - +0.9 59,624 - +0.7 59,709 - -2.4 59,748 + +1.1 59,748 + +0.6 59,749 - +0.6 59,846 - +3.4 59,862 - -1.2 59,862 - -3.4 59,977 + +0.7 59,977 + -3.8 59,977 + -0.1 59,977 + -2.1 59,977 + +0.9 59,978 - +0.7 59,978 - +0.6 59,978 - -0.1 59,978 - -0.7 60,037 + +1.0 60,037 + -0.6 60,038 - -3.1 60,038 - -1.8
Or see this region's nucleotide sequence