Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_348

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_347 and Ac3H11_348 are separated by 28 nucleotidesAc3H11_348 and Ac3H11_349 overlap by 1 nucleotidesAc3H11_349 and Ac3H11_350 are separated by 59 nucleotidesAc3H11_350 and Ac3H11_351 are separated by 34 nucleotidesAc3H11_351 and Ac3H11_352 are separated by 3 nucleotidesAc3H11_352 and Ac3H11_353 are separated by 13 nucleotides Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197 _347 Ac3H11_348 - hypothetical protein, at 24,226 to 24,549 _348 Ac3H11_349 - hypothetical protein, at 24,549 to 24,758 _349 Ac3H11_350 - hypothetical protein, at 24,818 to 25,024 _350 Ac3H11_351 - hypothetical protein, at 25,059 to 25,223 _351 Ac3H11_352 - hypothetical protein, at 25,227 to 25,445 _352 Ac3H11_353 - PE-PGRS FAMILY PROTEIN, at 25,459 to 27,096 _353 Position (kb) 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.315 kb on - strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347at 23.463 kb on + strand, within Ac3H11_347at 23.463 kb on + strand, within Ac3H11_347at 23.503 kb on - strand, within Ac3H11_347at 23.613 kb on + strand, within Ac3H11_347at 23.739 kb on + strand, within Ac3H11_347at 23.739 kb on + strand, within Ac3H11_347at 23.740 kb on - strandat 23.827 kb on + strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.983 kb on + strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 24.127 kb on + strandat 24.165 kb on - strandat 24.195 kb on + strandat 24.195 kb on + strandat 24.196 kb on - strandat 24.196 kb on - strandat 24.278 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.555 kb on + strandat 24.556 kb on - strandat 24.601 kb on - strand, within Ac3H11_349at 24.601 kb on - strand, within Ac3H11_349at 24.791 kb on - strandat 24.800 kb on + strandat 24.800 kb on + strandat 24.801 kb on - strandat 24.801 kb on - strandat 25.188 kb on - strandat 25.188 kb on - strand, within Ac3H11_351at 25.443 kb on + strandat 25.536 kb on + strandat 25.536 kb on + strandat 25.536 kb on + strandat 25.536 kb on + strandat 25.537 kb on - strandat 25.537 kb on - strandat 25.537 kb on - strandat 25.537 kb on - strandat 25.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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23,314 + Ac3H11_347 0.10 -1.3
23,314 + Ac3H11_347 0.10 +1.6
23,314 + Ac3H11_347 0.10 -0.9
23,314 + Ac3H11_347 0.10 -0.9
23,314 + Ac3H11_347 0.10 -2.5
23,315 - Ac3H11_347 0.11 +0.6
23,346 + Ac3H11_347 0.14 +1.2
23,346 + Ac3H11_347 0.14 -2.4
23,463 + Ac3H11_347 0.26 +0.0
23,463 + Ac3H11_347 0.26 +0.6
23,503 - Ac3H11_347 0.30 +0.7
23,613 + Ac3H11_347 0.41 -1.4
23,739 + Ac3H11_347 0.53 -2.5
23,739 + Ac3H11_347 0.53 +1.9
23,740 - +1.4
23,827 + Ac3H11_347 0.62 +3.8
23,828 - Ac3H11_347 0.63 +0.3
23,828 - Ac3H11_347 0.63 -2.2
23,828 - Ac3H11_347 0.63 +0.0
23,842 + Ac3H11_347 0.64 +1.6
23,842 + Ac3H11_347 0.64 -2.0
23,842 + Ac3H11_347 0.64 -1.0
23,842 + Ac3H11_347 0.64 -2.2
23,842 + Ac3H11_347 0.64 -2.0
23,842 + Ac3H11_347 0.64 -1.1
23,842 + Ac3H11_347 0.64 +2.2
23,842 + Ac3H11_347 0.64 +0.9
23,842 + Ac3H11_347 0.64 -1.6
23,843 - Ac3H11_347 0.64 -0.5
23,843 - Ac3H11_347 0.64 -0.7
23,843 - Ac3H11_347 0.64 +1.2
23,843 - Ac3H11_347 0.64 -0.7
23,843 - Ac3H11_347 0.64 -0.2
23,843 - Ac3H11_347 0.64 -2.8
23,843 - Ac3H11_347 0.64 -1.1
23,843 - Ac3H11_347 0.64 -2.5
23,983 + Ac3H11_347 0.78 -1.4
23,984 - Ac3H11_347 0.78 +1.1
23,984 - Ac3H11_347 0.78 -0.2
23,984 - Ac3H11_347 0.78 -2.1
24,127 + +0.6
24,165 - -0.9
24,195 + -2.3
24,195 + -2.5
24,196 - +1.0
24,196 - -1.5
24,278 + Ac3H11_348 0.16 +0.8
24,354 + Ac3H11_348 0.40 -2.3
24,354 + Ac3H11_348 0.40 +0.2
24,354 + Ac3H11_348 0.40 -3.1
24,555 + -1.2
24,556 - -1.8
24,601 - Ac3H11_349 0.25 -0.7
24,601 - Ac3H11_349 0.25 +2.2
24,791 - -1.5
24,800 + +3.7
24,800 + +1.1
24,801 - +0.1
24,801 - -2.2
25,188 - +2.6
25,188 - Ac3H11_351 0.78 -0.3
25,443 + -0.4
25,536 + +0.2
25,536 + +1.8
25,536 + +3.6
25,536 + +2.6
25,537 - -1.4
25,537 - +0.5
25,537 - -3.5
25,537 - +0.6
25,537 - +1.1

Or see this region's nucleotide sequence