Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3025

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3024 and Ac3H11_3025 are separated by 90 nucleotidesAc3H11_3025 and Ac3H11_3026 are separated by 210 nucleotides Ac3H11_3024 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 45,771 to 46,889 _3024 Ac3H11_3025 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 46,980 to 48,098 _3025 Ac3H11_3026 - Excinuclease ABC subunit A, dimeric form, at 48,309 to 54,182 _3026 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 46.048 kb on + strand, within Ac3H11_3024at 46.048 kb on + strand, within Ac3H11_3024at 46.268 kb on + strand, within Ac3H11_3024at 46.276 kb on + strand, within Ac3H11_3024at 46.276 kb on + strand, within Ac3H11_3024at 46.277 kb on - strand, within Ac3H11_3024at 46.480 kb on + strand, within Ac3H11_3024at 46.480 kb on + strand, within Ac3H11_3024at 46.480 kb on + strand, within Ac3H11_3024at 46.480 kb on + strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.481 kb on - strand, within Ac3H11_3024at 46.736 kb on - strand, within Ac3H11_3024at 46.906 kb on + strandat 46.906 kb on + strandat 46.906 kb on + strandat 46.906 kb on + strandat 46.907 kb on - strandat 46.907 kb on - strandat 46.923 kb on + strandat 46.923 kb on + strandat 46.923 kb on + strandat 46.923 kb on + strandat 46.923 kb on + strandat 46.924 kb on - strandat 46.924 kb on - strandat 46.950 kb on + strandat 46.950 kb on + strandat 46.950 kb on + strandat 46.951 kb on - strandat 47.039 kb on + strandat 47.112 kb on + strand, within Ac3H11_3025at 47.112 kb on + strand, within Ac3H11_3025at 47.112 kb on + strand, within Ac3H11_3025at 47.112 kb on + strand, within Ac3H11_3025at 47.112 kb on + strand, within Ac3H11_3025at 47.113 kb on - strand, within Ac3H11_3025at 47.113 kb on - strand, within Ac3H11_3025at 47.257 kb on + strand, within Ac3H11_3025at 47.258 kb on - strand, within Ac3H11_3025at 47.596 kb on + strand, within Ac3H11_3025at 47.596 kb on + strand, within Ac3H11_3025at 47.596 kb on + strand, within Ac3H11_3025at 47.596 kb on + strand, within Ac3H11_3025at 47.596 kb on + strand, within Ac3H11_3025at 47.597 kb on - strand, within Ac3H11_3025at 47.597 kb on - strand, within Ac3H11_3025at 47.665 kb on + strand, within Ac3H11_3025at 47.665 kb on + strand, within Ac3H11_3025at 47.665 kb on + strand, within Ac3H11_3025at 47.665 kb on + strand, within Ac3H11_3025at 47.666 kb on - strand, within Ac3H11_3025at 47.666 kb on - strand, within Ac3H11_3025at 47.666 kb on - strand, within Ac3H11_3025at 47.666 kb on - strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.689 kb on + strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.690 kb on - strand, within Ac3H11_3025at 47.944 kb on + strand, within Ac3H11_3025at 47.944 kb on + strand, within Ac3H11_3025at 47.944 kb on + strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 47.945 kb on - strand, within Ac3H11_3025at 48.135 kb on + strandat 48.135 kb on + strandat 48.135 kb on + strandat 48.135 kb on + strandat 48.135 kb on + strandat 48.235 kb on + strandat 48.273 kb on + strandat 48.450 kb on + strandat 48.451 kb on - strandat 48.551 kb on - strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.720 kb on + strandat 48.721 kb on - strandat 48.721 kb on - strandat 48.721 kb on - strandat 48.721 kb on - strandat 49.005 kb on + strand, within Ac3H11_3026at 49.005 kb on + strand, within Ac3H11_3026

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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46,048 + Ac3H11_3024 0.25 +1.1
46,048 + Ac3H11_3024 0.25 -1.8
46,268 + Ac3H11_3024 0.44 +2.2
46,276 + Ac3H11_3024 0.45 +0.4
46,276 + Ac3H11_3024 0.45 +2.0
46,277 - Ac3H11_3024 0.45 -0.1
46,480 + Ac3H11_3024 0.63 +1.5
46,480 + Ac3H11_3024 0.63 +1.1
46,480 + Ac3H11_3024 0.63 -0.5
46,480 + Ac3H11_3024 0.63 +1.0
46,481 - Ac3H11_3024 0.63 -2.8
46,481 - Ac3H11_3024 0.63 -1.0
46,481 - Ac3H11_3024 0.63 +0.5
46,481 - Ac3H11_3024 0.63 +2.8
46,481 - Ac3H11_3024 0.63 +1.6
46,481 - Ac3H11_3024 0.63 +3.3
46,736 - Ac3H11_3024 0.86 -1.2
46,906 + +1.5
46,906 + +0.8
46,906 + +0.7
46,906 + -4.4
46,907 - -1.2
46,907 - -0.2
46,923 + -0.9
46,923 + -0.7
46,923 + -0.8
46,923 + +1.7
46,923 + +0.9
46,924 - -1.5
46,924 - -2.2
46,950 + -2.6
46,950 + -1.8
46,950 + -0.4
46,951 - +3.2
47,039 + +0.8
47,112 + Ac3H11_3025 0.12 -0.1
47,112 + Ac3H11_3025 0.12 -3.3
47,112 + Ac3H11_3025 0.12 +1.1
47,112 + Ac3H11_3025 0.12 +0.7
47,112 + Ac3H11_3025 0.12 -0.9
47,113 - Ac3H11_3025 0.12 +2.7
47,113 - Ac3H11_3025 0.12 -1.8
47,257 + Ac3H11_3025 0.25 -1.2
47,258 - Ac3H11_3025 0.25 +0.1
47,596 + Ac3H11_3025 0.55 -1.2
47,596 + Ac3H11_3025 0.55 +1.2
47,596 + Ac3H11_3025 0.55 +0.8
47,596 + Ac3H11_3025 0.55 -1.7
47,596 + Ac3H11_3025 0.55 -2.0
47,597 - Ac3H11_3025 0.55 -3.0
47,597 - Ac3H11_3025 0.55 -2.6
47,665 + Ac3H11_3025 0.61 +0.7
47,665 + Ac3H11_3025 0.61 +2.1
47,665 + Ac3H11_3025 0.61 +0.7
47,665 + Ac3H11_3025 0.61 -1.3
47,666 - Ac3H11_3025 0.61 -2.7
47,666 - Ac3H11_3025 0.61 -0.2
47,666 - Ac3H11_3025 0.61 -1.8
47,666 - Ac3H11_3025 0.61 -2.6
47,689 + Ac3H11_3025 0.63 -0.0
47,689 + Ac3H11_3025 0.63 +2.4
47,689 + Ac3H11_3025 0.63 +0.9
47,689 + Ac3H11_3025 0.63 +1.0
47,689 + Ac3H11_3025 0.63 -0.8
47,689 + Ac3H11_3025 0.63 -0.1
47,689 + Ac3H11_3025 0.63 +2.5
47,689 + Ac3H11_3025 0.63 -1.7
47,689 + Ac3H11_3025 0.63 +0.8
47,689 + Ac3H11_3025 0.63 -1.3
47,689 + Ac3H11_3025 0.63 -2.1
47,690 - Ac3H11_3025 0.63 -4.0
47,690 - Ac3H11_3025 0.63 -2.0
47,690 - Ac3H11_3025 0.63 +1.6
47,690 - Ac3H11_3025 0.63 -2.6
47,690 - Ac3H11_3025 0.63 +1.9
47,690 - Ac3H11_3025 0.63 -0.0
47,690 - Ac3H11_3025 0.63 +0.7
47,690 - Ac3H11_3025 0.63 -2.7
47,690 - Ac3H11_3025 0.63 +1.3
47,690 - Ac3H11_3025 0.63 +0.8
47,944 + Ac3H11_3025 0.86 -1.5
47,944 + Ac3H11_3025 0.86 +1.6
47,944 + Ac3H11_3025 0.86 +2.0
47,945 - Ac3H11_3025 0.86 -3.5
47,945 - Ac3H11_3025 0.86 -1.3
47,945 - Ac3H11_3025 0.86 +1.2
47,945 - Ac3H11_3025 0.86 -0.7
47,945 - Ac3H11_3025 0.86 -2.0
47,945 - Ac3H11_3025 0.86 -1.0
47,945 - Ac3H11_3025 0.86 +1.8
48,135 + +2.2
48,135 + -1.8
48,135 + -1.9
48,135 + -1.2
48,135 + -0.1
48,235 + -1.5
48,273 + +0.1
48,450 + -3.3
48,451 - -1.3
48,551 - -2.6
48,720 + -4.0
48,720 + -1.9
48,720 + -2.8
48,720 + -4.5
48,720 + -0.5
48,720 + -2.5
48,720 + -3.3
48,720 + -2.2
48,720 + -1.5
48,720 + +0.1
48,721 - -4.1
48,721 - -1.3
48,721 - -2.0
48,721 - +0.7
49,005 + Ac3H11_3026 0.12 -1.3
49,005 + Ac3H11_3026 0.12 -2.0

Or see this region's nucleotide sequence