Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2697

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2696 and Ac3H11_2697 are separated by 27 nucleotidesAc3H11_2697 and Ac3H11_2698 overlap by 4 nucleotides Ac3H11_2696 - hypothetical protein, at 991,945 to 993,243 _2696 Ac3H11_2697 - hypothetical protein, at 993,271 to 993,387 _2697 Ac3H11_2698 - hypothetical protein, at 993,384 to 994,802 _2698 Position (kb) 993 994Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 992.537 kb on + strand, within Ac3H11_2696at 992.538 kb on - strand, within Ac3H11_2696at 992.786 kb on + strand, within Ac3H11_2696at 992.786 kb on + strand, within Ac3H11_2696at 992.787 kb on - strand, within Ac3H11_2696at 992.787 kb on - strand, within Ac3H11_2696at 992.918 kb on + strand, within Ac3H11_2696at 992.918 kb on + strand, within Ac3H11_2696at 993.086 kb on + strand, within Ac3H11_2696at 993.086 kb on + strand, within Ac3H11_2696at 993.086 kb on + strand, within Ac3H11_2696at 993.086 kb on + strand, within Ac3H11_2696at 993.087 kb on - strand, within Ac3H11_2696at 993.087 kb on - strand, within Ac3H11_2696at 993.087 kb on - strand, within Ac3H11_2696at 993.087 kb on - strand, within Ac3H11_2696at 993.087 kb on - strand, within Ac3H11_2696at 993.368 kb on - strand, within Ac3H11_2697at 993.385 kb on + strandat 993.386 kb on - strandat 993.473 kb on + strandat 993.504 kb on + strandat 993.504 kb on + strandat 993.504 kb on + strandat 993.504 kb on + strandat 993.505 kb on - strandat 993.505 kb on - strandat 993.505 kb on - strandat 993.505 kb on - strandat 993.505 kb on - strandat 993.505 kb on - strandat 993.660 kb on + strand, within Ac3H11_2698at 993.730 kb on - strand, within Ac3H11_2698at 994.027 kb on + strand, within Ac3H11_2698at 994.027 kb on + strand, within Ac3H11_2698at 994.027 kb on + strand, within Ac3H11_2698at 994.028 kb on - strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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992,537 + Ac3H11_2696 0.46 -0.7
992,538 - Ac3H11_2696 0.46 -0.3
992,786 + Ac3H11_2696 0.65 +2.7
992,786 + Ac3H11_2696 0.65 +0.8
992,787 - Ac3H11_2696 0.65 -0.4
992,787 - Ac3H11_2696 0.65 +0.3
992,918 + Ac3H11_2696 0.75 +1.9
992,918 + Ac3H11_2696 0.75 -0.1
993,086 + Ac3H11_2696 0.88 +0.5
993,086 + Ac3H11_2696 0.88 +1.0
993,086 + Ac3H11_2696 0.88 +1.2
993,086 + Ac3H11_2696 0.88 +0.7
993,087 - Ac3H11_2696 0.88 +0.3
993,087 - Ac3H11_2696 0.88 -1.8
993,087 - Ac3H11_2696 0.88 +2.1
993,087 - Ac3H11_2696 0.88 -2.1
993,087 - Ac3H11_2696 0.88 -1.7
993,368 - Ac3H11_2697 0.83 +1.5
993,385 + -1.2
993,386 - +0.5
993,473 + +1.8
993,504 + +2.1
993,504 + +0.4
993,504 + +0.5
993,504 + -1.4
993,505 - +1.7
993,505 - -1.1
993,505 - -2.6
993,505 - -1.3
993,505 - -1.5
993,505 - -4.1
993,660 + Ac3H11_2698 0.19 -1.1
993,730 - Ac3H11_2698 0.24 +2.2
994,027 + Ac3H11_2698 0.45 +0.9
994,027 + Ac3H11_2698 0.45 +0.0
994,027 + Ac3H11_2698 0.45 +1.2
994,028 - Ac3H11_2698 0.45 -1.1
994,087 + Ac3H11_2698 0.50 -3.4
994,087 + Ac3H11_2698 0.50 -1.5
994,087 + Ac3H11_2698 0.50 +0.5
994,366 + Ac3H11_2698 0.69 -0.8
994,366 + Ac3H11_2698 0.69 +0.8
994,366 + Ac3H11_2698 0.69 -0.8
994,367 - Ac3H11_2698 0.69 +0.8
994,367 - Ac3H11_2698 0.69 -1.2
994,367 - Ac3H11_2698 0.69 -0.4
994,367 - Ac3H11_2698 0.69 +2.1

Or see this region's nucleotide sequence