Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2520 and Ac3H11_2521 are separated by 51 nucleotides Ac3H11_2521 and Ac3H11_2522 are separated by 372 nucleotides Ac3H11_2522 and Ac3H11_2523 are separated by 40 nucleotides
Ac3H11_2520 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 795,691 to 797,550
_2520
Ac3H11_2521 - hypothetical protein, at 797,602 to 798,024
_2521
Ac3H11_2522 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 798,397 to 799,572
_2522
Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712
_2523
Position (kb)
798
799
800 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 797.405 kb on + strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.406 kb on - strand at 797.516 kb on + strand at 797.516 kb on + strand at 797.517 kb on - strand at 798.215 kb on + strand at 798.215 kb on + strand at 798.215 kb on + strand at 798.216 kb on - strand at 798.216 kb on - strand at 798.216 kb on - strand at 798.378 kb on + strand at 798.378 kb on + strand at 798.378 kb on + strand at 798.379 kb on - strand at 798.379 kb on - strand at 798.379 kb on - strand at 798.430 kb on - strand at 798.430 kb on - strand at 798.527 kb on + strand, within Ac3H11_2522 at 798.602 kb on + strand, within Ac3H11_2522 at 798.602 kb on + strand, within Ac3H11_2522 at 798.603 kb on - strand, within Ac3H11_2522 at 798.789 kb on - strand, within Ac3H11_2522 at 798.789 kb on - strand, within Ac3H11_2522 at 798.789 kb on - strand, within Ac3H11_2522 at 798.891 kb on + strand, within Ac3H11_2522 at 798.891 kb on + strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.098 kb on - strand, within Ac3H11_2522 at 799.098 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.443 kb on + strand, within Ac3H11_2522 at 799.456 kb on + strand at 799.457 kb on - strand at 799.592 kb on + strand at 799.592 kb on + strand at 799.592 kb on + strand at 799.610 kb on + strand at 799.610 kb on + strand at 799.611 kb on - strand at 799.611 kb on - strand at 799.614 kb on + strand at 799.614 kb on + strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.749 kb on + strand at 799.749 kb on + strand at 799.749 kb on + strand at 799.750 kb on - strand at 799.797 kb on + strand at 799.797 kb on + strand at 799.797 kb on + strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.999 kb on - strand, within Ac3H11_2523 at 799.999 kb on - strand, within Ac3H11_2523 at 800.070 kb on + strand, within Ac3H11_2523 at 800.070 kb on + strand, within Ac3H11_2523 at 800.071 kb on - strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.245 kb on - strand, within Ac3H11_2523 at 800.473 kb on + strand, within Ac3H11_2523 at 800.473 kb on + strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 797,405 + +2.0 797,405 + -2.7 797,405 + +1.3 797,405 + -1.0 797,406 - +1.1 797,406 - -0.5 797,406 - -0.2 797,406 - +0.8 797,406 - +0.9 797,406 - +1.4 797,406 - -3.0 797,516 + -0.9 797,516 + +1.4 797,517 - -1.2 798,215 + -3.9 798,215 + -1.5 798,215 + -0.9 798,216 - +1.4 798,216 - +1.1 798,216 - +0.8 798,378 + +0.3 798,378 + +1.9 798,378 + -0.2 798,379 - -2.5 798,379 - +0.8 798,379 - -0.0 798,430 - -1.2 798,430 - -1.2 798,527 + Ac3H11_2522 0.11 -1.2 798,602 + Ac3H11_2522 0.17 -1.5 798,602 + Ac3H11_2522 0.17 +0.9 798,603 - Ac3H11_2522 0.18 -0.2 798,789 - Ac3H11_2522 0.33 +2.0 798,789 - Ac3H11_2522 0.33 -1.3 798,789 - Ac3H11_2522 0.33 -1.3 798,891 + Ac3H11_2522 0.42 +0.3 798,891 + Ac3H11_2522 0.42 +0.2 798,892 - Ac3H11_2522 0.42 +0.7 798,892 - Ac3H11_2522 0.42 -0.0 798,892 - Ac3H11_2522 0.42 +0.7 798,892 - Ac3H11_2522 0.42 +0.9 799,067 + Ac3H11_2522 0.57 +0.8 799,067 + Ac3H11_2522 0.57 +1.8 799,067 + Ac3H11_2522 0.57 +0.6 799,097 + Ac3H11_2522 0.60 -1.4 799,097 + Ac3H11_2522 0.60 -1.0 799,097 + Ac3H11_2522 0.60 -0.0 799,098 - Ac3H11_2522 0.60 -2.3 799,098 - Ac3H11_2522 0.60 +1.3 799,140 - Ac3H11_2522 0.63 -3.4 799,140 - Ac3H11_2522 0.63 -0.2 799,140 - Ac3H11_2522 0.63 -3.0 799,443 + Ac3H11_2522 0.89 -1.6 799,456 + +0.8 799,457 - -1.6 799,592 + -3.0 799,592 + -0.4 799,592 + -3.1 799,610 + -0.9 799,610 + -0.4 799,611 - +1.3 799,611 - -0.0 799,614 + +0.7 799,614 + -2.1 799,615 - +2.2 799,615 - -3.4 799,615 - -1.2 799,615 - +0.6 799,615 - -1.2 799,615 - +2.2 799,749 + +0.2 799,749 + +1.4 799,749 + +0.2 799,750 - -1.8 799,797 + +0.6 799,797 + -0.0 799,797 + +1.3 799,798 - +0.0 799,798 - -0.8 799,798 - +1.1 799,798 - -0.4 799,798 - +1.1 799,798 - -0.3 799,999 - Ac3H11_2523 0.18 -2.0 799,999 - Ac3H11_2523 0.18 -1.4 800,070 + Ac3H11_2523 0.22 +0.3 800,070 + Ac3H11_2523 0.22 +1.3 800,071 - Ac3H11_2523 0.22 -3.0 800,244 + Ac3H11_2523 0.30 -2.7 800,244 + Ac3H11_2523 0.30 -0.3 800,244 + Ac3H11_2523 0.30 -1.7 800,244 + Ac3H11_2523 0.30 -2.2 800,244 + Ac3H11_2523 0.30 +1.5 800,245 - Ac3H11_2523 0.30 -0.3 800,473 + Ac3H11_2523 0.41 -0.6 800,473 + Ac3H11_2523 0.41 -0.3 800,474 - Ac3H11_2523 0.41 +0.3 800,474 - Ac3H11_2523 0.41 +0.4 800,474 - Ac3H11_2523 0.41 +1.6 800,474 - Ac3H11_2523 0.41 -0.1 800,474 - Ac3H11_2523 0.41 +1.0 800,474 - Ac3H11_2523 0.41 -1.4
Or see this region's nucleotide sequence