Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2485

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2483 and Ac3H11_2484 overlap by 1 nucleotidesAc3H11_2484 and Ac3H11_2485 are separated by 44 nucleotidesAc3H11_2485 and Ac3H11_2486 are separated by 184 nucleotides Ac3H11_2483 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 750,231 to 751,022 _2483 Ac3H11_2484 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 751,022 to 751,564 _2484 Ac3H11_2485 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 751,609 to 752,928 _2485 Ac3H11_2486 - Lipid A export ATP-binding/permease protein MsbA, at 753,113 to 754,915 _2486 Position (kb) 751 752 753Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 751.029 kb on + strandat 751.029 kb on + strandat 751.030 kb on - strandat 751.030 kb on - strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strandat 751.605 kb on - strandat 752.977 kb on + strandat 752.977 kb on + strandat 752.978 kb on - strandat 752.978 kb on - strandat 752.978 kb on - strandat 752.978 kb on - strandat 752.990 kb on - strandat 752.990 kb on - strandat 753.038 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.098 kb on + strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strandat 753.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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751,029 + +2.3
751,029 + -0.0
751,030 - +1.5
751,030 - -2.4
751,589 - +1.5
751,589 - -1.0
751,589 - -2.0
751,605 - -2.4
751,605 - -2.5
751,605 - -3.4
751,605 - -1.4
752,977 + -1.0
752,977 + -2.1
752,978 - +2.6
752,978 - +1.6
752,978 - +1.3
752,978 - -0.4
752,990 - -3.9
752,990 - +1.6
753,038 + -0.8
753,098 + -1.3
753,098 + -2.9
753,098 + +0.7
753,098 + -3.3
753,098 + -1.9
753,098 + -2.4
753,098 + -2.0
753,098 + -0.6
753,098 + +0.3
753,098 + -0.1
753,099 - +0.2
753,099 - +0.8
753,099 - -1.7
753,099 - +0.0
753,099 - +1.5
753,099 - -0.1
753,099 - -0.3
753,099 - +0.1
753,099 - +0.8
753,099 - +0.1
753,099 - -1.4
753,099 - -0.6

Or see this region's nucleotide sequence