Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2202

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2201 and Ac3H11_2202 are separated by 117 nucleotidesAc3H11_2202 and Ac3H11_2203 are separated by 2 nucleotides Ac3H11_2201 - PQQ-dependent oxidoreductase, gdhB family, at 429,539 to 430,690 _2201 Ac3H11_2202 - Thymidine phosphorylase (EC 2.4.2.4), at 430,808 to 432,415 _2202 Ac3H11_2203 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 432,418 to 433,329 _2203 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 429.878 kb on + strand, within Ac3H11_2201at 429.878 kb on + strand, within Ac3H11_2201at 429.878 kb on + strand, within Ac3H11_2201at 429.878 kb on + strand, within Ac3H11_2201at 429.879 kb on - strand, within Ac3H11_2201at 429.879 kb on - strand, within Ac3H11_2201at 429.879 kb on - strand, within Ac3H11_2201at 430.082 kb on + strand, within Ac3H11_2201at 430.082 kb on + strand, within Ac3H11_2201at 430.177 kb on + strand, within Ac3H11_2201at 430.178 kb on - strand, within Ac3H11_2201at 430.178 kb on - strand, within Ac3H11_2201at 430.178 kb on - strand, within Ac3H11_2201at 430.178 kb on - strand, within Ac3H11_2201at 430.214 kb on + strand, within Ac3H11_2201at 430.215 kb on - strand, within Ac3H11_2201at 430.215 kb on - strand, within Ac3H11_2201at 430.215 kb on - strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.263 kb on + strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.264 kb on - strand, within Ac3H11_2201at 430.329 kb on - strand, within Ac3H11_2201at 430.349 kb on + strand, within Ac3H11_2201at 430.350 kb on - strand, within Ac3H11_2201at 430.350 kb on - strand, within Ac3H11_2201at 430.350 kb on - strand, within Ac3H11_2201at 430.350 kb on - strand, within Ac3H11_2201at 430.361 kb on + strand, within Ac3H11_2201at 430.361 kb on + strand, within Ac3H11_2201at 430.361 kb on + strand, within Ac3H11_2201at 430.361 kb on + strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.362 kb on - strand, within Ac3H11_2201at 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.637 kb on + strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.638 kb on - strandat 430.639 kb on + strandat 430.639 kb on + strandat 430.639 kb on + strandat 430.639 kb on + strandat 430.640 kb on - strandat 430.640 kb on - strandat 430.640 kb on - strandat 430.640 kb on - strandat 430.640 kb on - strandat 430.771 kb on + strandat 430.771 kb on + strandat 430.771 kb on + strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.772 kb on - strandat 430.796 kb on + strandat 430.797 kb on - strandat 430.934 kb on + strandat 430.934 kb on + strandat 430.934 kb on + strandat 430.934 kb on + strandat 430.934 kb on + strandat 430.934 kb on + strandat 430.935 kb on - strandat 430.935 kb on - strandat 431.198 kb on - strand, within Ac3H11_2202at 431.198 kb on - strand, within Ac3H11_2202at 431.198 kb on - strand, within Ac3H11_2202at 431.198 kb on - strand, within Ac3H11_2202at 431.246 kb on + strand, within Ac3H11_2202at 431.246 kb on + strand, within Ac3H11_2202at 431.576 kb on + strand, within Ac3H11_2202at 431.577 kb on - strand, within Ac3H11_2202at 431.807 kb on + strand, within Ac3H11_2202at 431.807 kb on + strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 431.808 kb on - strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.188 kb on + strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.189 kb on - strand, within Ac3H11_2202at 432.296 kb on + strandat 432.297 kb on - strandat 432.448 kb on + strandat 432.448 kb on + strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.449 kb on - strandat 432.657 kb on + strand, within Ac3H11_2203at 432.658 kb on - strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.703 kb on + strand, within Ac3H11_2203at 432.704 kb on - strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.712 kb on + strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.713 kb on - strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.714 kb on + strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.715 kb on - strand, within Ac3H11_2203at 432.873 kb on - strand, within Ac3H11_2203at 432.873 kb on - strand, within Ac3H11_2203at 433.327 kb on + strandat 433.327 kb on + strandat 433.328 kb on - strandat 433.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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429,878 + Ac3H11_2201 0.29 +2.3
429,878 + Ac3H11_2201 0.29 +1.5
429,878 + Ac3H11_2201 0.29 +0.4
429,878 + Ac3H11_2201 0.29 -3.0
429,879 - Ac3H11_2201 0.30 +1.6
429,879 - Ac3H11_2201 0.30 +1.1
429,879 - Ac3H11_2201 0.30 -1.7
430,082 + Ac3H11_2201 0.47 -1.4
430,082 + Ac3H11_2201 0.47 +1.7
430,177 + Ac3H11_2201 0.55 +0.5
430,178 - Ac3H11_2201 0.55 +0.1
430,178 - Ac3H11_2201 0.55 -2.9
430,178 - Ac3H11_2201 0.55 +3.0
430,178 - Ac3H11_2201 0.55 -2.8
430,214 + Ac3H11_2201 0.59 +0.7
430,215 - Ac3H11_2201 0.59 -1.3
430,215 - Ac3H11_2201 0.59 +1.5
430,215 - Ac3H11_2201 0.59 -0.4
430,263 + Ac3H11_2201 0.63 -1.1
430,263 + Ac3H11_2201 0.63 -0.6
430,263 + Ac3H11_2201 0.63 -0.8
430,263 + Ac3H11_2201 0.63 -0.7
430,263 + Ac3H11_2201 0.63 +2.3
430,263 + Ac3H11_2201 0.63 +1.2
430,263 + Ac3H11_2201 0.63 +1.1
430,263 + Ac3H11_2201 0.63 -3.9
430,263 + Ac3H11_2201 0.63 +0.9
430,263 + Ac3H11_2201 0.63 +0.9
430,264 - Ac3H11_2201 0.63 +1.3
430,264 - Ac3H11_2201 0.63 +0.5
430,264 - Ac3H11_2201 0.63 +0.9
430,264 - Ac3H11_2201 0.63 +1.4
430,264 - Ac3H11_2201 0.63 -1.0
430,264 - Ac3H11_2201 0.63 -1.1
430,264 - Ac3H11_2201 0.63 +1.7
430,264 - Ac3H11_2201 0.63 +1.5
430,264 - Ac3H11_2201 0.63 -2.3
430,264 - Ac3H11_2201 0.63 +1.4
430,329 - Ac3H11_2201 0.69 +0.2
430,349 + Ac3H11_2201 0.70 -2.4
430,350 - Ac3H11_2201 0.70 -1.1
430,350 - Ac3H11_2201 0.70 -0.3
430,350 - Ac3H11_2201 0.70 -1.6
430,350 - Ac3H11_2201 0.70 -2.2
430,361 + Ac3H11_2201 0.71 +2.8
430,361 + Ac3H11_2201 0.71 +0.2
430,361 + Ac3H11_2201 0.71 -0.7
430,361 + Ac3H11_2201 0.71 -1.7
430,362 - Ac3H11_2201 0.71 -0.4
430,362 - Ac3H11_2201 0.71 +1.5
430,362 - Ac3H11_2201 0.71 -2.5
430,362 - Ac3H11_2201 0.71 +2.0
430,362 - Ac3H11_2201 0.71 +0.3
430,362 - Ac3H11_2201 0.71 -2.7
430,362 - Ac3H11_2201 0.71 -0.4
430,637 + -3.6
430,637 + -0.1
430,637 + +0.5
430,637 + +1.6
430,637 + -0.7
430,637 + -0.1
430,637 + -1.7
430,637 + -1.4
430,637 + +0.5
430,637 + +0.6
430,637 + +0.2
430,637 + +1.3
430,637 + -0.1
430,637 + -2.6
430,638 - -0.1
430,638 - -2.9
430,638 - +1.4
430,638 - +0.7
430,638 - -0.5
430,638 - +1.0
430,638 - +0.6
430,638 - +1.5
430,638 - -3.9
430,638 - -2.0
430,638 - -0.1
430,638 - -1.9
430,638 - +1.1
430,638 - -1.7
430,638 - -1.3
430,638 - -0.2
430,638 - +0.0
430,638 - +0.8
430,638 - -2.3
430,638 - -1.4
430,639 + -0.1
430,639 + +0.6
430,639 + -0.4
430,639 + -1.3
430,640 - -0.0
430,640 - +2.3
430,640 - +0.6
430,640 - +1.9
430,640 - +0.5
430,771 + +1.8
430,771 + +0.4
430,771 + -3.4
430,772 - +0.4
430,772 - +0.2
430,772 - +1.3
430,772 - -0.9
430,772 - -2.5
430,772 - -1.9
430,772 - +0.6
430,772 - +0.1
430,772 - -1.6
430,796 + +2.5
430,797 - -2.1
430,934 + -2.7
430,934 + -3.4
430,934 + +2.1
430,934 + -0.6
430,934 + -0.2
430,934 + +0.6
430,935 - +1.6
430,935 - +0.5
431,198 - Ac3H11_2202 0.24 +0.6
431,198 - Ac3H11_2202 0.24 -0.3
431,198 - Ac3H11_2202 0.24 -3.0
431,198 - Ac3H11_2202 0.24 -1.7
431,246 + Ac3H11_2202 0.27 +1.4
431,246 + Ac3H11_2202 0.27 +1.8
431,576 + Ac3H11_2202 0.48 +2.4
431,577 - Ac3H11_2202 0.48 +0.1
431,807 + Ac3H11_2202 0.62 +0.5
431,807 + Ac3H11_2202 0.62 +0.4
431,808 - Ac3H11_2202 0.62 +1.6
431,808 - Ac3H11_2202 0.62 +2.5
431,808 - Ac3H11_2202 0.62 -1.1
431,808 - Ac3H11_2202 0.62 +0.8
432,188 + Ac3H11_2202 0.86 +1.6
432,188 + Ac3H11_2202 0.86 +0.9
432,188 + Ac3H11_2202 0.86 -3.7
432,188 + Ac3H11_2202 0.86 -2.7
432,189 - Ac3H11_2202 0.86 -2.0
432,189 - Ac3H11_2202 0.86 +3.6
432,189 - Ac3H11_2202 0.86 -2.4
432,296 + +1.0
432,297 - -0.2
432,448 + +2.7
432,448 + -0.8
432,449 - +1.5
432,449 - -0.4
432,449 - -0.7
432,449 - -1.1
432,449 - -2.5
432,449 - -0.5
432,449 - -1.0
432,657 + Ac3H11_2203 0.26 +3.2
432,658 - Ac3H11_2203 0.26 -2.4
432,703 + Ac3H11_2203 0.31 -0.2
432,703 + Ac3H11_2203 0.31 +0.8
432,703 + Ac3H11_2203 0.31 +2.7
432,704 - Ac3H11_2203 0.31 +0.4
432,712 + Ac3H11_2203 0.32 +0.7
432,712 + Ac3H11_2203 0.32 +1.4
432,712 + Ac3H11_2203 0.32 +0.3
432,712 + Ac3H11_2203 0.32 +0.3
432,712 + Ac3H11_2203 0.32 +0.2
432,712 + Ac3H11_2203 0.32 -1.2
432,712 + Ac3H11_2203 0.32 -0.9
432,712 + Ac3H11_2203 0.32 -0.1
432,712 + Ac3H11_2203 0.32 -0.5
432,712 + Ac3H11_2203 0.32 -0.8
432,712 + Ac3H11_2203 0.32 +0.9
432,712 + Ac3H11_2203 0.32 -0.1
432,712 + Ac3H11_2203 0.32 -0.7
432,713 - Ac3H11_2203 0.32 +1.7
432,713 - Ac3H11_2203 0.32 +0.2
432,713 - Ac3H11_2203 0.32 +0.8
432,713 - Ac3H11_2203 0.32 +0.6
432,713 - Ac3H11_2203 0.32 +3.4
432,713 - Ac3H11_2203 0.32 +2.1
432,713 - Ac3H11_2203 0.32 +1.3
432,713 - Ac3H11_2203 0.32 +0.8
432,713 - Ac3H11_2203 0.32 -1.2
432,714 + Ac3H11_2203 0.32 +0.9
432,714 + Ac3H11_2203 0.32 +1.2
432,714 + Ac3H11_2203 0.32 +1.4
432,714 + Ac3H11_2203 0.32 -0.5
432,714 + Ac3H11_2203 0.32 +2.5
432,715 - Ac3H11_2203 0.33 -0.0
432,715 - Ac3H11_2203 0.33 +2.0
432,715 - Ac3H11_2203 0.33 +0.7
432,715 - Ac3H11_2203 0.33 +1.4
432,715 - Ac3H11_2203 0.33 -0.0
432,873 - Ac3H11_2203 0.50 +1.7
432,873 - Ac3H11_2203 0.50 +0.2
433,327 + +0.7
433,327 + -2.3
433,328 - -2.0
433,328 - -3.3

Or see this region's nucleotide sequence