Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2194

Experiment: Cisplatin 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2192 and Ac3H11_2193 are separated by 289 nucleotidesAc3H11_2193 and Ac3H11_2194 are separated by 70 nucleotidesAc3H11_2194 and Ac3H11_2195 are separated by 145 nucleotides Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943 _2192 Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616 _2193 Ac3H11_2194 - putative exported protein, at 423,687 to 424,688 _2194 Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528 _2195 Position (kb) 423 424 425Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 422.732 kb on + strand, within Ac3H11_2192at 422.733 kb on - strand, within Ac3H11_2192at 422.819 kb on + strand, within Ac3H11_2192at 423.082 kb on - strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.127 kb on + strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.128 kb on - strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.132 kb on + strandat 423.133 kb on - strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.139 kb on + strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.140 kb on - strandat 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.368 kb on + strand, within Ac3H11_2193at 423.369 kb on - strand, within Ac3H11_2193at 423.369 kb on - strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.401 kb on + strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.402 kb on - strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.488 kb on + strand, within Ac3H11_2193at 423.489 kb on - strand, within Ac3H11_2193at 423.576 kb on - strand, within Ac3H11_2193at 423.589 kb on - strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.668 kb on + strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.669 kb on - strandat 423.976 kb on - strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.026 kb on + strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.027 kb on - strand, within Ac3H11_2194at 424.266 kb on + strand, within Ac3H11_2194at 424.267 kb on - strand, within Ac3H11_2194at 425.000 kb on + strandat 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.044 kb on + strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.045 kb on - strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.158 kb on + strand, within Ac3H11_2195at 425.159 kb on - strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.389 kb on + strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.390 kb on - strand, within Ac3H11_2195at 425.398 kb on + strand, within Ac3H11_2195at 425.399 kb on - strand, within Ac3H11_2195at 425.443 kb on + strand, within Ac3H11_2195at 425.443 kb on + strand, within Ac3H11_2195at 425.444 kb on - strand, within Ac3H11_2195at 425.444 kb on - strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.467 kb on + strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.468 kb on - strand, within Ac3H11_2195at 425.530 kb on + strand, within Ac3H11_2195at 425.530 kb on + strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195at 425.531 kb on - strand, within Ac3H11_2195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
remove
422,732 + Ac3H11_2192 0.75 -1.1
422,733 - Ac3H11_2192 0.75 -3.0
422,819 + Ac3H11_2192 0.85 +1.6
423,082 - -0.3
423,127 + +0.0
423,127 + -0.3
423,127 + -0.3
423,127 + -0.8
423,127 + -0.6
423,127 + +0.4
423,127 + -0.9
423,128 - -2.3
423,128 - +0.2
423,128 - +0.7
423,128 - +1.2
423,128 - -2.2
423,132 + +1.2
423,132 + -0.5
423,132 + +1.9
423,132 + +0.9
423,133 - +0.9
423,139 + -1.5
423,139 + -0.2
423,139 + -2.2
423,139 + -0.8
423,139 + +1.7
423,139 + +2.0
423,139 + -2.0
423,140 - -3.0
423,140 - +0.7
423,140 - -3.4
423,140 - +0.3
423,140 - -0.1
423,140 - -3.9
423,140 - +0.1
423,140 - -1.1
423,140 - +2.0
423,368 + Ac3H11_2193 0.35 +1.1
423,368 + Ac3H11_2193 0.35 -1.9
423,368 + Ac3H11_2193 0.35 -0.4
423,368 + Ac3H11_2193 0.35 +0.8
423,369 - Ac3H11_2193 0.35 -1.6
423,369 - Ac3H11_2193 0.35 -1.7
423,401 + Ac3H11_2193 0.44 -1.9
423,401 + Ac3H11_2193 0.44 +0.2
423,401 + Ac3H11_2193 0.44 +0.0
423,401 + Ac3H11_2193 0.44 +1.1
423,401 + Ac3H11_2193 0.44 +2.1
423,401 + Ac3H11_2193 0.44 -0.5
423,402 - Ac3H11_2193 0.44 -2.1
423,402 - Ac3H11_2193 0.44 +0.7
423,402 - Ac3H11_2193 0.44 +1.7
423,402 - Ac3H11_2193 0.44 +1.5
423,402 - Ac3H11_2193 0.44 -2.4
423,402 - Ac3H11_2193 0.44 +0.1
423,402 - Ac3H11_2193 0.44 -0.9
423,402 - Ac3H11_2193 0.44 +1.8
423,488 + Ac3H11_2193 0.66 -1.3
423,488 + Ac3H11_2193 0.66 +0.6
423,488 + Ac3H11_2193 0.66 +1.0
423,488 + Ac3H11_2193 0.66 +1.2
423,488 + Ac3H11_2193 0.66 -2.4
423,489 - Ac3H11_2193 0.67 -0.5
423,576 - Ac3H11_2193 0.89 +0.8
423,589 - +3.0
423,668 + -3.8
423,668 + -0.7
423,668 + +0.4
423,668 + +0.1
423,668 + +1.4
423,668 + -2.2
423,668 + -3.0
423,668 + -0.1
423,668 + +1.9
423,669 - +0.4
423,669 - -0.6
423,669 - -2.4
423,669 - +2.8
423,669 - +0.6
423,976 - Ac3H11_2194 0.29 -0.2
424,026 + Ac3H11_2194 0.34 -1.0
424,026 + Ac3H11_2194 0.34 +1.6
424,027 - Ac3H11_2194 0.34 +1.3
424,027 - Ac3H11_2194 0.34 +1.4
424,027 - Ac3H11_2194 0.34 +0.8
424,266 + Ac3H11_2194 0.58 -0.1
424,267 - Ac3H11_2194 0.58 -0.8
425,000 + -0.3
425,044 + Ac3H11_2195 0.12 -1.2
425,044 + Ac3H11_2195 0.12 -2.6
425,044 + Ac3H11_2195 0.12 -0.1
425,044 + Ac3H11_2195 0.12 -1.8
425,044 + Ac3H11_2195 0.12 -0.1
425,045 - Ac3H11_2195 0.12 -1.2
425,045 - Ac3H11_2195 0.12 -1.8
425,045 - Ac3H11_2195 0.12 -3.6
425,045 - Ac3H11_2195 0.12 +1.2
425,045 - Ac3H11_2195 0.12 -0.5
425,045 - Ac3H11_2195 0.12 +0.7
425,045 - Ac3H11_2195 0.12 +0.4
425,045 - Ac3H11_2195 0.12 +0.6
425,045 - Ac3H11_2195 0.12 -3.6
425,045 - Ac3H11_2195 0.12 +0.6
425,158 + Ac3H11_2195 0.19 +2.3
425,158 + Ac3H11_2195 0.19 -0.2
425,158 + Ac3H11_2195 0.19 -0.5
425,159 - Ac3H11_2195 0.19 +0.4
425,389 + Ac3H11_2195 0.33 +1.7
425,389 + Ac3H11_2195 0.33 -1.8
425,389 + Ac3H11_2195 0.33 +0.4
425,389 + Ac3H11_2195 0.33 +0.3
425,389 + Ac3H11_2195 0.33 -1.1
425,389 + Ac3H11_2195 0.33 -2.2
425,389 + Ac3H11_2195 0.33 -2.0
425,390 - Ac3H11_2195 0.33 +0.0
425,390 - Ac3H11_2195 0.33 +0.6
425,390 - Ac3H11_2195 0.33 +0.6
425,390 - Ac3H11_2195 0.33 +1.1
425,390 - Ac3H11_2195 0.33 +3.1
425,398 + Ac3H11_2195 0.33 +1.3
425,399 - Ac3H11_2195 0.33 +0.4
425,443 + Ac3H11_2195 0.36 +1.4
425,443 + Ac3H11_2195 0.36 -2.4
425,444 - Ac3H11_2195 0.36 +0.4
425,444 - Ac3H11_2195 0.36 +0.5
425,467 + Ac3H11_2195 0.37 +0.2
425,467 + Ac3H11_2195 0.37 -1.6
425,467 + Ac3H11_2195 0.37 +0.0
425,467 + Ac3H11_2195 0.37 -0.9
425,467 + Ac3H11_2195 0.37 +2.5
425,467 + Ac3H11_2195 0.37 -2.3
425,468 - Ac3H11_2195 0.37 +1.1
425,468 - Ac3H11_2195 0.37 -0.4
425,468 - Ac3H11_2195 0.37 -3.6
425,468 - Ac3H11_2195 0.37 -0.4
425,530 + Ac3H11_2195 0.41 -1.6
425,530 + Ac3H11_2195 0.41 +1.0
425,531 - Ac3H11_2195 0.41 -1.3
425,531 - Ac3H11_2195 0.41 +0.4
425,531 - Ac3H11_2195 0.41 +1.3

Or see this region's nucleotide sequence