Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1823

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1820 and Ac3H11_1821 are separated by 49 nucleotidesAc3H11_1821 and Ac3H11_1822 are separated by 33 nucleotidesAc3H11_1822 and Ac3H11_1823 are separated by 12 nucleotidesAc3H11_1823 and Ac3H11_1824 are separated by 23 nucleotidesAc3H11_1824 and Ac3H11_1825 overlap by 10 nucleotides Ac3H11_1820 - COG1565: Uncharacterized conserved protein, at 24,479 to 25,597 _1820 Ac3H11_1821 - hypothetical protein, at 25,647 to 25,805 _1821 Ac3H11_1822 - Thioredoxin, at 25,839 to 26,306 _1822 Ac3H11_1823 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 26,319 to 26,792 _1823 Ac3H11_1824 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 26,816 to 27,577 _1824 Ac3H11_1825 - Uncharacterized protein conserved in bacteria, NMA0228-like, at 27,568 to 28,428 _1825 Position (kb) 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 25.645 kb on + strandat 25.645 kb on + strandat 25.646 kb on - strandat 25.646 kb on - strandat 25.803 kb on + strandat 25.803 kb on + strandat 25.803 kb on + strandat 25.804 kb on - strandat 25.980 kb on - strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.187 kb on + strand, within Ac3H11_1822at 26.304 kb on + strandat 26.305 kb on - strandat 26.377 kb on + strand, within Ac3H11_1823at 26.377 kb on + strand, within Ac3H11_1823at 26.377 kb on + strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.378 kb on - strand, within Ac3H11_1823at 26.425 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.576 kb on - strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.597 kb on - strand, within Ac3H11_1823at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.423 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.694 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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25,645 + -0.0
25,645 + +0.3
25,646 - -1.8
25,646 - -1.3
25,803 + +1.8
25,803 + +1.2
25,803 + -1.0
25,804 - +1.8
25,980 - Ac3H11_1822 0.30 -3.8
26,187 + Ac3H11_1822 0.74 +0.2
26,187 + Ac3H11_1822 0.74 +0.5
26,187 + Ac3H11_1822 0.74 +3.4
26,187 + Ac3H11_1822 0.74 +0.5
26,187 + Ac3H11_1822 0.74 -0.1
26,304 + +2.2
26,305 - +1.5
26,377 + Ac3H11_1823 0.12 -0.3
26,377 + Ac3H11_1823 0.12 -1.4
26,377 + Ac3H11_1823 0.12 -1.7
26,378 - Ac3H11_1823 0.12 +2.7
26,378 - Ac3H11_1823 0.12 -0.2
26,378 - Ac3H11_1823 0.12 -1.4
26,425 + Ac3H11_1823 0.22 +0.1
26,575 + Ac3H11_1823 0.54 +1.7
26,575 + Ac3H11_1823 0.54 -0.2
26,575 + Ac3H11_1823 0.54 -0.4
26,575 + Ac3H11_1823 0.54 +1.2
26,575 + Ac3H11_1823 0.54 -2.8
26,576 - Ac3H11_1823 0.54 +2.2
26,596 + Ac3H11_1823 0.58 +1.4
26,596 + Ac3H11_1823 0.58 -1.9
26,596 + Ac3H11_1823 0.58 -0.2
26,597 - Ac3H11_1823 0.59 -0.3
27,267 + Ac3H11_1824 0.59 +2.9
27,267 + Ac3H11_1824 0.59 +1.1
27,267 + Ac3H11_1824 0.59 +0.4
27,268 - Ac3H11_1824 0.59 +0.6
27,268 - Ac3H11_1824 0.59 -2.4
27,324 + Ac3H11_1824 0.67 -1.3
27,324 + Ac3H11_1824 0.67 +0.5
27,324 + Ac3H11_1824 0.67 -0.9
27,324 + Ac3H11_1824 0.67 -1.4
27,325 - Ac3H11_1824 0.67 -0.2
27,325 - Ac3H11_1824 0.67 -4.2
27,325 - Ac3H11_1824 0.67 -1.8
27,366 + Ac3H11_1824 0.72 -2.3
27,366 + Ac3H11_1824 0.72 -1.7
27,366 + Ac3H11_1824 0.72 +2.6
27,366 + Ac3H11_1824 0.72 -1.5
27,366 + Ac3H11_1824 0.72 -1.5
27,367 - Ac3H11_1824 0.72 +0.5
27,367 - Ac3H11_1824 0.72 -0.9
27,367 - Ac3H11_1824 0.72 +1.3
27,423 + Ac3H11_1824 0.80 +0.9
27,463 + Ac3H11_1824 0.85 +2.2
27,463 + Ac3H11_1824 0.85 +2.6
27,463 + Ac3H11_1824 0.85 +1.4
27,463 + Ac3H11_1824 0.85 +3.2
27,463 + Ac3H11_1824 0.85 +1.7
27,464 - Ac3H11_1824 0.85 +0.1
27,464 - Ac3H11_1824 0.85 +0.4
27,471 + Ac3H11_1824 0.86 +1.4
27,471 + Ac3H11_1824 0.86 -0.9
27,694 + Ac3H11_1825 0.15 -2.6
27,725 + Ac3H11_1825 0.18 -3.4
27,725 + Ac3H11_1825 0.18 -3.6
27,725 + Ac3H11_1825 0.18 -0.4
27,725 + Ac3H11_1825 0.18 -2.7
27,725 + Ac3H11_1825 0.18 +1.0
27,725 + Ac3H11_1825 0.18 -1.5
27,725 + Ac3H11_1825 0.18 +0.0
27,726 - Ac3H11_1825 0.18 +0.0
27,726 - Ac3H11_1825 0.18 +2.0
27,726 - Ac3H11_1825 0.18 +0.7
27,726 - Ac3H11_1825 0.18 +0.6
27,726 - Ac3H11_1825 0.18 +0.4
27,790 + Ac3H11_1825 0.26 -0.2
27,790 + Ac3H11_1825 0.26 +0.4
27,790 + Ac3H11_1825 0.26 -1.1
27,790 + Ac3H11_1825 0.26 -1.8
27,791 - Ac3H11_1825 0.26 -1.7
27,791 - Ac3H11_1825 0.26 -1.7
27,791 - Ac3H11_1825 0.26 +0.1

Or see this region's nucleotide sequence