Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1385

Experiment: Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1384 and Ac3H11_1385 overlap by 4 nucleotidesAc3H11_1385 and Ac3H11_1386 are separated by 264 nucleotidesAc3H11_1386 and Ac3H11_1387 are separated by 4 nucleotides Ac3H11_1384 - Flagellar biosynthesis protein FlhA, at 72,214 to 74,295 _1384 Ac3H11_1385 - Flagellar biosynthesis protein FlhB, at 74,292 to 75,446 _1385 Ac3H11_1386 - Chemotaxis response - phosphatase CheZ, at 75,711 to 76,331 _1386 Ac3H11_1387 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 76,336 to 76,722 _1387 Position (kb) 74 75 76Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 73.332 kb on - strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.571 kb on + strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 73.572 kb on - strand, within Ac3H11_1384at 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.105 kb on + strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.106 kb on - strandat 74.282 kb on - strandat 74.282 kb on - strandat 74.295 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.350 kb on + strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.351 kb on - strandat 74.411 kb on - strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.416 kb on + strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.417 kb on - strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.443 kb on + strand, within Ac3H11_1385at 74.444 kb on - strand, within Ac3H11_1385at 74.485 kb on + strand, within Ac3H11_1385at 74.485 kb on + strand, within Ac3H11_1385at 74.486 kb on - strand, within Ac3H11_1385at 74.486 kb on - strand, within Ac3H11_1385at 74.617 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.635 kb on + strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.636 kb on - strand, within Ac3H11_1385at 74.954 kb on + strand, within Ac3H11_1385at 74.954 kb on + strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 74.955 kb on - strand, within Ac3H11_1385at 75.499 kb on + strandat 75.500 kb on - strandat 75.509 kb on + strandat 75.615 kb on + strandat 75.619 kb on + strandat 75.663 kb on + strandat 75.663 kb on + strandat 75.663 kb on + strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.664 kb on - strandat 75.831 kb on + strand, within Ac3H11_1386at 75.831 kb on + strand, within Ac3H11_1386at 75.831 kb on + strand, within Ac3H11_1386at 75.832 kb on - strand, within Ac3H11_1386at 75.832 kb on - strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.860 kb on + strand, within Ac3H11_1386at 75.861 kb on - strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.171 kb on + strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.172 kb on - strand, within Ac3H11_1386at 76.290 kb on + strandat 76.290 kb on + strandat 76.290 kb on + strandat 76.290 kb on + strandat 76.291 kb on - strandat 76.291 kb on - strandat 76.291 kb on - strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.339 kb on + strandat 76.340 kb on - strandat 76.340 kb on - strandat 76.340 kb on - strandat 76.392 kb on + strand, within Ac3H11_1387at 76.392 kb on + strand, within Ac3H11_1387at 76.393 kb on - strand, within Ac3H11_1387at 76.409 kb on + strand, within Ac3H11_1387at 76.409 kb on + strand, within Ac3H11_1387at 76.410 kb on - strand, within Ac3H11_1387at 76.410 kb on - strand, within Ac3H11_1387

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml
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73,332 - Ac3H11_1384 0.54 +0.6
73,571 + Ac3H11_1384 0.65 -0.6
73,571 + Ac3H11_1384 0.65 +0.1
73,571 + Ac3H11_1384 0.65 -2.8
73,571 + Ac3H11_1384 0.65 -1.7
73,571 + Ac3H11_1384 0.65 -0.0
73,571 + Ac3H11_1384 0.65 +1.8
73,571 + Ac3H11_1384 0.65 -3.2
73,571 + Ac3H11_1384 0.65 +1.0
73,572 - Ac3H11_1384 0.65 -3.4
73,572 - Ac3H11_1384 0.65 -2.5
73,572 - Ac3H11_1384 0.65 +0.1
73,572 - Ac3H11_1384 0.65 +2.3
73,572 - Ac3H11_1384 0.65 -3.0
73,572 - Ac3H11_1384 0.65 +0.3
73,572 - Ac3H11_1384 0.65 -0.8
73,572 - Ac3H11_1384 0.65 +0.3
73,572 - Ac3H11_1384 0.65 +0.5
73,572 - Ac3H11_1384 0.65 -3.2
73,572 - Ac3H11_1384 0.65 +1.9
73,572 - Ac3H11_1384 0.65 +0.5
74,105 + +2.1
74,105 + -2.3
74,105 + -0.5
74,105 + -0.9
74,105 + -1.0
74,106 - -2.1
74,106 - +0.6
74,106 - -0.2
74,106 - +1.4
74,106 - +0.3
74,282 - +1.7
74,282 - +2.5
74,295 + +0.1
74,350 + -1.5
74,350 + -3.7
74,350 + +0.4
74,350 + -1.6
74,350 + -1.0
74,350 + +0.3
74,351 - -0.8
74,351 - -0.7
74,351 - -3.4
74,351 - -0.3
74,351 - -2.7
74,351 - -0.3
74,411 - Ac3H11_1385 0.10 -2.0
74,416 + Ac3H11_1385 0.11 -2.4
74,416 + Ac3H11_1385 0.11 +3.1
74,416 + Ac3H11_1385 0.11 +0.5
74,416 + Ac3H11_1385 0.11 +0.9
74,416 + Ac3H11_1385 0.11 -0.2
74,416 + Ac3H11_1385 0.11 +2.2
74,416 + Ac3H11_1385 0.11 +1.4
74,416 + Ac3H11_1385 0.11 -2.2
74,416 + Ac3H11_1385 0.11 -1.1
74,416 + Ac3H11_1385 0.11 -3.0
74,416 + Ac3H11_1385 0.11 -1.5
74,417 - Ac3H11_1385 0.11 +1.6
74,417 - Ac3H11_1385 0.11 +1.1
74,417 - Ac3H11_1385 0.11 -0.3
74,417 - Ac3H11_1385 0.11 +0.4
74,417 - Ac3H11_1385 0.11 -1.5
74,417 - Ac3H11_1385 0.11 -1.2
74,417 - Ac3H11_1385 0.11 -2.3
74,417 - Ac3H11_1385 0.11 -0.6
74,443 + Ac3H11_1385 0.13 +2.0
74,443 + Ac3H11_1385 0.13 +1.0
74,443 + Ac3H11_1385 0.13 +2.5
74,444 - Ac3H11_1385 0.13 -2.8
74,485 + Ac3H11_1385 0.17 +0.7
74,485 + Ac3H11_1385 0.17 -1.5
74,486 - Ac3H11_1385 0.17 +1.0
74,486 - Ac3H11_1385 0.17 +1.3
74,617 + Ac3H11_1385 0.28 -1.0
74,635 + Ac3H11_1385 0.30 +0.7
74,635 + Ac3H11_1385 0.30 -0.8
74,635 + Ac3H11_1385 0.30 +1.5
74,636 - Ac3H11_1385 0.30 +1.0
74,636 - Ac3H11_1385 0.30 -0.2
74,636 - Ac3H11_1385 0.30 +0.6
74,954 + Ac3H11_1385 0.57 +1.4
74,954 + Ac3H11_1385 0.57 -1.3
74,955 - Ac3H11_1385 0.57 -2.1
74,955 - Ac3H11_1385 0.57 +0.7
74,955 - Ac3H11_1385 0.57 +0.8
74,955 - Ac3H11_1385 0.57 -0.9
75,499 + +1.5
75,500 - +0.0
75,509 + -0.9
75,615 + +1.2
75,619 + -1.0
75,663 + +0.4
75,663 + -3.7
75,663 + +0.2
75,664 - -2.1
75,664 - +2.0
75,664 - +2.1
75,664 - +0.4
75,664 - +1.2
75,664 - +1.6
75,664 - +2.1
75,664 - +0.8
75,831 + Ac3H11_1386 0.19 +0.9
75,831 + Ac3H11_1386 0.19 -3.2
75,831 + Ac3H11_1386 0.19 +0.5
75,832 - Ac3H11_1386 0.19 -0.1
75,832 - Ac3H11_1386 0.19 +0.4
75,860 + Ac3H11_1386 0.24 -0.7
75,860 + Ac3H11_1386 0.24 -2.3
75,860 + Ac3H11_1386 0.24 +0.1
75,861 - Ac3H11_1386 0.24 -4.2
76,171 + Ac3H11_1386 0.74 +0.2
76,171 + Ac3H11_1386 0.74 +1.3
76,171 + Ac3H11_1386 0.74 +2.3
76,171 + Ac3H11_1386 0.74 -1.9
76,172 - Ac3H11_1386 0.74 -0.6
76,172 - Ac3H11_1386 0.74 +0.5
76,172 - Ac3H11_1386 0.74 +1.6
76,172 - Ac3H11_1386 0.74 -0.9
76,172 - Ac3H11_1386 0.74 -0.1
76,172 - Ac3H11_1386 0.74 -0.9
76,172 - Ac3H11_1386 0.74 +0.1
76,172 - Ac3H11_1386 0.74 -1.7
76,172 - Ac3H11_1386 0.74 +0.9
76,172 - Ac3H11_1386 0.74 -2.6
76,172 - Ac3H11_1386 0.74 -3.1
76,172 - Ac3H11_1386 0.74 +2.2
76,172 - Ac3H11_1386 0.74 -0.8
76,290 + -1.3
76,290 + -1.8
76,290 + +0.5
76,290 + -2.3
76,291 - +1.7
76,291 - -1.0
76,291 - +1.0
76,339 + +0.9
76,339 + -3.2
76,339 + -1.4
76,339 + +1.4
76,340 - +0.5
76,340 - -3.3
76,340 - +0.9
76,392 + Ac3H11_1387 0.14 -3.1
76,392 + Ac3H11_1387 0.14 +1.6
76,393 - Ac3H11_1387 0.15 +1.1
76,409 + Ac3H11_1387 0.19 +1.4
76,409 + Ac3H11_1387 0.19 -1.1
76,410 - Ac3H11_1387 0.19 +1.0
76,410 - Ac3H11_1387 0.19 +0.6

Or see this region's nucleotide sequence